Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb087390 Zea mays HOM05D004025 ORTHO05D004929 7.0e-95 350.5 167 100.0
Zm00001eb168670 Zea mays HOM05D004025 ORTHO05D004929 1.1e-68 263.5 173 76.9
PGR079G0002 Punica granatum HOM05D004025 ORTHO05D004929 3.8e-48 195.3 180 57.2
PGR119G0653 Punica granatum HOM05D004025 ORTHO05D004929 3.8e-48 195.3 180 57.2
Lj4g0019129 Lotus japonicus HOM05D004025 ORTHO05D004929 4.2e-47 191.8 179 55.3
Cc07_g18300 Coffea canephora HOM05D004025 ORTHO05D004929 5.5e-47 191.4 180 55.0
Nn1g06239 Nelumbo nucifera HOM05D004025 ORTHO05D004929 1.6e-46 189.9 179 55.9
Haze_25220 Corylus avellana HOM05D004025 ORTHO05D004929 2.1e-46 189.5 180 56.1
Hma1.2p1_0476F.1_g160915 Hydrangea macrophylla HOM05D004025 ORTHO05D004929 2.7e-46 189.1 180 57.2
Manes.13G083201 Manihot esculenta HOM05D004025 ORTHO05D004929 2.7e-46 189.1 180 57.8
VMungo0251G2658 Vigna mungo HOM05D004025 ORTHO05D004929 2.7e-46 189.1 179 53.6
Aqoxy6G00339 Aquilegia oxysepala HOM05D004025 ORTHO05D004929 3.5e-46 188.7 179 56.4
Cpa.g.sc42.143 Carica papaya HOM05D004025 ORTHO05D004929 3.5e-46 188.7 180 55.6
Ca_17642_v3 Cicer arietinum L. HOM05D002604 ORTHO05D004929 3.5e-46 188.7 179 54.7
Peaxi162Scf00589g00320 Petunia axillaris HOM05D004025 ORTHO05D004929 3.5e-46 188.7 179 54.2
Sc09g0002360 Simmondsia chinensis HOM05D004025 ORTHO05D004929 3.5e-46 188.7 180 55.6
Lalb_Chr08g0238391 Lupinus albus HOM05D004025 ORTHO05D004929 6.0e-46 188.0 179 54.2
Manes.12G154400 Manihot esculenta HOM05D004025 ORTHO05D004929 6.0e-46 188.0 180 57.2
Phvul.002G271500 Phaseolus vulgaris HOM05D004025 ORTHO05D004929 6.0e-46 188.0 179 53.1
Psat7g045720 Pisum sativum HOM05D004025 ORTHO05D004929 6.0e-46 188.0 179 54.2
Glyma.05G191200 Glycine max HOM05D004025 ORTHO05D004929 7.9e-46 187.6 179 53.1
Cfa002885 Carpinus fangiana HOM05D004025 ORTHO05D004929 1.0e-45 187.2 180 55.6
CiPaw.03G122700 Carya illinoinensis HOM05D004025 ORTHO05D004929 1.0e-45 187.2 180 55.6
Sabra07G0089100 Salix brachista HOM05D004025 ORTHO05D004929 1.0e-45 187.2 180 56.7
SGA_v2.0_scaffold132G34527 Striga asiatica HOM05D004025 ORTHO05D004929 1.0e-45 187.2 158 57.0
Glyma.08G156400 Glycine max HOM05D004025 ORTHO05D004929 1.3e-45 186.8 179 53.1
Oeu047692.2 Olea europaea HOM05D004025 ORTHO05D004929 1.3e-45 186.8 161 58.4
QL06p028841 Quercus lobata HOM05D004025 ORTHO05D004929 1.3e-45 186.8 181 56.4
Nitab4.5_0002667g0010 Nicotiana tabacum HOM05D004025 ORTHO05D004929 1.8e-45 186.4 171 54.4
