Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb090340 Zea mays HOM05D005845 ORTHO05D007067 9.5e-92 340.1 166 100.0
Zm00001eb168820 Zea mays HOM05D005845 ORTHO05D007067 3.1e-66 255.4 129 95.3
Zm00001eb372120 Zea mays HOM05D005845 ORTHO05D007067 1.2e-33 147.1 156 55.8
Zm00001eb299980 Zea mays HOM05D005845 ORTHO05D007067 3.3e-28 129.0 64 100.0
Os05g0292800 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 1.4e-26 123.6 64 95.3
Rhsim04G0158900 Rhododendron simsii HOM05D005845 ORTHO05D007067 3.4e-25 119.0 75 73.3
Eucgr.G01508 Eucalyptus grandis HOM05D005845 ORTHO05D007067 5.8e-25 118.2 69 82.6
CiPaw.10G147000 Carya illinoinensis HOM05D005845 ORTHO05D007067 2.9e-24 115.9 64 82.8
Nn2g13425 Nelumbo nucifera HOM05D005845 ORTHO05D007067 3.8e-24 115.5 64 84.4
TWI77G0787 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 3.8e-24 115.5 64 84.4
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 5.0e-24 115.2 64 84.4
Eucgr.K03081 Eucalyptus grandis HOM05D005845 ORTHO05D007067 5.0e-24 115.2 64 82.8
Eucgr.K03092 Eucalyptus grandis HOM05D005845 ORTHO05D007067 5.0e-24 115.2 64 82.8
ClCG10G021330 Citrullus lanatus HOM05D005845 ORTHO05D007067 6.5e-24 114.8 64 84.4
TWI74G0153 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 8.4e-24 114.4 64 82.8
Lj1g0012131 Lotus japonicus HOM05D005845 ORTHO05D007067 1.1e-23 114.0 84 67.9
COL.COLO4_14759 Corchorus olitorius HOM05D005845 ORTHO05D007067 1.4e-23 113.6 64 81.2
ECA233G0482 Erigeron canadensis HOM05D005845 ORTHO05D007067 1.4e-23 113.6 64 79.7
Lalb_Chr03g0042411 Lupinus albus HOM05D005845 ORTHO05D007067 1.4e-23 113.6 64 81.2
MD12G1145500 Malus domestica HOM05D005845 ORTHO05D007067 1.4e-23 113.6 87 65.5
TAR633G1228 Trochodendron aralioides HOM05D005845 ORTHO05D007067 1.4e-23 113.6 64 81.2
Nitab4.5_0000705g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 1.9e-23 113.2 64 82.8
Nitab4.5_0003394g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 1.9e-23 113.2 64 82.8
Peaxi162Scf00527g00733 Petunia axillaris HOM05D005845 ORTHO05D007067 1.9e-23 113.2 64 84.4
Prupe.6G259200 Prunus persica HOM05D005845 ORTHO05D007067 1.9e-23 113.2 64 81.2
Sc01g0004490 Simmondsia chinensis HOM05D005845 ORTHO05D007067 1.9e-23 113.2 85 69.4
vmacro20178 Vaccinium macrocarpon HOM05D005845 ORTHO05D007067 1.9e-23 113.2 64 81.2
A03p00540 Brassica napus HOM05D005845 ORTHO05D007067 2.5e-23 112.8 89 65.2
BraA03t09444Z Brassica rapa HOM05D005845 ORTHO05D007067 2.5e-23 112.8 89 65.2
Os12g0480100 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 2.5e-23 112.8 64 84.4
PGR004G0892 Punica granatum HOM05D005845 ORTHO05D007067 2.5e-23 112.8 93 61.3
RcHm_v2.0_Chr3g0466071 Rosa chinensis HOM05D005845 ORTHO05D007067 2.5e-23 112.8 64 81.2
Ciclev10013078m.g Citrus clementina HOM05D005845 ORTHO05D007067 3.2e-23 112.5 64 82.8
Duzib106G0947 Durio zibethinus HOM05D005845 ORTHO05D007067 3.2e-23 112.5 64 82.8
