Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb087210 Zea mays HOM05D000240 ORTHO05D018786 1.2e-26 122.5 64 100.0
Zm00001eb386500 Zea mays HOM05D001780 ORTHO05D444108 1.4e-19 99.0 59 86.4
Zm00001eb220360 Zea mays HOM05D000240 ORTHO05D001153 1.8e-19 98.6 56 96.4
Zm00001eb043680 Zea mays HOM05D000240 ORTHO05D001153 5.4e-19 97.1 56 94.6
Os10g0512800 Oryza sativa ssp. japonica HOM05D000240 ORTHO05D001153 1.6e-18 95.5 63 85.7
TAR376G0052 Trochodendron aralioides HOM05D000240 ORTHO05D001153 5.8e-13 77.0 63 69.8
Eucgr.I01311 Eucalyptus grandis HOM05D000240 ORTHO05D001153 1.1e-11 72.8 63 65.1
Nn5g29194 Nelumbo nucifera HOM05D000240 ORTHO05D001153 1.4e-11 72.4 63 65.1
Nn6g32210 Nelumbo nucifera HOM05D000240 ORTHO05D001153 1.9e-11 72.0 63 66.7
TAR628G1129 Trochodendron aralioides HOM05D000240 ORTHO05D001153 1.9e-11 72.0 63 65.1
Lj3g0019992 Lotus japonicus HOM05D000240 ORTHO05D001153 7.0e-11 70.1 62 59.7
Glyma.11G112700 Glycine max HOM05D000240 ORTHO05D001153 1.2e-10 69.3 55 69.1
Lalb_Chr01g0002261 Lupinus albus HOM05D000240 ORTHO05D001153 2.0e-10 68.6 55 65.5
QL11p045641 Quercus lobata HOM05D000240 ORTHO05D001153 2.0e-10 68.6 63 61.9
Glyma.12G038600 Glycine max HOM05D000240 ORTHO05D001153 3.5e-10 67.8 56 71.4
Manes.04G085200 Manihot esculenta HOM05D000240 ORTHO05D001153 6.0e-10 67.0 63 58.7
TPR.G16212 Trifolium pratense HOM05D000240 ORTHO05D001153 6.0e-10 67.0 62 59.7
CiPaw.06G130700 Carya illinoinensis HOM05D000240 ORTHO05D001153 7.8e-10 66.6 63 58.7
Ca_20920_v3 Cicer arietinum L. HOM05D000240 ORTHO05D001153 7.8e-10 66.6 62 58.1
ATR0661G585 Amborella trichopoda HOM05D000240 ORTHO05D001153 1.0e-09 66.2 51 72.5
Gohir.A01G003700 Gossypium hirsutum HOM05D000240 ORTHO05D001153 1.0e-09 66.2 64 60.9
Gohir.D01G003701 Gossypium hirsutum HOM05D000240 ORTHO05D001153 1.0e-09 66.2 64 60.9
Gorai.002G004600 Gossypium raimondii HOM05D000240 ORTHO05D001153 1.0e-09 66.2 64 60.9
Lalb_Chr03g0025401 Lupinus albus HOM05D000240 ORTHO05D001153 1.0e-09 66.2 56 64.3
Psat7g182360 Pisum sativum HOM05D000240 ORTHO05D001153 1.0e-09 66.2 62 58.1
arahy.Tifrunner.gnm1.ann1.538NCA Arachis hypogaea HOM05D000240 ORTHO05D001153 1.3e-09 65.9 62 61.3
arahy.Tifrunner.gnm1.ann1.DN52HN Arachis hypogaea HOM05D000240 ORTHO05D001153 1.3e-09 65.9 63 55.6
arahy.Tifrunner.gnm1.ann1.P086Q7 Arachis hypogaea HOM05D000240 ORTHO05D001153 1.3e-09 65.9 62 61.3
arahy.Tifrunner.gnm1.ann1.VG9BQH Arachis hypogaea HOM05D000240 ORTHO05D001153 1.3e-09 65.9 63 55.6
Hund06267 Selenicereus undatus HOM05D000240 ORTHO05D001153 1.3e-09 65.9 63 58.7
Atru.chr5.3112 Acer truncatum HOM05D000240 ORTHO05D001153 1.7e-09 65.5 63 58.7
CANSAT11G1038 Cannabis sativa HOM05D000240 ORTHO05D001153 1.7e-09 65.5 63 57.1
DCAR_003649 Daucus carota HOM05D000240 ORTHO05D001153 1.7e-09 65.5 60 61.7
CDE08G0769 Ceratophyllum demersum HOM05D000240 ORTHO05D001153 2.3e-09 65.1 62 56.5