GSVIVG01026496001 Vitis vinifera HOM05D004025 ORTHO05D004929 1.8e-45 186.4 179 55.3
CSS0008777 Camellia sinensis var. sinensis HOM05D004025 ORTHO05D004929 2.3e-45 186.0 179 53.1
CiPaw.04G083500 Carya illinoinensis HOM05D004025 ORTHO05D004929 2.3e-45 186.0 181 55.2
Migut.L00888 Erythranthe guttata HOM05D004025 ORTHO05D004929 2.3e-45 186.0 156 57.7
Medtr8g093570 Medicago truncatula HOM05D004025 ORTHO05D004929 2.3e-45 186.0 170 54.7
VMungo1309G0837 Vigna mungo HOM05D004025 ORTHO05D004929 2.3e-45 186.0 179 53.6
ClCG01G015430 Citrullus lanatus HOM05D004025 ORTHO05D004929 3.0e-45 185.7 180 56.1
Glyma.06G152800 Glycine max HOM05D004025 ORTHO05D004929 3.0e-45 185.7 179 54.2
Nitab4.5_0005674g0010 Nicotiana tabacum HOM05D004025 ORTHO05D004929 3.0e-45 185.7 179 53.1
Rhsim10G0135700 Rhododendron simsii HOM05D004025 ORTHO05D004929 3.0e-45 185.7 179 54.7
CANSAT01G1331 Cannabis sativa HOM05D004025 ORTHO05D004929 3.9e-45 185.3 180 55.0
Glyma.04G213400 Glycine max HOM05D004025 ORTHO05D004929 3.9e-45 185.3 179 54.7
Gohir.A12G090600 Gossypium hirsutum HOM05D004025 ORTHO05D004929 3.9e-45 185.3 181 55.8
Gohir.D12G084000 Gossypium hirsutum HOM05D004025 ORTHO05D004929 3.9e-45 185.3 181 55.8
Gorai.008G094100 Gossypium raimondii HOM05D004025 ORTHO05D004929 3.9e-45 185.3 181 55.8
RcHm_v2.0_Chr2g0120731 Rosa chinensis HOM05D004025 ORTHO05D004929 3.9e-45 185.3 180 54.4
arahy.Tifrunner.gnm1.ann1.P4XMCK Arachis hypogaea HOM05D004025 ORTHO05D004929 5.1e-45 184.9 176 54.0
HPP92_019399 Vanilla planifolia HOM05D004025 ORTHO05D004929 5.1e-45 184.9 175 56.6
MELO3C008054.2 Cucumis melo HOM05D004025 ORTHO05D004929 6.7e-45 184.5 180 56.1
Nn5g28584 Nelumbo nucifera HOM05D004025 ORTHO05D004929 6.7e-45 184.5 179 55.9
MSTRG.2662 Avicennia marina HOM05D004025 ORTHO05D004929 8.7e-45 184.1 161 57.1
Ca_16939_v3 Cicer arietinum L. HOM05D004025 ORTHO05D004929 8.7e-45 184.1 179 53.1
Ca_16958_v3 Cicer arietinum L. HOM05D004025 ORTHO05D004929 8.7e-45 184.1 179 53.1
Potri.005G059000 Populus trichocarpa HOM05D004025 ORTHO05D004929 8.7e-45 184.1 180 56.1
Potri.007G109000 Populus trichocarpa HOM05D004025 ORTHO05D004929 8.7e-45 184.1 180 55.6
PSO541G3336 Papaver somniferum HOM05D004025 ORTHO05D004929 1.1e-44 183.7 167 58.1
SalBow1G5432 Salvia bowleyana HOM05D004025 ORTHO05D004929 1.1e-44 183.7 157 57.3
Actinidia06630 Actinidia chinensis HOM05D004025 ORTHO05D004929 1.5e-44 183.3 179 54.2
ATR0721G093 Amborella trichopoda HOM05D004025 ORTHO05D004929 1.5e-44 183.3 180 55.0
