Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb089730 Zea mays HOM05D000166 ORTHO05D013215 1.1e-70 270.4 197 100.0
Zm00001eb412300 Zea mays HOM05D000166 ORTHO05D013215 1.1e-70 270.4 197 100.0
Zm00001eb291070 Zea mays HOM05D000166 ORTHO05D000812 1.4e-25 120.6 201 67.7
Eucgr.A00886 Eucalyptus grandis HOM05D000166 ORTHO05D000812 5.0e-23 112.1 188 50.5
MD04G1183000 Malus domestica HOM05D000166 ORTHO05D000812 4.2e-22 109.0 80 67.5
FAN04G2835 Fragaria x ananassa HOM05D000166 ORTHO05D000812 9.4e-22 107.8 192 49.5
SEGI_01804 Sequoiadendron giganteum HOM05D000166 ORTHO05D000812 3.9e-20 102.4 78 64.1
Lsat_1_v5_gn_1_96600 Lactuca sativa HOM05D000166 ORTHO05D000812 5.1e-20 102.1 94 56.4
SEGI_19318 Sequoiadendron giganteum HOM05D000166 ORTHO05D000812 6.7e-20 101.7 78 64.1
SEGI_19935 Sequoiadendron giganteum HOM05D000166 ORTHO05D013215 1.5e-19 100.5 79 63.3
Hund15333 Selenicereus undatus HOM05D000166 ORTHO05D000812 8.2e-18 94.7 126 42.9
SHI30525 Sapria himalayana HOM05D000166 ORTHO05D000812 3.5e-16 89.4 132 40.9
arahy.Tifrunner.gnm1.ann1.K0E5I2 Arachis hypogaea HOM05D000500 ORTHO05D000367 4.5e-16 89.0 78 56.4
Ah.10g036700 Amaranthus hybridus HOM05D000166 ORTHO05D000812 1.3e-15 87.4 162 57.4
Lj9A243T48 Lonicera japonica HOM05D000166 ORTHO05D000812 1.7e-15 87.0 193 46.1
QL02p103892 Quercus lobata HOM05D000166 ORTHO05D013215 1.7e-15 87.0 79 54.4
QL02p104342 Quercus lobata HOM05D000166 ORTHO05D013215 1.7e-15 87.0 79 54.4
PGSC0003DMG400018265 Solanum tuberosum HOM05D000166 ORTHO05D013215 2.9e-15 86.3 80 51.2
CiPaw.15G109500 Carya illinoinensis HOM05D000166 ORTHO05D000812 1.1e-14 84.3 138 39.9
arahy.Tifrunner.gnm1.ann1.50KXA0 Arachis hypogaea HOM05D001903 ORTHO05D013215 2.5e-14 83.2 68 57.4
vmacro01632 Vaccinium macrocarpon HOM05D000166 ORTHO05D000812 1.6e-13 80.5 77 53.2
Os05g0486100 Oryza sativa ssp. japonica HOM05D000166 ORTHO05D000812 6.1e-13 78.6 126 77.8
PSO170G0490 Papaver somniferum HOM05D000166 ORTHO05D000812 6.1e-13 78.6 203 39.4
Zm00001eb149780 Zea mays HOM05D000166 ORTHO05D000812 6.1e-13 78.6 200 56.0
arahy.Tifrunner.gnm1.ann1.ZC4B2S Arachis hypogaea HOM05D001903 ORTHO05D001847 1.8e-12 77.0 57 61.4
Sabra04G0159900 Salix brachista HOM05D000166 ORTHO05D000812 3.9e-12 75.9 218 43.1
arahy.Tifrunner.gnm1.ann1.1E0HE3 Arachis hypogaea HOM05D001903 ORTHO05D013215 8.8e-12 74.7 56 60.7
ECA240G3837 Erigeron canadensis HOM05D000166 ORTHO05D000812 1.1e-11 74.3 202 31.2
SEGI_26042 Sequoiadendron giganteum HOM05D000166 ORTHO05D000812 1.1e-11 74.3 71 52.1
SMO361G0541 Selaginella moellendorffii HOM05D000166 ORTHO05D000812 1.5e-11 73.9 105 41.0
Lj2A52G84 Lonicera japonica HOM05D000166 ORTHO05D000812 3.3e-11 72.8 127 48.0