Migut.B00190 Erythranthe guttata HOM05D000240 ORTHO05D001153 2.3e-09 65.1 46 76.1
Gohir.A04G123800 Gossypium hirsutum HOM05D000240 ORTHO05D001153 2.3e-09 65.1 63 57.1
Lj9C381G11 Lonicera japonica HOM05D000240 ORTHO05D001153 2.3e-09 65.1 60 60.0
Ca_15343_v3 Cicer arietinum L. HOM05D000240 ORTHO05D001153 3.0e-09 64.7 62 59.7
Dinv42014 Davidia involucrata HOM05D000240 ORTHO05D001153 3.0e-09 64.7 63 55.6
Aqoxy6G02405 Aquilegia oxysepala HOM05D000240 ORTHO05D001153 3.9e-09 64.3 56 64.3
Glyma.04G009100 Glycine max HOM05D000240 ORTHO05D001153 3.9e-09 64.3 62 58.1
Lj1g0006393 Lotus japonicus HOM05D000240 ORTHO05D001153 3.9e-09 64.3 62 59.7
Sed0005078 Sechium edule HOM05D000240 ORTHO05D001153 3.9e-09 64.3 54 70.4
Sed0023290 Sechium edule HOM05D000240 ORTHO05D001153 3.9e-09 64.3 57 66.7
THA.LOC104804119 Tarenaya hassleriana HOM05D000240 ORTHO05D001153 3.9e-09 64.3 56 62.5
Medtr4g071210 Medicago truncatula HOM05D000240 ORTHO05D001153 5.0e-09 63.9 62 56.5
Potri.009G122100 Populus trichocarpa HOM05D000240 ORTHO05D001153 5.0e-09 63.9 63 55.6
Sc18g0005290 Simmondsia chinensis HOM05D000240 ORTHO05D001153 5.0e-09 63.9 63 58.7
Glyma.06G009000 Glycine max HOM05D000240 ORTHO05D001153 6.6e-09 63.5 62 56.5
Cpa.g.sc150.41 Carica papaya HOM05D000240 ORTHO05D001153 8.6e-09 63.2 56 60.7
Duzib052G0374 Durio zibethinus HOM05D000240 ORTHO05D001153 8.6e-09 63.2 63 55.6
Phvul.009G004100 Phaseolus vulgaris HOM05D000240 ORTHO05D001153 8.6e-09 63.2 62 56.5
TPR.G32177 Trifolium pratense HOM05D000240 ORTHO05D001153 8.6e-09 63.2 62 56.5
Aa31LG6G16200 Aethionema arabicum HOM05D000240 ORTHO05D001153 1.1e-08 62.8 63 57.1
MD10G1065900 Malus domestica HOM05D000240 ORTHO05D001153 1.1e-08 62.8 63 55.6
Oeu052524.1 Olea europaea HOM05D000240 ORTHO05D018786 1.1e-08 62.8 51 68.6
Oeu052525.1 Olea europaea HOM05D000240 ORTHO05D001153 1.1e-08 62.8 51 68.6
PSO541G4974 Papaver somniferum HOM05D000240 ORTHO05D001153 1.1e-08 62.8 51 66.7
PSO675G1230 Papaver somniferum HOM05D000240 ORTHO05D001153 1.1e-08 62.8 51 66.7
Phvul.011G040700 Phaseolus vulgaris HOM05D000240 ORTHO05D001153 1.1e-08 62.8 44 77.3
VMungo1127G2069 Vigna mungo HOM05D000240 ORTHO05D001153 1.1e-08 62.8 44 77.3
Cfa005076 Carpinus fangiana HOM05D000240 ORTHO05D001153 1.5e-08 62.4 63 55.6
Prupe.8G087800 Prunus persica HOM05D000240 ORTHO05D001153 1.5e-08 62.4 63 55.6
A08p23880 Brassica napus HOM05D000240 ORTHO05D001153 1.9e-08 62.0 63 55.6
ECA240G2203 Erigeron canadensis HOM05D000240 ORTHO05D001153 1.9e-08 62.0 46 71.7
FAN27G1574 Fragaria x ananassa HOM05D000240 ORTHO05D001153 1.9e-08 62.0 52 65.4
Gohir.D04G165900 Gossypium hirsutum HOM05D000240 ORTHO05D001153 1.9e-08 62.0 63 55.6
Gorai.012G154300 Gossypium raimondii HOM05D000240 ORTHO05D001153 1.9e-08 62.0 63 55.6
PGR142G1203 Punica granatum HOM05D000240 ORTHO05D001153 1.9e-08 62.0 63 54.0
