Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb091570 Zea mays HOM05D005231 ORTHO05D006387 8.2e-285 983.0 490 100.0
Zm00001eb201030 Zea mays HOM05D005231 ORTHO05D006387 6.6e-258 893.6 464 95.7
Os02g0793100 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 1.7e-253 879.0 464 93.5
Os11g0175900 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 2.8e-253 878.2 462 93.7
Nn4g22395 Nelumbo nucifera HOM05D005231 ORTHO05D006387 1.9e-225 785.8 465 82.6
MD06G1184100 Malus domestica HOM05D005231 ORTHO05D006387 1.3e-221 773.1 465 81.3
Prupe.5G183000 Prunus persica HOM05D005231 ORTHO05D006387 1.3e-221 773.1 465 81.3
Ciclev10014086m.g Citrus clementina HOM05D005231 ORTHO05D006387 2.9e-221 771.9 465 81.7
Lj7A607T31 Lonicera japonica HOM05D005231 ORTHO05D006387 2.9e-221 771.9 465 80.6
QL02p072461 Quercus lobata HOM05D005231 ORTHO05D006387 2.9e-221 771.9 465 81.1
GSVIVG01001825001 Vitis vinifera HOM05D005231 ORTHO05D006387 2.9e-221 771.9 465 80.9
MD14G1190000 Malus domestica HOM05D005231 ORTHO05D006387 3.8e-221 771.5 464 81.5
Nitab4.5_0006008g0040 Nicotiana tabacum HOM05D005231 ORTHO05D006387 4.9e-221 771.2 465 80.9
CiPaw.03G052100 Carya illinoinensis HOM05D005231 ORTHO05D006387 6.4e-221 770.8 465 80.6
Hma1.2p1_0571F.1_g180760 Hydrangea macrophylla HOM05D005231 ORTHO05D006387 6.4e-221 770.8 465 80.9
Hund15390 Selenicereus undatus HOM05D005231 ORTHO05D006387 6.4e-221 770.8 471 79.8
Manes.17G106200 Manihot esculenta HOM05D005231 ORTHO05D006387 1.4e-220 769.6 465 81.3
Aqoxy5G03496 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 4.2e-220 768.1 465 80.2
Dinv25680 Davidia involucrata HOM05D005231 ORTHO05D006387 4.2e-220 768.1 465 80.9
Nitab4.5_0000731g0120 Nicotiana tabacum HOM05D005231 ORTHO05D006387 7.1e-220 767.3 465 80.4
CiPaw.04G034400 Carya illinoinensis HOM05D005231 ORTHO05D006387 9.2e-220 766.9 465 80.2
Cc07_g00560 Coffea canephora HOM05D005231 ORTHO05D006387 9.2e-220 766.9 465 79.6
CAN.G745.7 Capsicum annuum HOM05D005231 ORTHO05D006387 1.2e-219 766.5 465 80.4
PGR142G3743 Punica granatum HOM05D005231 ORTHO05D006387 1.2e-219 766.5 465 80.6
Ah.01g004700 Amaranthus hybridus HOM05D005231 ORTHO05D006387 1.6e-219 766.1 470 80.0
TAR371G0773 Trochodendron aralioides HOM05D005231 ORTHO05D006387 3.5e-219 765.0 465 80.9
Cfa007256 Carpinus fangiana HOM05D005231 ORTHO05D006387 6.0e-219 764.2 470 79.4
AUR62014230 Chenopodium quinoa HOM05D005231 ORTHO05D006387 6.0e-219 764.2 470 79.8
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 1.7e-218 762.7 470 78.5
ClCG05G007180 Citrullus lanatus HOM05D005231 ORTHO05D006387 2.3e-218 762.3 465 80.4
Solyc11g068640.2 Solanum lycopersicum HOM05D005231 ORTHO05D006387 2.3e-218 762.3 465 80.0
Sopen11g027360 Solanum pennellii HOM05D005231 ORTHO05D006387 2.3e-218 762.3 465 80.0