COL.COLO4_35712 Corchorus olitorius HOM05D004025 ORTHO05D004929 1.5e-44 183.3 180 54.4
MD09G1261800 Malus domestica HOM05D004025 ORTHO05D004929 1.5e-44 183.3 162 57.4
Phvul.009G149800 Phaseolus vulgaris HOM05D004025 ORTHO05D004929 1.5e-44 183.3 170 54.1
CsaV3_6G041660 Cucumis sativus L. HOM05D004025 ORTHO05D004929 1.9e-44 183.0 157 59.9
TPR.G34649 Trifolium pratense HOM05D004025 ORTHO05D004929 1.9e-44 183.0 172 53.5
PSO675G2111 Papaver somniferum HOM05D004025 ORTHO05D004929 2.5e-44 182.6 174 56.9
Sed0015970 Sechium edule HOM05D004025 ORTHO05D004929 2.5e-44 182.6 180 56.1
CAN.G652.7 Capsicum annuum HOM05D004025 ORTHO05D004929 3.3e-44 182.2 160 56.9
Lalb_Chr12g0203161 Lupinus albus HOM05D004025 ORTHO05D004929 3.3e-44 182.2 170 52.9
Solyc11g005910.2 Solanum lycopersicum HOM05D004025 ORTHO05D004929 3.3e-44 182.2 156 57.7
Sopen11g001850 Solanum pennellii HOM05D004025 ORTHO05D004929 3.3e-44 182.2 156 57.7
Ciclev10000085m.g Citrus clementina HOM05D004025 ORTHO05D004929 4.3e-44 181.8 179 53.1
Lj1g0010712 Lotus japonicus HOM05D004025 ORTHO05D004929 4.3e-44 181.8 179 52.0
MD17G1256600 Malus domestica HOM05D004025 ORTHO05D004929 7.4e-44 181.0 164 55.5
AL8G41330 Arabidopsis lyrata HOM05D004025 ORTHO05D004929 9.7e-44 180.6 164 54.9
AT5G64070 Arabidopsis thaliana HOM05D004025 ORTHO05D004929 9.7e-44 180.6 164 54.9
Eucgr.L02369 Eucalyptus grandis HOM05D004025 ORTHO05D004929 9.7e-44 180.6 170 56.5
Lj4C845G3 Lonicera japonica HOM05D004025 ORTHO05D004929 9.7e-44 180.6 180 56.7
Psat0s2140g0080 Pisum sativum HOM05D004025 ORTHO05D004929 1.3e-43 180.3 188 51.1
Thecc.01G130400 Theobroma cacao HOM05D004025 ORTHO05D004929 1.3e-43 180.3 181 54.7
TWI31G0593 Tripterygium wilfordii HOM05D004025 ORTHO05D004929 1.3e-43 180.3 181 54.1
BcaB07g29718 Brassica carinata HOM05D004025 ORTHO05D004929 1.6e-43 179.9 164 56.1
DCAR_014341 Daucus carota HOM05D004025 ORTHO05D004929 1.6e-43 179.9 179 53.6
FAN28G0438 Fragaria x ananassa HOM05D004025 ORTHO05D004929 1.6e-43 179.9 182 54.9
PGSC0003DMG401028661 Solanum tuberosum HOM05D004025 ORTHO05D004929 1.6e-43 179.9 156 57.1
BcaB02g09789 Brassica carinata HOM05D004025 ORTHO05D004929 2.2e-43 179.5 164 55.5
FAN26G1692 Fragaria x ananassa HOM05D004025 ORTHO05D004929 2.2e-43 179.5 182 54.9
vmacro12812 Vaccinium macrocarpon HOM05D004025 ORTHO05D004929 2.8e-43 179.1 179 54.2
EL10Ac4g09596 Beta vulgaris HOM05D004025 ORTHO05D004929 3.7e-43 178.7 181 53.6
Dinv24344 Davidia involucrata HOM05D004025 ORTHO05D004929 3.7e-43 178.7 180 55.0