ClCG11G004000 Citrullus lanatus HOM05D000240 ORTHO05D001153 2.5e-08 61.6 63 58.7
Gohir.A13G031200 Gossypium hirsutum HOM05D000240 ORTHO05D001153 2.5e-08 61.6 62 56.5
Carub.0004s0041 Capsella rubella HOM05D000240 ORTHO05D001153 3.3e-08 61.2 46 71.7
Thhalv10024289m.g Eutrema salsugineum HOM05D000240 ORTHO05D001153 3.3e-08 61.2 60 56.7
Lsat_1_v5_gn_7_92061 Lactuca sativa HOM05D000240 ORTHO05D001153 3.3e-08 61.2 68 54.4
Medtr3g117330 Medicago truncatula HOM05D000240 ORTHO05D001153 3.3e-08 61.2 62 54.8
Peaxi162Scf00684g00222 Petunia axillaris HOM05D000240 ORTHO05D001153 3.3e-08 61.2 51 64.7
THA.LOC104824800 Tarenaya hassleriana HOM05D000240 ORTHO05D001153 3.3e-08 61.2 63 55.6
Actinidia02240 Actinidia chinensis HOM05D000240 ORTHO05D001153 4.3e-08 60.8 64 56.2
AL4G10550 Arabidopsis lyrata HOM05D000240 ORTHO05D001153 4.3e-08 60.8 59 62.7
BolC7t46748H Brassica oleracea HOM05D000240 ORTHO05D001153 4.3e-08 60.8 60 58.3
CSS0018000 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D001153 4.3e-08 60.8 63 54.0
CiPaw.05G071900 Carya illinoinensis HOM05D000240 ORTHO05D001153 4.3e-08 60.8 63 57.1
COL.COLO4_26016 Corchorus olitorius HOM05D000240 ORTHO05D001153 4.3e-08 60.8 51 66.7
Haze_02306 Corylus avellana HOM05D000240 ORTHO05D001153 4.3e-08 60.8 63 54.0
THA.LOC104807759 Tarenaya hassleriana HOM05D000240 ORTHO05D001153 4.3e-08 60.8 63 55.6
unitig_699.g19884 Utricularia gibba HOM05D000240 ORTHO05D001153 4.3e-08 60.8 61 54.1
AT2G21380 Arabidopsis thaliana HOM05D000240 ORTHO05D001153 5.6e-08 60.5 59 62.7
BcaB03g12238 Brassica carinata HOM05D000240 ORTHO05D001153 5.6e-08 60.5 59 55.9
Carub.0007s0092 Capsella rubella HOM05D000240 ORTHO05D001153 5.6e-08 60.5 63 54.0
FAN15G0690 Fragaria x ananassa HOM05D000240 ORTHO05D001153 5.6e-08 60.5 63 54.0
CARHR112260 Cardamine hirsuta HOM05D000240 ORTHO05D001153 7.3e-08 60.1 59 62.7
TWI75G0793 Tripterygium wilfordii HOM05D000240 ORTHO05D001153 7.3e-08 60.1 51 64.7
TWI79G0940 Tripterygium wilfordii HOM05D000240 ORTHO05D001153 7.3e-08 60.1 51 64.7
AL7G10990 Arabidopsis lyrata HOM05D000240 ORTHO05D001153 9.5e-08 59.7 56 62.5
AT4G39050 Arabidopsis thaliana HOM05D000240 ORTHO05D001153 9.5e-08 59.7 56 62.5
C07p63370 Brassica napus HOM05D000240 ORTHO05D001153 9.5e-08 59.7 60 56.7
BraA06t27737Z Brassica rapa HOM05D000240 ORTHO05D001153 9.5e-08 59.7 60 56.7
BraA08t34340Z Brassica rapa HOM05D000240 ORTHO05D001153 9.5e-08 59.7 63 54.0
CARHR247700 Cardamine hirsuta HOM05D000240 ORTHO05D001153 9.5e-08 59.7 63 54.0
MELO3C023342.2 Cucumis melo HOM05D000240 ORTHO05D001153 9.5e-08 59.7 51 64.7
Nitab4.5_0011132g0010 Nicotiana tabacum HOM05D000240 ORTHO05D001153 9.5e-08 59.7 52 63.5
unitig_8.g3247 Utricularia gibba HOM05D000240 ORTHO05D001153 9.5e-08 59.7 63 54.0
FAN20G1397 Fragaria x ananassa HOM05D000240 ORTHO05D001153 1.2e-07 59.3 51 64.7