Thecc.04G029800 Theobroma cacao HOM05D005231 ORTHO05D006387 2.3e-218 762.3 465 80.9
Actinidia30894 Actinidia chinensis HOM05D005231 ORTHO05D006387 5.1e-218 761.1 465 79.6
Ca_26723_v3 Cicer arietinum L. HOM05D005231 ORTHO05D006387 8.7e-218 760.4 465 80.2
Migut.K01445 Erythranthe guttata HOM05D005231 ORTHO05D006387 8.7e-218 760.4 465 79.4
Sed0020589 Sechium edule HOM05D005231 ORTHO05D006387 8.7e-218 760.4 465 80.6
CANSAT64G0673 Cannabis sativa HOM05D005231 ORTHO05D006387 1.1e-217 760.0 465 79.6
TPR.G38280 Trifolium pratense HOM05D005231 ORTHO05D006387 1.5e-217 759.6 465 80.0
Glyma.19G086600 Glycine max HOM05D005231 ORTHO05D006387 1.9e-217 759.2 465 79.8
SalBow1G7136 Salvia bowleyana HOM05D005231 ORTHO05D006387 1.9e-217 759.2 465 78.9
Haze_14831 Corylus avellana HOM05D005231 ORTHO05D006387 2.5e-217 758.8 470 78.9
Lsat_1_v5_gn_2_93920 Lactuca sativa HOM05D005231 ORTHO05D006387 2.5e-217 758.8 466 79.8
Sc03g0006820 Simmondsia chinensis HOM05D005231 ORTHO05D006387 2.5e-217 758.8 470 78.9
Cpa.g.sc130.10 Carica papaya HOM05D005231 ORTHO05D006387 3.3e-217 758.4 464 80.2
Potri.001G334300 Populus trichocarpa HOM05D005231 ORTHO05D006387 3.3e-217 758.4 465 80.0
Psat3g170000 Pisum sativum HOM05D005231 ORTHO05D006387 4.3e-217 758.1 465 79.8
RcHm_v2.0_Chr7g0180111 Rosa chinensis HOM05D005231 ORTHO05D006387 4.3e-217 758.1 465 79.8
THA.LOC104822412 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 4.3e-217 758.1 465 78.5
Aa31LG5G10910 Aethionema arabicum HOM05D005231 ORTHO05D006387 5.6e-217 757.7 465 78.9
ATR0693G284 Amborella trichopoda HOM05D005231 ORTHO05D006387 9.6e-217 756.9 465 78.7
Carub.0003s0028 Capsella rubella HOM05D005231 ORTHO05D006387 9.6e-217 756.9 465 78.9
FAN08G2159 Fragaria x ananassa HOM05D005231 ORTHO05D006387 9.6e-217 756.9 470 79.4
FAN18G1846 Fragaria x ananassa HOM05D005231 ORTHO05D006387 1.3e-216 756.5 470 79.4
FAN04G1242 Fragaria x ananassa HOM05D005231 ORTHO05D006387 1.6e-216 756.1 470 79.4
PSO063G5961 Papaver somniferum HOM05D005231 ORTHO05D006387 1.6e-216 756.1 465 78.5
Sp3g00280 Schrenkiella parvula HOM05D005231 ORTHO05D006387 1.6e-216 756.1 465 78.7
Atru.chr6.2511 Acer truncatum HOM05D005231 ORTHO05D006387 2.1e-216 755.7 465 79.4
AL3G10350 Arabidopsis lyrata HOM05D005231 ORTHO05D006387 2.1e-216 755.7 465 78.5
COL.COLO4_08767 Corchorus olitorius HOM05D005231 ORTHO05D006387 2.1e-216 755.7 465 80.0
AT3G01780 Arabidopsis thaliana HOM05D005231 ORTHO05D006387 2.8e-216 755.4 465 78.5
Eucgr.I01665 Eucalyptus grandis HOM05D005231 ORTHO05D006387 2.8e-216 755.4 467 80.1
Medtr7g031450 Medicago truncatula HOM05D005231 ORTHO05D006387 2.8e-216 755.4 465 79.8
Glyma.16G060500 Glycine max HOM05D005231 ORTHO05D006387 3.6e-216 755.0 465 78.9