FvH4_1g24240 Fragaria vesca HOM05D004025 ORTHO05D004929 3.7e-43 178.7 182 54.4
TAR381G0182 Trochodendron aralioides HOM05D004025 ORTHO05D004929 3.7e-43 178.7 179 54.7
Aa31LG1G17850 Aethionema arabicum HOM05D004025 ORTHO05D004929 4.8e-43 178.3 164 54.9
BcaC01g02663 Brassica carinata HOM05D004025 ORTHO05D004929 4.8e-43 178.3 164 54.9
A06p30780 Brassica napus HOM05D004025 ORTHO05D004929 4.8e-43 178.3 164 54.9
C03p62200 Brassica napus HOM05D004025 ORTHO05D004929 4.8e-43 178.3 164 54.9
BolC3t18483H Brassica oleracea HOM05D004025 ORTHO05D004929 4.8e-43 178.3 164 54.9
BraA06t26020Z Brassica rapa HOM05D004025 ORTHO05D004929 4.8e-43 178.3 164 54.9
FAN23G0558 Fragaria x ananassa HOM05D004025 ORTHO05D004929 4.8e-43 178.3 182 54.9
FAN23G0951 Fragaria x ananassa HOM05D004025 ORTHO05D004929 4.8e-43 178.3 182 54.9
unitig_52.g17244 Utricularia gibba HOM05D004025 ORTHO05D004929 4.8e-43 178.3 155 54.8
Carub.0008s2485 Capsella rubella HOM05D004025 ORTHO05D004929 6.3e-43 177.9 164 54.9
BcaC03g18241 Brassica carinata HOM05D004025 ORTHO05D004929 1.1e-42 177.2 165 55.2
A02p43140 Brassica napus HOM05D004025 ORTHO05D004929 1.4e-42 176.8 165 55.2
BraA02t09234Z Brassica rapa HOM05D004025 ORTHO05D004929 1.4e-42 176.8 165 55.2
CARHR277980 Cardamine hirsuta HOM05D004025 ORTHO05D004929 1.4e-42 176.8 164 54.3
Ah.06g190860 Amaranthus hybridus HOM05D004025 ORTHO05D004929 1.8e-42 176.4 177 53.7
Lsat_1_v5_gn_8_116820 Lactuca sativa HOM05D004025 ORTHO05D004929 1.8e-42 176.4 156 56.4
TWI75G0726 Tripterygium wilfordii HOM05D004025 ORTHO05D004929 1.8e-42 176.4 181 54.1
BolC2t12384H Brassica oleracea HOM05D004025 ORTHO05D004929 2.4e-42 176.0 165 54.5
Eucgr.I00214 Eucalyptus grandis HOM05D004025 ORTHO05D004929 2.4e-42 176.0 170 55.3
FAN19G0688 Fragaria x ananassa HOM05D004025 ORTHO05D004929 2.4e-42 176.0 182 53.3
HanXRQChr09g0258681 Helianthus annuus HOM05D004025 ORTHO05D004929 2.4e-42 176.0 156 56.4
TAR625G0443 Trochodendron aralioides HOM05D004025 ORTHO05D004929 2.4e-42 176.0 180 55.6
Actinidia20083 Actinidia chinensis HOM05D004025 ORTHO05D004929 3.1e-42 175.6 180 52.2
arahy.Tifrunner.gnm1.ann1.GI519K Arachis hypogaea HOM05D004025 ORTHO05D004929 3.1e-42 175.6 159 54.7
Sp2g27140 Schrenkiella parvula HOM05D004025 ORTHO05D004929 3.1e-42 175.6 164 54.9
THA.LOC104800034 Tarenaya hassleriana HOM05D004025 ORTHO05D004929 4.1e-42 175.3 164 53.7
CDE06G1971 Ceratophyllum demersum HOM05D004025 ORTHO05D004929 5.3e-42 174.9 170 54.1