HanXRQChr02g0050481 Helianthus annuus HOM05D005845 ORTHO05D007067 3.2e-23 112.5 64 81.2
Manes.09G092274 Manihot esculenta HOM05D005845 ORTHO05D007067 3.2e-23 112.5 64 81.2
CSS0047206 Camellia sinensis var. sinensis HOM05D005845 ORTHO05D007067 4.2e-23 112.1 64 79.7
CsaV3_3G034730 Cucumis sativus L. HOM05D005845 ORTHO05D007067 4.2e-23 112.1 64 81.2
Psat3g137040 Pisum sativum HOM05D005845 ORTHO05D007067 4.2e-23 112.1 64 79.7
SalBow1G4544 Salvia bowleyana HOM05D005845 ORTHO05D007067 4.2e-23 112.1 64 82.8
SalBow7G2664 Salvia bowleyana HOM05D005845 ORTHO05D007067 4.2e-23 112.1 64 82.8
Sed0011119 Sechium edule HOM05D005845 ORTHO05D007067 4.2e-23 112.1 64 81.2
SEGI_39626 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 4.2e-23 112.1 64 82.8
GSVIVG01034129001 Vitis vinifera HOM05D005845 ORTHO05D007067 4.2e-23 112.1 64 81.2
ATR0559G337 Amborella trichopoda HOM05D005845 ORTHO05D007067 5.5e-23 111.7 68 79.4
BcaB01g06068 Brassica carinata HOM05D005845 ORTHO05D007067 5.5e-23 111.7 89 64.0
C03p00800 Brassica napus HOM05D005845 ORTHO05D007067 5.5e-23 111.7 89 64.0
BolC3t12643H Brassica oleracea HOM05D005845 ORTHO05D007067 5.5e-23 111.7 89 64.0
Thecc.05G035600 Theobroma cacao HOM05D005845 ORTHO05D007067 5.5e-23 111.7 64 79.7
Carub.0006s0096 Capsella rubella HOM05D005845 ORTHO05D007067 7.1e-23 111.3 64 82.8
Gohir.A04G065200 Gossypium hirsutum HOM05D005845 ORTHO05D007067 7.1e-23 111.3 66 77.3
Lsat_1_v5_gn_6_22520 Lactuca sativa HOM05D005845 ORTHO05D007067 7.1e-23 111.3 64 79.7
Sp6g40320 Schrenkiella parvula HOM05D005845 ORTHO05D007067 7.1e-23 111.3 61 86.9
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 9.3e-23 110.9 64 79.7
Hma1.2p1_0936F.1_g238990 Hydrangea macrophylla HOM05D005845 ORTHO05D007067 9.3e-23 110.9 64 79.7
Rhsim05G0194900 Rhododendron simsii HOM05D005845 ORTHO05D007067 9.3e-23 110.9 64 79.7
Solyc09g011010.3 Solanum lycopersicum HOM05D005845 ORTHO05D007067 9.3e-23 110.9 64 81.2
Sopen09g005730 Solanum pennellii HOM05D005845 ORTHO05D007067 9.3e-23 110.9 64 81.2
PGSC0003DMG400008901 Solanum tuberosum HOM05D005845 ORTHO05D007067 9.3e-23 110.9 64 81.2
TAR633G1058 Trochodendron aralioides HOM05D005845 ORTHO05D007067 9.3e-23 110.9 64 79.7
Aqoxy1G00879 Aquilegia oxysepala HOM05D005845 ORTHO05D007067 1.6e-22 110.2 64 79.7
CANSAT35G1952 Cannabis sativa HOM05D005845 ORTHO05D007067 1.6e-22 110.2 93 62.4
DCAR_028759 Daucus carota HOM05D005845 ORTHO05D007067 1.6e-22 110.2 64 78.1
Gohir.A07G012100 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.6e-22 110.2 64 78.1
Gohir.D07G011900 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.6e-22 110.2 64 78.1
Gorai.009G405900 Gossypium raimondii HOM05D005845 ORTHO05D007067 1.6e-22 110.2 64 78.1
MD04G1132800 Malus domestica HOM05D005845 ORTHO05D007067 1.6e-22 110.2 64 79.7
Potri.006G088200 Populus trichocarpa HOM05D005845 ORTHO05D007067 1.6e-22 110.2 64 76.6