TWI12G0663 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 3.6e-216 755.0 470 78.9
Lalb_Chr14g0363091 Lupinus albus HOM05D005231 ORTHO05D006387 4.8e-216 754.6 470 78.9
Duzib264G1000 Durio zibethinus HOM05D005231 ORTHO05D006387 6.2e-216 754.2 465 79.6
FvH4_5g15940 Fragaria vesca HOM05D005231 ORTHO05D006387 6.2e-216 754.2 470 79.1
PSO782G5010 Papaver somniferum HOM05D005231 ORTHO05D006387 8.1e-216 753.8 465 78.3
Peaxi162Scf00224g00118 Petunia axillaris HOM05D005231 ORTHO05D006387 8.1e-216 753.8 511 74.2
Phvul.001G096100 Phaseolus vulgaris HOM05D005231 ORTHO05D006387 8.1e-216 753.8 465 79.1
CARHR075150 Cardamine hirsuta HOM05D005231 ORTHO05D006387 1.4e-215 753.1 465 78.5
Sabra16G0215400 Salix brachista HOM05D005231 ORTHO05D006387 1.4e-215 753.1 465 79.4
Nn2g10551 Nelumbo nucifera HOM05D005231 ORTHO05D006387 1.8e-215 752.7 465 78.7
Duzib147G1087 Durio zibethinus HOM05D005231 ORTHO05D006387 2.4e-215 752.3 465 79.8
Thhalv10019930m.g Eutrema salsugineum HOM05D005231 ORTHO05D006387 3.1e-215 751.9 465 78.3
Gohir.D09G035000 Gossypium hirsutum HOM05D005231 ORTHO05D006387 3.1e-215 751.9 465 79.8
Gorai.006G039900 Gossypium raimondii HOM05D005231 ORTHO05D006387 4.0e-215 751.5 465 79.8
arahy.Tifrunner.gnm1.ann1.L2Q6WP Arachis hypogaea HOM05D005231 ORTHO05D006387 5.3e-215 751.1 465 79.1
HanXRQChr14g0450911 Helianthus annuus HOM05D005231 ORTHO05D006387 9.0e-215 750.4 465 78.3
Lj1g0000655 Lotus japonicus HOM05D005231 ORTHO05D006387 9.0e-215 750.4 465 79.4
A02p30380 Brassica napus HOM05D005231 ORTHO05D006387 1.2e-214 750.0 465 78.3
BraA02t08053Z Brassica rapa HOM05D005231 ORTHO05D006387 1.2e-214 750.0 465 78.3
DCAR_021762 Daucus carota HOM05D005231 ORTHO05D006387 1.2e-214 750.0 465 78.5
BcaC03g16893 Brassica carinata HOM05D005231 ORTHO05D006387 1.5e-214 749.6 465 78.1
C02p47900 Brassica napus HOM05D005231 ORTHO05D006387 1.5e-214 749.6 465 78.1
BolC2t10823H Brassica oleracea HOM05D005231 ORTHO05D006387 1.5e-214 749.6 465 78.1
Gohir.A09G034100 Gossypium hirsutum HOM05D005231 ORTHO05D006387 1.5e-214 749.6 465 79.6
MSTRG.3095 Avicennia marina HOM05D005231 ORTHO05D006387 4.4e-214 748.0 465 77.0
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 4.4e-214 748.0 471 78.6
arahy.Tifrunner.gnm1.ann1.M0JNNK Arachis hypogaea HOM05D005231 ORTHO05D006387 9.9e-214 746.9 476 77.5
ECA238G4317 Erigeron canadensis HOM05D005231 ORTHO05D006387 9.9e-214 746.9 466 78.8
TWI36G1540 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 9.9e-214 746.9 470 78.1
VMungo1215G0650 Vigna mungo HOM05D005231 ORTHO05D006387 9.9e-214 746.9 465 78.7
Manes.15G157900 Manihot esculenta HOM05D005231 ORTHO05D006387 1.7e-213 746.1 463 79.0
Rhsim08G0045200 Rhododendron simsii HOM05D005231 ORTHO05D006387 2.3e-210 735.7 509 72.1