TAR623G1500 Trochodendron aralioides HOM05D000166 ORTHO05D000812 3.3e-11 72.8 201 49.3
Rhsim11G0113700 Rhododendron simsii HOM05D000166 ORTHO05D000812 5.7e-11 72.0 162 30.2
VMungo0251G2911 Vigna mungo HOM05D002683 ORTHO05D007757 1.3e-10 70.9 69 53.6
Lj4g0015940 Lotus japonicus HOM05D000166 ORTHO05D000812 1.7e-10 70.5 201 40.8
CiPaw.15G109200 Carya illinoinensis HOM05D000166 ORTHO05D000812 2.2e-10 70.1 201 30.8
Migut.F01832 Erythranthe guttata HOM05D000166 ORTHO05D000812 2.8e-10 69.7 202 39.6
Glyma.16G101800 Glycine max HOM05D000166 ORTHO05D000812 2.8e-10 69.7 201 45.8
Os12g0210400 Oryza sativa ssp. japonica HOM05D000166 ORTHO05D000812 2.8e-10 69.7 203 46.3
FvH4_6g09020 Fragaria vesca HOM05D000166 ORTHO05D000812 3.7e-10 69.3 127 59.8
FAN14G3482 Fragaria x ananassa HOM05D000166 ORTHO05D000812 3.7e-10 69.3 127 59.8
MD04G1183100 Malus domestica HOM05D000166 ORTHO05D000812 3.7e-10 69.3 197 30.5
Medtr8g070880 Medicago truncatula HOM05D000166 ORTHO05D000812 4.8e-10 68.9 201 46.8
MD12G1196600 Malus domestica HOM05D000166 ORTHO05D000812 6.3e-10 68.6 126 49.2
Psat4g111440 Pisum sativum HOM05D000166 ORTHO05D000812 6.3e-10 68.6 201 41.3
FAN11G0704 Fragaria x ananassa HOM05D000166 ORTHO05D000812 8.2e-10 68.2 163 43.6
Eucgr.A00883 Eucalyptus grandis HOM05D000166 ORTHO05D000812 1.1e-09 67.8 188 42.0
Eucgr.G00038 Eucalyptus grandis HOM05D000166 ORTHO05D000812 1.1e-09 67.8 188 42.6
Cc01_g08200 Coffea canephora HOM05D000166 ORTHO05D000812 1.4e-09 67.4 204 43.6
arahy.Tifrunner.gnm1.ann1.IFP09X Arachis hypogaea HOM05D000166 ORTHO05D000812 1.8e-09 67.0 127 55.1
FAN14G5745 Fragaria x ananassa HOM05D000166 ORTHO05D000812 1.8e-09 67.0 202 42.1
FvH4_6g08970 Fragaria vesca HOM05D000166 ORTHO05D000812 2.4e-09 66.6 202 41.6
HanXRQChr03g0070851 Helianthus annuus HOM05D000166 ORTHO05D013215 2.4e-09 66.6 80 46.2
HanXRQChr03g0070861 Helianthus annuus HOM05D000166 ORTHO05D013215 2.4e-09 66.6 80 46.2
MD04G1181800 Malus domestica HOM05D000166 ORTHO05D000812 3.1e-09 66.2 201 38.8
FAN09G1712 Fragaria x ananassa HOM05D000166 ORTHO05D000812 4.1e-09 65.9 127 58.3
Nn5g27102 Nelumbo nucifera HOM05D000166 ORTHO05D000812 4.1e-09 65.9 197 44.7
CiPaw.16G077900 Carya illinoinensis HOM05D000166 ORTHO05D000812 5.3e-09 65.5 127 61.4
Prupe.6G301700 Prunus persica HOM05D000166 ORTHO05D000812 5.3e-09 65.5 201 41.3
TAR624G1112 Trochodendron aralioides HOM05D000166 ORTHO05D000812 5.3e-09 65.5 127 64.6
arahy.Tifrunner.gnm1.ann1.UZD152 Arachis hypogaea HOM05D000166 ORTHO05D000812 7.0e-09 65.1 127 54.3
Medtr8g070890 Medicago truncatula HOM05D000166 ORTHO05D000812 7.0e-09 65.1 201 41.3
