Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb088570 Zea mays HOM05D002350 ORTHO05D000091 5.1e-84 314.3 153 100.0
Zm00001eb088520 Zea mays HOM05D002350 ORTHO05D000091 3.9e-76 288.1 142 97.9
Os01g0197900 Oryza sativa ssp. japonica HOM05D002350 ORTHO05D000091 1.3e-31 140.2 155 51.0
Os01g0198000 Oryza sativa ssp. japonica HOM05D002350 ORTHO05D000091 4.7e-29 131.7 155 47.7
Solyc12g008420.3 Solanum lycopersicum HOM05D002350 ORTHO05D000091 1.5e-19 100.1 150 38.7
Sopen12g003370 Solanum pennellii HOM05D002350 ORTHO05D000091 1.5e-19 100.1 150 38.7
PGSC0003DMG401000361 Solanum tuberosum HOM05D002350 ORTHO05D000091 3.4e-19 99.0 150 38.7
Actinidia32657 Actinidia chinensis HOM05D002350 ORTHO05D000091 7.5e-19 97.8 147 40.1
Migut.K00531 Erythranthe guttata HOM05D002350 ORTHO05D000091 9.8e-19 97.4 147 40.8
PSO210G2001 Papaver somniferum HOM05D002350 ORTHO05D000091 9.8e-19 97.4 147 38.8
PSO210G7085 Papaver somniferum HOM05D002350 ORTHO05D000091 2.9e-18 95.9 147 38.1
HanXRQChr16g0503791 Helianthus annuus HOM05D002350 ORTHO05D000091 6.4e-18 94.7 150 42.0
CANSAT56G1437 Cannabis sativa HOM05D002350 ORTHO05D000091 1.9e-17 93.2 148 41.2
RcHm_v2.0_Chr2g0091731 Rosa chinensis HOM05D002350 ORTHO05D000091 3.2e-17 92.4 148 38.5
Lj4C392G1 Lonicera japonica HOM05D002350 ORTHO05D000091 4.1e-17 92.0 147 38.1
CAN.G160.37 Capsicum annuum HOM05D002350 ORTHO05D000091 7.1e-17 91.3 148 40.5
Nitab4.5_0001354g0020 Nicotiana tabacum HOM05D002350 ORTHO05D000091 1.2e-16 90.5 148 39.2
Phvul.004G176400 Phaseolus vulgaris HOM05D002350 ORTHO05D000091 1.2e-16 90.5 154 39.0
CAN.G90.12 Capsicum annuum HOM05D002350 ORTHO05D000091 1.6e-16 90.1 148 39.2
MSTRG.10607 Avicennia marina HOM05D002350 ORTHO05D000091 2.1e-16 89.7 147 38.8
HanXRQChr16g0503771 Helianthus annuus HOM05D002350 ORTHO05D000091 2.1e-16 89.7 147 40.1
Glyma.01G008700 Glycine max HOM05D002350 ORTHO05D000091 2.7e-16 89.4 149 40.9
Nitab4.5_0000165g0030 Nicotiana tabacum HOM05D002350 ORTHO05D000091 2.7e-16 89.4 148 39.2
Cc06_g10360 Coffea canephora HOM05D002350 ORTHO05D000091 4.6e-16 88.6 147 40.1
MBI04_g40931_MAGBIO Magnolia biondii HOM05D002350 ORTHO05D000091 4.6e-16 88.6 147 38.1
Gohir.D07G008700 Gossypium hirsutum HOM05D002350 ORTHO05D000091 7.8e-16 87.8 146 39.0
MBI04_g17295_MAGBIO Magnolia biondii HOM05D002350 ORTHO05D000091 7.8e-16 87.8 147 37.4
Eucgr.C03763 Eucalyptus grandis HOM05D002350 ORTHO05D000091 1.3e-15 87.0 148 37.2
Solyc06g051190.3 Solanum lycopersicum HOM05D002350 ORTHO05D000091 1.3e-15 87.0 121 43.8
Gohir.A07G008300 Gossypium hirsutum HOM05D002350 ORTHO05D000091 1.7e-15 86.7 148 40.5
Gorai.001G008800 Gossypium raimondii HOM05D002350 ORTHO05D000091 3.0e-15 85.9 146 39.0
Sc08g0007950 Simmondsia chinensis HOM05D002350 ORTHO05D000091 3.0e-15 85.9 145 37.2
