Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 1.5e-278 962.2 499 100.0
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 7.3e-63 245.7 298 47.0
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 4.6e-57 226.5 236 55.1
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 3.4e-52 210.3 321 43.6
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 1.2e-49 201.8 320 40.0
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 1.6e-49 201.4 319 40.4
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 2.7e-49 200.7 332 40.4
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 3.5e-49 200.3 335 39.4
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 7.8e-49 199.1 326 39.9
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.0e-48 198.7 335 41.5
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 1.3e-48 198.4 326 39.9
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 1.7e-48 198.0 330 40.3
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 2.3e-48 197.6 320 39.4
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 3.0e-48 197.2 317 41.0
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 3.9e-48 196.8 317 40.1
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 3.9e-48 196.8 333 41.1
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 3.9e-48 196.8 333 41.1
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 3.9e-48 196.8 331 38.7
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 5.1e-48 196.4 343 39.7
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 5.1e-48 196.4 315 41.0
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 6.6e-48 196.1 311 40.8
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 6.6e-48 196.1 333 39.0
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 6.6e-48 196.1 334 39.8
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 8.7e-48 195.7 314 39.8
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 8.7e-48 195.7 311 39.9
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 8.7e-48 195.7 320 39.4
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 8.7e-48 195.7 329 41.9
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 1.5e-47 194.9 317 39.7
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.5e-47 194.9 317 39.7
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 2.5e-47 194.1 319 38.9
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 3.3e-47 193.7 319 38.6
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 3.3e-47 193.7 326 39.0
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 3.3e-47 193.7 326 39.0
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 4.3e-47 193.4 330 39.4
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 4.3e-47 193.4 307 39.1
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 5.6e-47 193.0 327 39.1
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 7.3e-47 192.6 330 38.5
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 7.3e-47 192.6 320 40.3
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 7.3e-47 192.6 334 38.9
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 7.3e-47 192.6 333 39.9
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 7.3e-47 192.6 331 40.2
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 7.3e-47 192.6 329 41.3
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 7.3e-47 192.6 329 38.3
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 9.6e-47 192.2 326 39.0
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 9.6e-47 192.2 326 39.0
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 9.6e-47 192.2 310 40.0
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 9.6e-47 192.2 322 40.1
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 1.6e-46 191.4 328 39.9
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 1.6e-46 191.4 315 40.0
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 1.6e-46 191.4 319 39.8
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 1.6e-46 191.4 346 38.7
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 2.1e-46 191.0 326 38.7
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 2.1e-46 191.0 314 41.4
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 2.1e-46 191.0 334 39.5
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 2.8e-46 190.7 338 39.1
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 2.8e-46 190.7 330 39.4
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 3.6e-46 190.3 331 38.4
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 4.8e-46 189.9 331 39.9
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.8e-46 189.9 309 41.1
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 6.2e-46 189.5 329 40.4
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 6.2e-46 189.5 334 38.3
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 6.2e-46 189.5 338 39.1
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 8.1e-46 189.1 317 38.5
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 1.1e-45 188.7 329 38.6
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 1.1e-45 188.7 333 37.5
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 1.4e-45 188.3 309 40.1
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 2.4e-45 187.6 340 38.5
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 2.4e-45 187.6 308 38.3
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 3.1e-45 187.2 340 38.5
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.0e-45 186.8 309 39.8
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 5.3e-45 186.4 343 38.2
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 5.3e-45 186.4 343 38.2
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 9.0e-45 185.7 337 37.7
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 1.2e-44 185.3 323 39.3
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 1.2e-44 185.3 329 38.3
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 1.5e-44 184.9 343 37.9
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 3.4e-44 183.7 330 39.4
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 4.4e-44 183.3 310 39.4
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.4e-44 183.3 310 39.4
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 7.6e-44 182.6 336 37.8
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 9.9e-44 182.2 331 36.6
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 1.7e-43 181.4 367 35.7
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 1.7e-43 181.4 283 41.3
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 3.8e-43 180.3 322 37.0
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 1.1e-42 178.7 327 36.7
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 1.1e-42 178.7 321 37.4
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 1.1e-42 178.7 334 37.7
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 1.4e-42 178.3 317 38.8
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 3.2e-42 177.2 335 37.3
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 1.2e-41 175.3 254 43.7
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.6e-41 174.9 261 42.5
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 2.1e-41 174.5 368 35.3
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 4.6e-41 173.3 370 34.1
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 6.0e-41 172.9 320 36.2
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 1.7e-40 171.4 288 39.2
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 2.3e-40 171.0 277 39.0
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 3.0e-40 170.6 316 38.6
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 3.0e-40 170.6 316 37.3
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 8.7e-40 169.1 323 38.1
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.1e-39 168.7 265 42.3
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 1.9e-39 167.9 263 39.5
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 3.3e-39 167.2 312 37.5
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 1.6e-38 164.9 194 48.5
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 1.8e-37 161.4 344 35.8
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 3.1e-37 160.6 266 38.7
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 1.5e-36 158.3 313 36.4
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 4.5e-36 156.8 291 38.5
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 4.5e-36 156.8 336 35.1
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 3.8e-35 153.7 298 33.9
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 6.4e-35 152.9 343 34.1
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 1.4e-34 151.8 319 34.5
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 1.4e-34 151.8 311 35.4
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 3.2e-34 150.6 291 35.4
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 4.2e-34 150.2 232 40.1
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 2.7e-33 147.5 337 33.8
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 3.5e-33 147.1 233 40.3
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 7.9e-33 146.0 249 40.2
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.1e-31 142.1 302 33.8
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 2.5e-31 141.0 328 33.5
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 4.3e-31 140.2 289 34.6
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 4.3e-31 140.2 207 40.1
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 9.6e-31 139.0 294 37.1
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 3.7e-30 137.1 361 31.3
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 4.8e-30 136.7 454 29.3
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 6.2e-30 136.3 313 33.5
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 1.0e-27 129.0 392 30.6
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 2.2e-27 127.9 252 35.7
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 2.9e-27 127.5 254 31.9
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 4.9e-27 126.7 304 31.9
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 1.1e-26 125.6 225 39.6
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 2.5e-26 124.4 221 38.5
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 5.5e-26 123.2 196 39.3
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 6.0e-25 119.8 214 37.4
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 2.3e-24 117.9 266 30.5
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 1.1e-23 115.5 206 39.3
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 6.3e-22 109.8 199 35.2
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 3.1e-21 107.5 136 46.3
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 7.2e-18 96.3 73 63.0
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 4.3e-15 87.0 71 59.2
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 4.3e-15 87.0 71 59.2
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 4.3e-15 87.0 71 59.2
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 7.4e-15 86.3 71 59.2
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 9.7e-15 85.9 70 60.0
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 1.4e-13 82.0 174 33.3
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 1.8e-13 81.6 187 32.6
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 2.6e-12 77.8 294 24.8
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 7.7e-12 76.3 91 41.8
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 3.2e-10 70.9 64 54.7
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 7.2e-10 69.7 221 26.7
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.2e-09 68.9 252 25.8
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 1.6e-09 68.6 77 42.9
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 5.1e-08 63.5 81 37.0
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 5.1e-08 63.5 408 24.3
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 2.8e-06 57.8 69 36.2
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 4.8e-06 57.0 74 43.2
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 6.3e-06 56.6 69 42.0


User provided reference genes

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