HanXRQChr12g0364211 Helianthus annuus HOM05D000166 ORTHO05D013215 9.1e-09 64.7 116 38.8
MBI03_g38314_MAGBIO Magnolia biondii HOM05D000166 ORTHO05D000812 9.1e-09 64.7 202 45.0
CiPaw.16G078200 Carya illinoinensis HOM05D000166 ORTHO05D000812 1.2e-08 64.3 202 44.1
PSO017G4695 Papaver somniferum HOM05D000166 ORTHO05D000812 1.2e-08 64.3 128 48.4
CSS0049398 Camellia sinensis var. sinensis HOM05D000166 ORTHO05D000812 1.6e-08 63.9 201 45.8
CiPaw.16G077700 Carya illinoinensis HOM05D000166 ORTHO05D000812 1.6e-08 63.9 201 44.3
FAN05G2974 Fragaria x ananassa HOM05D000166 ORTHO05D000812 1.6e-08 63.9 127 51.2
VMungo0251G0955 Vigna mungo HOM05D000166 ORTHO05D000812 1.6e-08 63.9 201 44.8
Zm00001eb138310 Zea mays HOM05D000166 ORTHO05D000812 1.6e-08 63.9 199 29.1
Nitab4.5_0000381g0160 Nicotiana tabacum HOM05D000166 ORTHO05D000812 2.0e-08 63.5 201 43.3
HPP92_026672 Vanilla planifolia HOM05D000166 ORTHO05D000812 2.0e-08 63.5 198 40.4
Zm00001eb015720 Zea mays HOM05D000166 ORTHO05D000812 2.0e-08 63.5 201 39.3
CiPaw.16G078300 Carya illinoinensis HOM05D000166 ORTHO05D000812 2.6e-08 63.2 201 44.3
ClCG02G000020 Citrullus lanatus HOM05D000166 ORTHO05D000812 2.6e-08 63.2 202 29.2
TWI09G0049 Tripterygium wilfordii HOM05D000166 ORTHO05D000812 2.6e-08 63.2 127 61.4
HPP92_027376 Vanilla planifolia HOM05D000166 ORTHO05D000812 2.6e-08 63.2 201 40.3
CANSAT21G2566 Cannabis sativa HOM05D000166 ORTHO05D000812 4.5e-08 62.4 201 37.8
TAR381G1362 Trochodendron aralioides HOM05D000166 ORTHO05D000812 4.5e-08 62.4 201 44.8
Dinv25390 Davidia involucrata HOM05D000166 ORTHO05D000812 5.9e-08 62.0 128 51.6
TPR.G6137 Trifolium pratense HOM05D000166 ORTHO05D000812 5.9e-08 62.0 198 47.0
HPP92_018075 Vanilla planifolia HOM05D000166 ORTHO05D000812 5.9e-08 62.0 198 44.9
QL06p053582 Quercus lobata HOM05D000166 ORTHO05D000812 7.7e-08 61.6 201 43.3
Prupe.6G301600 Prunus persica HOM05D000166 ORTHO05D000812 1.0e-07 61.2 127 52.0
HPP92_019032 Vanilla planifolia HOM05D000166 ORTHO05D000812 1.0e-07 61.2 198 39.4
Glyma.08G266100 Glycine max HOM05D000166 ORTHO05D000812 1.3e-07 60.8 201 43.8
Glyma.15G124900 Glycine max HOM05D000166 ORTHO05D000812 1.3e-07 60.8 126 31.7
MD05G1095300 Malus domestica HOM05D000053 ORTHO05D000448 1.3e-07 60.8 109 35.8
Os03g0329700 Oryza sativa ssp. japonica HOM05D000166 ORTHO05D000812 1.3e-07 60.8 201 38.8
PGR031G0177 Punica granatum HOM05D000166 ORTHO05D000812 1.3e-07 60.8 127 60.6
RcHm_v2.0_Chr5g0042311 Rosa chinensis HOM05D000166 ORTHO05D000812 1.3e-07 60.8 201 27.4
CANSAT21G0842 Cannabis sativa HOM05D000166 ORTHO05D000812 1.7e-07 60.5 201 37.8
CAN.G1018.5 Capsicum annuum HOM05D000166 ORTHO05D000812 1.7e-07 60.5 201 44.3