AL6G11350 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 2.1e-22 109.8 61 85.2
BcaB01g06213 Brassica carinata HOM05D005845 ORTHO05D007067 2.1e-22 109.8 89 61.8
AUR62018118 Chenopodium quinoa HOM05D005845 ORTHO05D007067 2.1e-22 109.8 64 78.1
Gorai.001G012600 Gossypium raimondii HOM05D005845 ORTHO05D007067 2.1e-22 109.8 108 54.6
PSO339G6396 Papaver somniferum HOM05D005845 ORTHO05D007067 2.1e-22 109.8 64 79.7
AT5G02120 Arabidopsis thaliana HOM05D005845 ORTHO05D007067 2.7e-22 109.4 64 81.2
CAN.G597.2 Capsicum annuum HOM05D005845 ORTHO05D007067 2.7e-22 109.4 64 79.7
AUR62034449 Chenopodium quinoa HOM05D005845 ORTHO05D007067 2.7e-22 109.4 64 78.1
FvH4_6g13240 Fragaria vesca HOM05D005845 ORTHO05D007067 2.7e-22 109.4 61 80.3
FAN02G1947 Fragaria x ananassa HOM05D005845 ORTHO05D007067 2.7e-22 109.4 61 80.3
FAN14G4222 Fragaria x ananassa HOM05D005845 ORTHO05D007067 2.7e-22 109.4 61 80.3
MBI05_g35632_MAGBIO Magnolia biondii HOM05D005845 ORTHO05D007067 2.7e-22 109.4 64 78.1
arahy.Tifrunner.gnm1.ann1.1Q4DHH Arachis hypogaea HOM05D005845 ORTHO05D007067 3.5e-22 109.0 64 78.1
arahy.Tifrunner.gnm1.ann1.CX8U58 Arachis hypogaea HOM05D005845 ORTHO05D007067 3.5e-22 109.0 64 78.1
Migut.L01960 Erythranthe guttata HOM05D005845 ORTHO05D007067 3.5e-22 109.0 64 78.1
arahy.Tifrunner.gnm1.ann1.D19TT3 Arachis hypogaea HOM05D005845 ORTHO05D007067 4.6e-22 108.6 64 76.6
CARHR211240 Cardamine hirsuta HOM05D005845 ORTHO05D007067 4.6e-22 108.6 64 79.7
Cpa.g.sc3458.2 Carica papaya HOM05D005845 ORTHO05D007067 4.6e-22 108.6 64 76.6
PSO513G0176 Papaver somniferum HOM05D005845 ORTHO05D007067 4.6e-22 108.6 64 78.1
Gohir.D04G102600 Gossypium hirsutum HOM05D005845 ORTHO05D007067 6.1e-22 108.2 64 76.6
Lj3A964T57 Lonicera japonica HOM05D005845 ORTHO05D007067 6.1e-22 108.2 64 73.4
Medtr7g062970 Medicago truncatula HOM05D005845 ORTHO05D007067 6.1e-22 108.2 64 76.6
Sp3g07700 Schrenkiella parvula HOM05D005845 ORTHO05D007067 6.1e-22 108.2 94 60.6
Cc06_g02340 Coffea canephora HOM05D005845 ORTHO05D007067 7.9e-22 107.8 64 79.7
BcaC05g29521 Brassica carinata HOM05D005845 ORTHO05D007067 1.0e-21 107.5 64 81.2
BcaC05g29660 Brassica carinata HOM05D005845 ORTHO05D007067 1.0e-21 107.5 64 81.2
C05p58690 Brassica napus HOM05D005845 ORTHO05D007067 1.0e-21 107.5 64 81.2
BolC5t34518H Brassica oleracea HOM05D005845 ORTHO05D007067 1.0e-21 107.5 64 81.2
Phvul.008G118000 Phaseolus vulgaris HOM05D005845 ORTHO05D007067 1.0e-21 107.5 64 75.0
THA.LOC104816255 Tarenaya hassleriana HOM05D005845 ORTHO05D007067 1.0e-21 107.5 65 78.5
Thhalv10015070m.g Eutrema salsugineum HOM05D005845 ORTHO05D007067 1.3e-21 107.1 64 79.7
Glyma.07G135300 Glycine max HOM05D005845 ORTHO05D007067 1.3e-21 107.1 66 72.7
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 1.3e-21 107.1 64 76.6
A05p39650 Brassica napus HOM05D005845 ORTHO05D007067 1.8e-21 106.7 64 81.2
BraA05t22747Z Brassica rapa HOM05D005845 ORTHO05D007067 1.8e-21 106.7 64 81.2