Sopen06g017040 Solanum pennellii HOM05D002350 ORTHO05D000091 3.9e-15 85.5 148 37.8
EL10Ac8g18396 Beta vulgaris HOM05D002350 ORTHO05D000091 5.1e-15 85.1 148 37.8
Nitab4.5_0011131g0010 Nicotiana tabacum HOM05D002350 ORTHO05D000091 5.1e-15 85.1 150 35.3
QL02p042039 Quercus lobata HOM05D002350 ORTHO05D000091 6.6e-15 84.7 148 35.1
SalBow5G4215 Salvia bowleyana HOM05D002350 ORTHO05D000091 6.6e-15 84.7 148 39.2
ECA234G0874 Erigeron canadensis HOM05D002350 ORTHO05D000091 8.6e-15 84.3 147 37.4
Manes.16G110000 Manihot esculenta HOM05D002350 ORTHO05D000091 8.6e-15 84.3 153 34.0
GSVIVG01015313001 Vitis vinifera HOM05D002350 ORTHO05D000091 8.6e-15 84.3 148 35.8
MD15G1195400 Malus domestica HOM05D002350 ORTHO05D000091 1.1e-14 84.0 147 36.7
Lsat_1_v5_gn_5_144600 Lactuca sativa HOM05D002350 ORTHO05D000091 1.9e-14 83.2 147 35.4
Nn8g39091 Nelumbo nucifera HOM05D002350 ORTHO05D000091 1.9e-14 83.2 147 36.1
Oeu064190.1 Olea europaea HOM05D002350 ORTHO05D000091 1.9e-14 83.2 152 37.5
MD02G1064400 Malus domestica HOM05D002350 ORTHO05D000091 2.5e-14 82.8 148 37.8
Potri.006G164400 Populus trichocarpa HOM05D002350 ORTHO05D000091 2.5e-14 82.8 148 36.5
Atru.chr7.1447 Acer truncatum HOM05D002350 ORTHO05D000091 3.3e-14 82.4 148 30.4
CAN.G1642.9 Capsicum annuum HOM05D002350 ORTHO05D000091 4.3e-14 82.0 166 33.7
VMungo0464G0493 Vigna mungo HOM05D002350 ORTHO05D000091 4.3e-14 82.0 151 37.7
Duzib150G1289 Durio zibethinus HOM05D002350 ORTHO05D000091 5.6e-14 81.6 146 33.6
Nitab4.5_0000566g0160 Nicotiana tabacum HOM05D002350 ORTHO05D000091 5.6e-14 81.6 162 33.3
Cfa003192 Carpinus fangiana HOM05D002350 ORTHO05D000091 7.3e-14 81.3 148 34.5
Prupe.7G221200 Prunus persica HOM05D002350 ORTHO05D000091 7.3e-14 81.3 148 37.8
Hund26256 Selenicereus undatus HOM05D002350 ORTHO05D000091 7.3e-14 81.3 153 35.3
PGSC0003DMG400015653 Solanum tuberosum HOM05D002350 ORTHO05D000091 7.3e-14 81.3 121 43.0
Cfa003194 Carpinus fangiana HOM05D002350 ORTHO05D000091 9.5e-14 80.9 146 34.9
CDE05G3285 Ceratophyllum demersum HOM05D002350 ORTHO05D000091 9.5e-14 80.9 148 35.8
RcHm_v2.0_Chr5g0014401 Rosa chinensis HOM05D002350 ORTHO05D000091 9.5e-14 80.9 150 36.0
TAR624G0594 Trochodendron aralioides HOM05D002350 ORTHO05D000091 9.5e-14 80.9 147 36.7
CSS0048603 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 1.2e-13 80.5 148 35.1
Dinv41662 Davidia involucrata HOM05D002350 ORTHO05D000091 2.1e-13 79.7 147 33.3
COL.COLO4_34763 Corchorus olitorius HOM05D002350 ORTHO05D000091 4.7e-13 78.6 146 38.4
Lsat_1_v5_gn_8_96860 Lactuca sativa HOM05D002350 ORTHO05D000091 4.7e-13 78.6 147 34.7
arahy.Tifrunner.gnm1.ann1.2RFB5Y Arachis hypogaea HOM05D002350 ORTHO05D000091 1.1e-12 77.4 148 36.5
Ca_25564_v3 Cicer arietinum L. HOM05D002350 ORTHO05D000091 1.1e-12 77.4 156 36.5
RcHm_v2.0_Chr2g0091711 Rosa chinensis HOM05D002350 ORTHO05D000091 1.1e-12 77.4 148 33.1