Thhalv10003553m.g Eutrema salsugineum HOM05D004025 ORTHO05D004929 5.3e-42 174.9 164 54.9
C02p63120 Brassica napus HOM05D004025 ORTHO05D004929 6.9e-42 174.5 165 53.9
Aa31LG3G17690 Aethionema arabicum HOM05D004025 ORTHO05D004929 9.0e-42 174.1 164 53.7
AUR62006840 Chenopodium quinoa HOM05D004025 ORTHO05D004929 9.0e-42 174.1 159 56.6
MBI06_g29665_MAGBIO Magnolia biondii HOM05D004025 ORTHO05D004929 9.0e-42 174.1 186 51.1
arahy.Tifrunner.gnm1.ann1.T69UQ6 Arachis hypogaea HOM05D004025 ORTHO05D004929 1.5e-41 173.3 158 54.4
CARHR204050 Cardamine hirsuta HOM05D004025 ORTHO05D004929 1.5e-41 173.3 164 53.0
Lsat_1_v5_gn_5_42641 Lactuca sativa HOM05D004025 ORTHO05D004929 2.6e-41 172.6 155 57.4
AT5G09350 Arabidopsis thaliana HOM05D004025 ORTHO05D004929 3.4e-41 172.2 141 58.2
AL6G19740 Arabidopsis lyrata HOM05D004025 ORTHO05D004929 4.5e-41 171.8 164 54.3
Hund21821 Selenicereus undatus HOM05D004025 ORTHO05D004929 4.5e-41 171.8 159 54.7
Medtr3g096110 Medicago truncatula HOM05D004025 ORTHO05D004929 7.6e-41 171.0 177 50.8
SHI11475 Sapria himalayana HOM05D004025 ORTHO05D004929 7.6e-41 171.0 179 52.0
Carub.0006s0789 Capsella rubella HOM05D004025 ORTHO05D004929 1.7e-40 169.9 164 51.2
AUR62000495 Chenopodium quinoa HOM05D004025 ORTHO05D004929 2.2e-40 169.5 145 57.2
CDE08G1435 Ceratophyllum demersum HOM05D004025 ORTHO05D004929 2.9e-40 169.1 159 57.9
Mapoly0091s0020 Marchantia polymorpha HOM05D004025 ORTHO05D004929 2.5e-39 166.0 157 51.0
TPR.G37364 Trifolium pratense HOM05D004025 ORTHO05D004929 1.2e-38 163.7 142 57.7
Pp3c5_11330 Physcomitrium patens HOM05D004025 ORTHO05D004929 1.6e-38 163.3 156 52.6
AagrBONN_evm.TU.Sc2ySwM_228.921 Anthoceros agrestis HOM05D004025 ORTHO05D004929 2.6e-33 146.0 158 48.7
Pp3c6_11330 Physcomitrium patens HOM05D004025 ORTHO05D004929 1.4e-31 140.2 156 49.4
CBR_g34503 Chara braunii HOM05D004025 ORTHO05D004929 2.7e-30 136.0 162 46.3
SEGI_16906 Sequoiadendron giganteum HOM05D004025 ORTHO05D004929 4.7e-30 135.2 179 45.3
SMO134G0131 Selaginella moellendorffii HOM05D004025 ORTHO05D004929 1.8e-26 123.2 179 40.2
SMO182G0011 Selaginella moellendorffii HOM05D004025 ORTHO05D004929 1.8e-26 123.2 179 40.2
ECA232G2812 Erigeron canadensis HOM05D004025 ORTHO05D004929 2.8e-11 72.8 92 48.9
Cre06.g304650 Chlamydomonas reinhardtii HOM05D004025 ORTHO05D004929 4.1e-10 68.9 129 31.8
TPR.G7026 Trifolium pratense HOM05D004025 ORTHO05D004929 3.8e-08 62.4 59 50.8


User provided reference genes

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