Nitab4.5_0000589g0030 Nicotiana tabacum HOM05D000240 ORTHO05D001153 1.2e-07 59.3 44 70.5
Nitab4.5_0003006g0010 Nicotiana tabacum HOM05D000240 ORTHO05D001153 1.2e-07 59.3 44 70.5
RcHm_v2.0_Chr6g0267011 Rosa chinensis HOM05D000240 ORTHO05D001153 1.2e-07 59.3 51 64.7
Sabra09G0094300 Salix brachista HOM05D000240 ORTHO05D001153 1.2e-07 59.3 62 54.8
BcaNung01285 Brassica carinata HOM05D000240 ORTHO05D001153 2.1e-07 58.5 60 55.0
BolC8t51721H Brassica oleracea HOM05D000240 ORTHO05D001153 2.1e-07 58.5 53 60.4
Sp7g36780 Schrenkiella parvula HOM05D000240 ORTHO05D001153 2.1e-07 58.5 60 55.0
Sed0002918 Sechium edule HOM05D000240 ORTHO05D001153 2.1e-07 58.5 51 62.7
A06p48710 Brassica napus HOM05D000240 ORTHO05D001153 2.8e-07 58.2 51 62.7
C08p41590 Brassica napus HOM05D000240 ORTHO05D001153 2.8e-07 58.2 51 64.7
CsaV3_2G015170 Cucumis sativus L. HOM05D000240 ORTHO05D001153 2.8e-07 58.2 51 62.7
VMungo1309G1100 Vigna mungo HOM05D000240 ORTHO05D001153 2.8e-07 58.2 62 53.2
CSS0029478 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D001153 3.6e-07 57.8 62 56.5
Thecc.02G077900 Theobroma cacao HOM05D000240 ORTHO05D001153 3.6e-07 57.8 63 52.4
CAN.G1.58 Capsicum annuum HOM05D000240 ORTHO05D001153 4.7e-07 57.4 44 68.2
FAN24G1691 Fragaria x ananassa HOM05D000240 ORTHO05D001153 4.7e-07 57.4 44 70.5
Lsat_1_v5_gn_4_182561 Lactuca sativa HOM05D000240 ORTHO05D018786 4.7e-07 57.4 44 68.2
Nitab4.5_0002723g0070 Nicotiana tabacum HOM05D000240 ORTHO05D001153 4.7e-07 57.4 59 52.5
AUR62010414 Chenopodium quinoa HOM05D000240 ORTHO05D001153 6.2e-07 57.0 51 62.7
AUR62016802 Chenopodium quinoa HOM05D000240 ORTHO05D001153 6.2e-07 57.0 51 62.7
FvH4_2g10080 Fragaria vesca HOM05D000240 ORTHO05D001153 6.2e-07 57.0 51 62.7
HanXRQChr16g0506381 Helianthus annuus HOM05D000240 ORTHO05D001153 8.1e-07 56.6 56 58.9
Lj5C191G7 Lonicera japonica HOM05D000240 ORTHO05D001153 8.1e-07 56.6 53 60.4
MBI05_g10541_MAGBIO Magnolia biondii HOM05D000240 ORTHO05D001153 8.1e-07 56.6 63 52.4
Sp4g00550 Schrenkiella parvula HOM05D000240 ORTHO05D001153 8.1e-07 56.6 53 58.5
HanXRQChr04g0127671 Helianthus annuus HOM05D000240 ORTHO05D001153 1.1e-06 56.2 62 53.2
MELO3C013429.2 Cucumis melo HOM05D000240 ORTHO05D001153 1.4e-06 55.8 61 57.4
Sabra04G0107800 Salix brachista HOM05D000240 ORTHO05D001153 1.4e-06 55.8 63 52.4
Manes.11G088000 Manihot esculenta HOM05D000240 ORTHO05D001153 1.8e-06 55.5 63 50.8
TAR381G1096 Trochodendron aralioides HOM05D000240 ORTHO05D001153 2.3e-06 55.1 63 54.0
unitig_0.g525 Utricularia gibba HOM05D000240 ORTHO05D001153 4.0e-06 54.3 61 55.7
Hma1.2p1_0066F.1_g035890 Hydrangea macrophylla HOM05D000240 ORTHO05D001153 5.2e-06 53.9 62 53.2
Sc08g0000780 Simmondsia chinensis HOM05D000240 ORTHO05D001153 6.8e-06 53.5 51 60.8
MD05G1058100 Malus domestica HOM05D000240 ORTHO05D001153 8.9e-06 53.1 63 49.2


User provided reference genes

Program Settings