unitig_21.g20479 Utricularia gibba HOM05D005231 ORTHO05D006387 6.6e-210 734.2 465 76.3
SEGI_09869 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 6.2e-208 727.6 466 76.0
HPP92_011387 Vanilla planifolia HOM05D005231 ORTHO05D006387 4.0e-207 724.9 422 82.9
EL10Ac6g14067 Beta vulgaris HOM05D005231 ORTHO05D006387 1.2e-206 723.4 470 76.8
MBI11_g15863_MAGBIO Magnolia biondii HOM05D005231 ORTHO05D006387 7.6e-206 720.7 423 82.5
SHI03892 Sapria himalayana HOM05D005231 ORTHO05D006387 6.4e-205 717.6 465 75.9
CSS0002510 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 1.3e-202 709.9 466 76.8
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 1.1e-201 706.8 480 72.7
vmacro18325 Vaccinium macrocarpon HOM05D005231 ORTHO05D006387 3.8e-197 691.8 468 73.9
FAN13G1708 Fragaria x ananassa HOM05D005231 ORTHO05D006387 4.9e-197 691.4 465 75.3
Mapoly0078s0040 Marchantia polymorpha HOM05D005231 ORTHO05D006387 6.1e-187 657.9 465 67.5
SMO143G0109 Selaginella moellendorffii HOM05D005231 ORTHO05D006387 5.7e-185 651.4 478 67.8
Pp3c2_2820 Physcomitrium patens HOM05D005231 ORTHO05D006387 7.2e-180 634.4 464 67.0
AagrBONN_evm.TU.Sc2ySwM_344.3213 Anthoceros agrestis HOM05D005231 ORTHO05D006387 9.4e-180 634.0 466 64.8
Pp3c14_16610 Physcomitrium patens HOM05D005231 ORTHO05D006387 6.1e-179 631.3 464 66.4
Pp3c10_18980 Physcomitrium patens HOM05D005231 ORTHO05D006387 1.0e-178 630.6 495 63.4
BcaB01g00417 Brassica carinata HOM05D005231 ORTHO05D006387 4.2e-164 582.0 478 64.6
Oeu050426.1 Olea europaea HOM05D005231 ORTHO05D006387 2.1e-155 553.1 320 84.1
AUR62014240 Chenopodium quinoa HOM05D005231 ORTHO05D006387 2.0e-150 536.6 471 62.0
CDE07G1517 Ceratophyllum demersum HOM05D005231 ORTHO05D006387 8.5e-149 531.2 335 76.1
CBR_g21747 Chara braunii HOM05D005231 ORTHO05D006387 7.2e-148 528.1 469 55.2
CsaV3_3G015940 Cucumis sativus L. HOM05D005231 ORTHO05D006387 6.0e-110 402.1 266 73.7
AUR62038505 Chenopodium quinoa HOM05D005231 ORTHO05D006387 1.5e-108 397.5 271 71.2
AUR62038506 Chenopodium quinoa HOM05D005231 ORTHO05D006387 7.8e-102 375.2 221 84.6
CSS0033455 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 1.7e-96 357.5 201 86.1
CsaV3_3G015930 Cucumis sativus L. HOM05D005231 ORTHO05D006387 6.0e-86 322.4 170 91.2
Dinv33368 Davidia involucrata HOM05D005231 ORTHO05D006387 5.8e-81 305.8 194 76.3
Oeu050427.1 Olea europaea HOM05D005231 ORTHO05D006387 9.4e-55 218.8 155 68.4
Dinv33367 Davidia involucrata HOM05D005231 ORTHO05D006387 1.0e-53 215.3 148 71.6
TAR365G0935 Trochodendron aralioides HOM05D000199 ORTHO05D015700 2.7e-09 67.8 51 64.7
TAR626G1446 Trochodendron aralioides HOM05D000199 ORTHO05D015700 3.5e-09 67.4 51 62.7
TAR627G1114 Trochodendron aralioides HOM05D005231 ORTHO05D006387 5.0e-08 63.5 51 60.8


User provided reference genes

Program Settings