Aqoxy7G03876 Aquilegia oxysepala HOM05D002350 ORTHO05D000091 1.4e-12 77.0 148 34.5
Duzib168G2169 Durio zibethinus HOM05D002350 ORTHO05D000091 1.4e-12 77.0 146 34.9
FAN19G1217 Fragaria x ananassa HOM05D002350 ORTHO05D000091 1.8e-12 76.6 149 36.2
Psat1g046880 Pisum sativum HOM05D002350 ORTHO05D000091 1.8e-12 76.6 148 35.8
CiPaw.03G226000 Carya illinoinensis HOM05D002350 ORTHO05D000091 2.3e-12 76.3 145 36.6
FvH4_1g05980 Fragaria vesca HOM05D002350 ORTHO05D000091 2.3e-12 76.3 149 35.6
FAN23G2545 Fragaria x ananassa HOM05D002350 ORTHO05D000091 6.8e-12 74.7 149 34.9
Lj2g0003052 Lotus japonicus HOM05D002350 ORTHO05D000091 6.8e-12 74.7 147 36.1
PGR102G2642 Punica granatum HOM05D002350 ORTHO05D000091 6.8e-12 74.7 150 34.7
SGA_v2.0_scaffold501G52502 Striga asiatica HOM05D002350 ORTHO05D000091 6.8e-12 74.7 152 34.9
HanXRQChr16g0507611 Helianthus annuus HOM05D002350 ORTHO05D000091 1.2e-11 73.9 155 34.8
AUR62021426 Chenopodium quinoa HOM05D002350 ORTHO05D000091 1.5e-11 73.6 145 37.2
FAN19G2534 Fragaria x ananassa HOM05D002350 ORTHO05D000091 1.5e-11 73.6 166 34.3
ATR0705G139 Amborella trichopoda HOM05D002350 ORTHO05D000091 2.0e-11 73.2 148 36.5
BraA09t41291Z Brassica rapa HOM05D002350 ORTHO05D000091 2.0e-11 73.2 153 36.6
Lalb_Chr14g0371831 Lupinus albus HOM05D002350 ORTHO05D000091 2.0e-11 73.2 147 34.7
Potri.007G081300 Populus trichocarpa HOM05D002350 ORTHO05D000091 2.0e-11 73.2 146 34.2
Sabra06G0136400 Salix brachista HOM05D002350 ORTHO05D000091 2.0e-11 73.2 148 31.8
C08p42360 Brassica napus HOM05D002350 ORTHO05D000091 2.6e-11 72.8 154 36.4
BolC8t51798H Brassica oleracea HOM05D002350 ORTHO05D000091 2.6e-11 72.8 154 36.4
AUR62021424 Chenopodium quinoa HOM05D002350 ORTHO05D000091 2.6e-11 72.8 148 34.5
ECA236G2339 Erigeron canadensis HOM05D002350 ORTHO05D000091 2.6e-11 72.8 145 35.2
Rhsim03G0237700 Rhododendron simsii HOM05D002350 ORTHO05D000091 2.6e-11 72.8 150 36.0
Rhsim03G0238400 Rhododendron simsii HOM05D002350 ORTHO05D000091 2.6e-11 72.8 150 34.7
Ciclev10007331m.g Citrus clementina HOM05D002350 ORTHO05D000091 3.4e-11 72.4 150 31.3
Cc06_g10350 Coffea canephora HOM05D002350 ORTHO05D000091 3.4e-11 72.4 150 34.7
THA.LOC104808318 Tarenaya hassleriana HOM05D002350 ORTHO05D000091 3.4e-11 72.4 152 36.2
A09p59080 Brassica napus HOM05D002350 ORTHO05D000091 4.4e-11 72.0 147 37.4
FvH4_1g05990 Fragaria vesca HOM05D002350 ORTHO05D000091 4.4e-11 72.0 166 34.3
RcHm_v2.0_Chr2g0091681 Rosa chinensis HOM05D002350 ORTHO05D000091 4.4e-11 72.0 84 47.6
BcaC07g41231 Brassica carinata HOM05D002350 ORTHO05D000091 5.8e-11 71.6 147 36.7
Duzib168G1106 Durio zibethinus HOM05D002350 ORTHO05D000091 5.8e-11 71.6 146 32.2
Thecc.09G101800 Theobroma cacao HOM05D002350 ORTHO05D000091 5.8e-11 71.6 152 33.6
AUR62010903 Chenopodium quinoa HOM05D002350 ORTHO05D000091 7.6e-11 71.2 168 32.1