Eucgr.K03094 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.8e-21 106.7 71 73.2
CDE06G2558 Ceratophyllum demersum HOM05D000816 ORTHO05D009154 3.9e-21 105.5 64 75.0
VMungo1383G2075 Vigna mungo HOM05D005845 ORTHO05D007067 3.9e-21 105.5 64 73.4
Ca_07339_v3 Cicer arietinum L. HOM05D005845 ORTHO05D007067 6.7e-21 104.8 64 75.0
QL07p030115 Quercus lobata HOM05D005845 ORTHO05D007067 6.7e-21 104.8 63 73.0
QL07p030897 Quercus lobata HOM05D005845 ORTHO05D007067 6.7e-21 104.8 63 73.0
Aa31LG3G1810 Aethionema arabicum HOM05D005845 ORTHO05D007067 8.7e-21 104.4 61 80.3
AL3G20470 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 1.1e-20 104.0 61 80.3
EL10Ac2g03022 Beta vulgaris HOM05D005845 ORTHO05D007067 1.5e-20 103.6 64 76.6
Lalb_Chr01g0022631 Lupinus albus HOM05D005845 ORTHO05D007067 1.9e-20 103.2 66 72.7
CARHR083690 Cardamine hirsuta HOM05D005845 ORTHO05D007067 2.5e-20 102.8 92 58.7
arahy.Tifrunner.gnm1.ann1.1BNP0N Arachis hypogaea HOM05D005845 ORTHO05D007067 3.3e-20 102.4 66 74.2
Carub.0003s0843 Capsella rubella HOM05D005845 ORTHO05D007067 2.2e-19 99.8 61 77.0
FAN05G4617 Fragaria x ananassa HOM05D005845 ORTHO05D007067 2.8e-19 99.4 61 75.4
Sabra06G0067200 Salix brachista HOM05D000102 ORTHO05D004225 4.8e-19 98.6 57 75.4
Oeu023072.1 Olea europaea HOM05D005845 ORTHO05D007067 8.2e-19 97.8 60 73.3
MELO3C009241.2 Cucumis melo HOM05D005845 ORTHO05D007067 2.4e-18 96.3 95 55.8
Eucgr.G00292 Eucalyptus grandis HOM05D005845 ORTHO05D007067 2.6e-17 92.8 66 68.2
AagrBONN_evm.TU.Sc2ySwM_344.1593 Anthoceros agrestis HOM05D005845 ORTHO05D007067 5.9e-17 91.7 64 67.2
Eucgr.K03089 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.7e-16 90.1 53 73.6
Mapoly0151s0005 Marchantia polymorpha HOM05D005845 ORTHO05D007067 1.7e-16 90.1 64 65.6
Pp3c18_21050 Physcomitrium patens HOM05D005845 ORTHO05D007067 1.7e-16 90.1 64 65.6
HPP92_019240 Vanilla planifolia HOM05D005845 ORTHO05D007067 2.2e-16 89.7 56 78.6
Pp3c22_8010 Physcomitrium patens HOM05D005845 ORTHO05D007067 1.4e-15 87.0 63 61.9
Glyma.18G185300 Glycine max HOM05D005845 ORTHO05D007067 1.8e-13 80.1 44 81.8
SEGI_14936 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 2.3e-13 79.7 43 86.0
CBR_g4596 Chara braunii HOM05D005845 ORTHO05D007067 1.5e-12 77.0 64 56.2
TPR.G34843 Trifolium pratense HOM05D005845 ORTHO05D007067 1.5e-12 77.0 48 70.8
Actinidia11275 Actinidia chinensis HOM05D005845 ORTHO05D007067 5.7e-12 75.1 42 78.6
Dinv35574 Davidia involucrata HOM05D005845 ORTHO05D007067 5.7e-12 75.1 42 81.0
TAR369G0629 Trochodendron aralioides HOM05D005845 ORTHO05D007067 2.8e-11 72.8 41 80.5
TPR.G22204 Trifolium pratense HOM05D000026 ORTHO05D007067 1.8e-10 70.1 51 64.7
Rhsim04G0160800 Rhododendron simsii HOM05D005845 ORTHO05D007067 4.1e-10 68.9 37 86.5
Eucgr.K03086 Eucalyptus grandis HOM05D005845 ORTHO05D007067 6.9e-10 68.2 39 79.5


User provided reference genes

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