Manes.08G165600 Manihot esculenta HOM05D000166 ORTHO05D000812 1.7e-07 60.5 127 60.6
TWI53G0865 Tripterygium wilfordii HOM05D000166 ORTHO05D000812 1.7e-07 60.5 126 52.4
Lsat_1_v5_gn_7_30600 Lactuca sativa HOM05D000166 ORTHO05D000812 2.9e-07 59.7 127 51.2
Lsat_1_v5_gn_9_81761 Lactuca sativa HOM05D000166 ORTHO05D000812 2.9e-07 59.7 222 42.3
Nn5g27105 Nelumbo nucifera HOM05D000166 ORTHO05D000812 2.9e-07 59.7 201 37.3
Dinv25392 Davidia involucrata HOM05D000166 ORTHO05D000812 3.8e-07 59.3 128 50.8
Gohir.D02G103000 Gossypium hirsutum HOM05D000166 ORTHO05D000812 3.8e-07 59.3 127 52.0
Gorai.005G116800 Gossypium raimondii HOM05D000166 ORTHO05D000812 3.8e-07 59.3 127 52.0
SGA_v2.0_scaffold122G33223 Striga asiatica HOM05D000166 ORTHO05D000812 3.8e-07 59.3 116 36.2
Cc03_g15230 Coffea canephora HOM05D000166 ORTHO05D000812 5.0e-07 58.9 203 37.4
Phvul.003G273700 Phaseolus vulgaris HOM05D000166 ORTHO05D000812 5.0e-07 58.9 127 59.8
MSTRG.8184 Avicennia marina HOM05D000166 ORTHO05D000812 6.5e-07 58.5 202 39.1
RcHm_v2.0_Chr3g0459271 Rosa chinensis HOM05D000166 ORTHO05D000812 6.5e-07 58.5 128 60.2
Actinidia01645 Actinidia chinensis HOM05D000166 ORTHO05D000812 8.5e-07 58.2 202 36.1
Duzib116G0021 Durio zibethinus HOM05D000166 ORTHO05D000812 8.5e-07 58.2 127 51.2
Glyma.09G018800 Glycine max HOM05D000166 ORTHO05D000812 8.5e-07 58.2 126 31.0
Potri.016G144100 Populus trichocarpa HOM05D000166 ORTHO05D000812 8.5e-07 58.2 128 56.2
Rhsim11G0113100 Rhododendron simsii HOM05D000166 ORTHO05D000812 8.5e-07 58.2 122 44.3
SEGI_22779 Sequoiadendron giganteum HOM05D000166 ORTHO05D000812 8.5e-07 58.2 95 37.9
TAR383G0658 Trochodendron aralioides HOM05D000166 ORTHO05D000812 8.5e-07 58.2 127 60.6
CSS0004349 Camellia sinensis var. sinensis HOM05D001903 ORTHO05D013215 1.1e-06 57.8 55 47.3
DCAR_001957 Daucus carota HOM05D000166 ORTHO05D000812 1.1e-06 57.8 128 57.0
Dinv30980 Davidia involucrata HOM05D000166 ORTHO05D000812 1.1e-06 57.8 113 34.5
TWI09G0516 Tripterygium wilfordii HOM05D000166 ORTHO05D000812 1.1e-06 57.8 124 54.0
Eucgr.A00882 Eucalyptus grandis HOM05D000166 ORTHO05D000812 1.5e-06 57.4 128 50.8
Eucgr.A00885 Eucalyptus grandis HOM05D000166 ORTHO05D000812 1.5e-06 57.4 128 51.6
Gohir.A02G087900 Gossypium hirsutum HOM05D000166 ORTHO05D000812 1.5e-06 57.4 127 51.2
MBI02_g46468_MAGBIO Magnolia biondii HOM05D000071 ORTHO05D013215 1.5e-06 57.4 98 39.8
Peaxi162Scf00194g00931 Petunia axillaris HOM05D000166 ORTHO05D000812 1.5e-06 57.4 125 32.8
vmacro08966 Vaccinium macrocarpon HOM05D000166 ORTHO05D000812 1.5e-06 57.4 126 51.6
Aqoxy2G00621 Aquilegia oxysepala HOM05D000166 ORTHO05D000812 1.9e-06 57.0 128 50.8