BcaC06g36654 Brassica carinata HOM05D002350 ORTHO05D000091 9.9e-11 70.9 144 31.9
BolC7t40582H Brassica oleracea HOM05D002350 ORTHO05D000091 9.9e-11 70.9 144 31.9
C07p01790 Brassica napus HOM05D002350 ORTHO05D000091 1.3e-10 70.5 144 31.2
BraA07t27876Z Brassica rapa HOM05D002350 ORTHO05D000091 1.7e-10 70.1 144 31.9
AUR62042309 Chenopodium quinoa HOM05D002350 ORTHO05D000091 1.7e-10 70.1 147 36.7
ClCG03G016200 Citrullus lanatus HOM05D002350 ORTHO05D000091 1.7e-10 70.1 136 33.8
MBI04_g30106_MAGBIO Magnolia biondii HOM05D002350 ORTHO05D000091 1.7e-10 70.1 147 36.1
Medtr6g088660 Medicago truncatula HOM05D002350 ORTHO05D000091 1.7e-10 70.1 149 37.6
Aa31LG8G16870 Aethionema arabicum HOM05D002350 ORTHO05D000091 2.9e-10 69.3 150 34.7
CsaV3_1G039730 Cucumis sativus L. HOM05D002350 ORTHO05D000091 2.9e-10 69.3 149 31.5
Ah.14g083290 Amaranthus hybridus HOM05D002350 ORTHO05D000091 3.8e-10 68.9 145 34.5
A07p00720 Brassica napus HOM05D002350 ORTHO05D000091 3.8e-10 68.9 149 30.2
MELO3C015406.2 Cucumis melo HOM05D002350 ORTHO05D000091 3.8e-10 68.9 149 32.2
FAN26G1444 Fragaria x ananassa HOM05D002350 ORTHO05D000091 3.8e-10 68.9 149 32.2
FAN26G3334 Fragaria x ananassa HOM05D002350 ORTHO05D000091 3.8e-10 68.9 149 32.2
Sed0013258 Sechium edule HOM05D002350 ORTHO05D000091 3.8e-10 68.9 149 31.5
AL3G48270 Arabidopsis lyrata HOM05D002350 ORTHO05D000091 4.9e-10 68.6 148 32.4
C07p01730 Brassica napus HOM05D002350 ORTHO05D000091 8.4e-10 67.8 147 31.3
TPR.G21372 Trifolium pratense HOM05D002350 ORTHO05D000091 8.4e-10 67.8 152 32.2
arahy.Tifrunner.gnm1.ann1.HAD3B9 Arachis hypogaea HOM05D002350 ORTHO05D000091 1.1e-09 67.4 136 33.8
arahy.Tifrunner.gnm1.ann1.9LQV7C Arachis hypogaea HOM05D002350 ORTHO05D000091 1.4e-09 67.0 77 45.5
BcaB08g34892 Brassica carinata HOM05D002350 ORTHO05D000091 1.4e-09 67.0 154 33.1
arahy.Tifrunner.gnm1.ann1.7X0VYH Arachis hypogaea HOM05D002350 ORTHO05D000091 1.9e-09 66.6 77 45.5
A07p00750 Brassica napus HOM05D002350 ORTHO05D000091 1.9e-09 66.6 100 38.0
BraA07t27873Z Brassica rapa HOM05D002350 ORTHO05D000091 1.9e-09 66.6 100 38.0
Sp3g33240 Schrenkiella parvula HOM05D002350 ORTHO05D000091 1.9e-09 66.6 150 30.7
A10p17220 Brassica napus HOM05D002350 ORTHO05D000091 2.4e-09 66.2 147 34.0
AUR62010902 Chenopodium quinoa HOM05D002350 ORTHO05D000091 2.4e-09 66.2 147 33.3
Lj4C391G5 Lonicera japonica HOM05D002350 ORTHO05D000091 5.4e-09 65.1 105 35.2
AT2G19930 Arabidopsis thaliana HOM05D002350 ORTHO05D000091 7.1e-09 64.7 148 30.4
CARHR110340 Cardamine hirsuta HOM05D002350 ORTHO05D000091 7.1e-09 64.7 146 32.9
Carub.0003s3417 Capsella rubella HOM05D002350 ORTHO05D000091 9.2e-09 64.3 146 32.9
SEGI_40988 Sequoiadendron giganteum HOM05D002350 ORTHO05D000091 9.2e-09 64.3 123 35.8
TAR624G0664 Trochodendron aralioides HOM05D002350 ORTHO05D000091 9.2e-09 64.3 90 42.2
BcaB03g16778 Brassica carinata HOM05D002350 ORTHO05D000091 1.2e-08 63.9 145 30.3
BraA10t43806Z Brassica rapa HOM05D002350 ORTHO05D000091 1.2e-08 63.9 157 31.8
AT2G19910 Arabidopsis thaliana HOM05D002350 ORTHO05D000091 1.6e-08 63.5 146 30.8
BcaB03g16779 Brassica carinata HOM05D002350 ORTHO05D000091 1.6e-08 63.5 145 29.7
BraA07t27871Z Brassica rapa HOM05D002350 ORTHO05D000091 1.6e-08 63.5 153 29.4
DCAR_010692 Daucus carota HOM05D002350 ORTHO05D000091 1.6e-08 63.5 146 27.4
Carub.0003s3418 Capsella rubella HOM05D002350 ORTHO05D000091 2.1e-08 63.2 144 29.9
AL3G48310 Arabidopsis lyrata HOM05D002350 ORTHO05D000091 3.5e-08 62.4 146 31.5
A07p00790 Brassica napus HOM05D000602 ORTHO05D001147 3.5e-08 62.4 128 31.2
CANSAT56G4254 Cannabis sativa HOM05D002350 ORTHO05D000091 6.0e-08 61.6 118 35.6
Thhalv10001897m.g Eutrema salsugineum HOM05D002350 ORTHO05D000091 6.0e-08 61.6 100 37.0
BcaB03g16780 Brassica carinata HOM05D002350 ORTHO05D000091 7.8e-08 61.2 145 29.7
CSS0027092 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 7.8e-08 61.2 84 44.0
CSS0040795 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 7.8e-08 61.2 84 44.0
CSS0048273 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 7.8e-08 61.2 84 44.0
EL10Ac8g18397 Beta vulgaris HOM05D002350 ORTHO05D000091 1.0e-07 60.8 128 35.2
C09p52580 Brassica napus HOM05D002350 ORTHO05D000091 3.0e-07 59.3 131 35.1
BolC9t58124H Brassica oleracea HOM05D002350 ORTHO05D000091 3.9e-07 58.9 76 43.4
AT2G19920 Arabidopsis thaliana HOM05D002350 ORTHO05D000091 8.6e-07 57.8 147 30.6
Eucgr.C02780 Eucalyptus grandis HOM05D000822 ORTHO05D004949 1.5e-06 57.0 137 32.8
Thhalv10001896m.g Eutrema salsugineum HOM05D002350 ORTHO05D000091 1.5e-06 57.0 88 38.6
BcaC06g36656 Brassica carinata HOM05D002350 ORTHO05D000091 1.9e-06 56.6 125 31.2
C07p01760 Brassica napus HOM05D002350 ORTHO05D000091 1.9e-06 56.6 125 31.2
BolC7t40580H Brassica oleracea HOM05D002350 ORTHO05D000091 1.9e-06 56.6 125 31.2
PSO832G0190 Papaver somniferum HOM05D002350 ORTHO05D000091 1.9e-06 56.6 174 29.9
Haze_25814 Corylus avellana HOM05D002350 ORTHO05D000091 4.3e-06 55.5 106 31.1
BcaC06g36662 Brassica carinata HOM05D002350 ORTHO05D000091 5.6e-06 55.1 149 27.5
Pp3c6_8520 Physcomitrium patens HOM05D002350 ORTHO05D000091 7.3e-06 54.7 156 30.1
Pp3c6_8521 Physcomitrium patens HOM05D002350 ORTHO05D000091 7.3e-06 54.7 156 30.1
MSTRG.19559 Avicennia marina HOM05D002350 ORTHO05D000091 9.6e-06 54.3 104 32.7
BolC7t40573H Brassica oleracea HOM05D002350 ORTHO05D000091 9.6e-06 54.3 86 36.0
Medtr1g032590 Medicago truncatula HOM05D000822 ORTHO05D002021 9.6e-06 54.3 75 36.0
Phvul.003G016800 Phaseolus vulgaris HOM05D000822 ORTHO05D002021 9.6e-06 54.3 71 39.4


User provided reference genes

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