CsaV3_3G032920 Cucumis sativus L. HOM05D000166 ORTHO05D000812 1.9e-06 57.0 125 50.4
HanXRQChr01g0020461 Helianthus annuus HOM05D000166 ORTHO05D000812 1.9e-06 57.0 127 49.6
PGR004G2640 Punica granatum HOM05D000166 ORTHO05D000812 1.9e-06 57.0 188 41.5
FAN21G2710 Fragaria x ananassa HOM05D000166 ORTHO05D000812 2.5e-06 56.6 238 34.0
Sabra06G0089300 Salix brachista HOM05D000166 ORTHO05D000812 2.5e-06 56.6 202 43.6
PGSC0003DMG400008403 Solanum tuberosum HOM05D000166 ORTHO05D000812 2.5e-06 56.6 201 43.3
arahy.Tifrunner.gnm1.ann1.J78N5P Arachis hypogaea HOM05D000166 ORTHO05D013215 3.2e-06 56.2 198 31.8
Eucgr.G00040 Eucalyptus grandis HOM05D000166 ORTHO05D000812 3.2e-06 56.2 127 48.8
Solyc10g085670.2 Solanum lycopersicum HOM05D000166 ORTHO05D000812 3.2e-06 56.2 201 43.8
Sopen10g035090 Solanum pennellii HOM05D000166 ORTHO05D000812 3.2e-06 56.2 201 43.8
Thecc.08G166400 Theobroma cacao HOM05D000166 ORTHO05D000812 3.2e-06 56.2 126 50.8
ATR0602G263 Amborella trichopoda HOM05D000166 ORTHO05D000812 4.2e-06 55.8 199 39.2
EL10Ac4g07576 Beta vulgaris HOM05D000053 ORTHO05D000035 4.2e-06 55.8 83 41.0
ECA248G3830 Erigeron canadensis HOM05D000166 ORTHO05D000812 4.2e-06 55.8 126 50.8
Potri.006G114400 Populus trichocarpa HOM05D000166 ORTHO05D000812 4.2e-06 55.8 202 38.1
Prupe.6G301200 Prunus persica HOM05D000166 ORTHO05D000812 4.2e-06 55.8 126 50.0
Solyc01g102700.4 Solanum lycopersicum HOM05D000166 ORTHO05D000812 4.2e-06 55.8 42 64.3
Sopen01g045110 Solanum pennellii HOM05D000166 ORTHO05D000812 4.2e-06 55.8 42 64.3
Thecc.08G169300 Theobroma cacao HOM05D041214 ORTHO05D025128 4.2e-06 55.8 93 39.8
GSVIVG01023113001 Vitis vinifera HOM05D000166 ORTHO05D000812 4.2e-06 55.8 200 37.0
CSS0016627 Camellia sinensis var. sinensis HOM05D000166 ORTHO05D000812 5.5e-06 55.5 201 37.8
CSS0033200 Camellia sinensis var. sinensis HOM05D000166 ORTHO05D000812 5.5e-06 55.5 201 37.8
AUR62032501 Chenopodium quinoa HOM05D000166 ORTHO05D000812 5.5e-06 55.5 180 38.9
ECA236G3350 Erigeron canadensis HOM05D000166 ORTHO05D000812 5.5e-06 55.5 201 35.8
Aqoxy2G00620 Aquilegia oxysepala HOM05D000166 ORTHO05D000812 7.2e-06 55.1 127 53.5
MELO3C009089.2 Cucumis melo HOM05D000166 ORTHO05D000812 7.2e-06 55.1 125 50.4
Nn4g26697 Nelumbo nucifera HOM05D000166 ORTHO05D000812 7.2e-06 55.1 128 40.6
Nitab4.5_0006947g0040 Nicotiana tabacum HOM05D000166 ORTHO05D000812 7.2e-06 55.1 127 47.2
Potri.004G232500 Populus trichocarpa HOM05D000166 ORTHO05D000812 7.2e-06 55.1 119 31.9
Eucgr.K01321 Eucalyptus grandis HOM05D000166 ORTHO05D000812 9.4e-06 54.7 120 51.7


User provided reference genes

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