Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb087060 Zea mays HOM05D004757 ORTHO05D005743 3.1e-85 318.9 226 100.0
Zm00001eb420280 Zea mays HOM05D004757 ORTHO05D005743 3.2e-42 176.0 213 53.1
Zm00001eb236700 Zea mays HOM05D004757 ORTHO05D005743 1.7e-22 110.5 204 38.7
Os02g0461900 Oryza sativa ssp. japonica HOM05D004757 ORTHO05D005743 1.0e-19 101.3 224 35.3
Zm00001eb180540 Zea mays HOM05D004757 ORTHO05D005743 1.9e-18 97.1 211 37.9
CDE02G3269 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 9.4e-18 94.7 70 58.6
CDE04G2108 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 2.7e-17 93.2 70 57.1
Hma1.2p1_1303F.1_g274440 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 2.3e-16 90.1 81 53.1
Lsat_1_v5_gn_5_85101 Lactuca sativa HOM05D004757 ORTHO05D005743 6.8e-16 88.6 82 54.9
PSO063G6152 Papaver somniferum HOM05D004757 ORTHO05D005743 6.8e-16 88.6 206 32.5
Actinidia01305 Actinidia chinensis HOM05D004757 ORTHO05D005743 8.8e-16 88.2 82 51.2
Cfa013398 Carpinus fangiana HOM05D004757 ORTHO05D005743 8.8e-16 88.2 68 61.8
HPP92_015369 Vanilla planifolia HOM05D004757 ORTHO05D005743 8.8e-16 88.2 212 33.5
Oeu025694.3 Olea europaea HOM05D004757 ORTHO05D005743 1.5e-15 87.4 65 58.5
PSO170G5353 Papaver somniferum HOM05D004757 ORTHO05D005743 2.0e-15 87.0 206 32.5
HanXRQChr09g0244371 Helianthus annuus HOM05D004757 ORTHO05D005743 4.4e-15 85.9 61 62.3
Nn2g12725 Nelumbo nucifera HOM05D004757 ORTHO05D005743 4.4e-15 85.9 66 59.1
Lsat_1_v5_gn_7_54961 Lactuca sativa HOM05D004757 ORTHO05D005743 5.7e-15 85.5 61 62.3
unitig_21.g20652 Utricularia gibba HOM05D004757 ORTHO05D005743 9.8e-15 84.7 78 48.7
CiPaw.08G035200 Carya illinoinensis HOM05D004757 ORTHO05D005743 1.3e-14 84.3 65 61.5
TAR626G1857 Trochodendron aralioides HOM05D004757 ORTHO05D005743 1.3e-14 84.3 67 58.2
Haze_21940 Corylus avellana HOM05D004757 ORTHO05D005743 2.2e-14 83.6 66 60.6
ECA234G2687 Erigeron canadensis HOM05D004757 ORTHO05D005743 2.8e-14 83.2 64 57.8
THA.LOC104803943 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 2.8e-14 83.2 68 57.4
Atru.chr7.878 Acer truncatum HOM05D004757 ORTHO05D005743 3.7e-14 82.8 69 59.4
Aa31LG8G16000 Aethionema arabicum HOM05D004757 ORTHO05D005743 3.7e-14 82.8 69 56.5
BcaC04g22879 Brassica carinata HOM05D004757 ORTHO05D005743 3.7e-14 82.8 70 54.3
HanXRQChr09g0254201 Helianthus annuus HOM05D004757 ORTHO05D005743 3.7e-14 82.8 59 62.7
SalBow6G1691 Salvia bowleyana HOM05D004757 ORTHO05D005743 3.7e-14 82.8 62 59.7
BcaB07g31638 Brassica carinata HOM05D004757 ORTHO05D005743 4.8e-14 82.4 67 58.2
Actinidia19844 Actinidia chinensis HOM05D004757 ORTHO05D005743 6.3e-14 82.0 71 54.9
Ca_21237_v3 Cicer arietinum L. HOM05D004757 ORTHO05D005743 6.3e-14 82.0 61 60.7
HanXRQChr05g0142021 Helianthus annuus HOM05D004757 ORTHO05D005743 6.3e-14 82.0 74 50.0
A07p01750 Brassica napus HOM05D004757 ORTHO05D005743 8.3e-14 81.6 67 56.7
C07p03670 Brassica napus HOM05D004757 ORTHO05D005743 8.3e-14 81.6 67 56.7
BolC7t40764H Brassica oleracea HOM05D004757 ORTHO05D005743 8.3e-14 81.6 67 56.7
Duzib150G0244 Durio zibethinus HOM05D004757 ORTHO05D005743 8.3e-14 81.6 80 50.0
Carub.0003s3315 Capsella rubella HOM05D004757 ORTHO05D005743 1.1e-13 81.3 65 56.9
Nn8g40409 Nelumbo nucifera HOM05D004757 ORTHO05D005743 1.1e-13 81.3 74 54.1
Gohir.A08G083700 Gossypium hirsutum HOM05D004757 ORTHO05D005743 1.4e-13 80.9 78 50.0
MSTRG.19719 Avicennia marina HOM05D004757 ORTHO05D005743 1.8e-13 80.5 64 56.2
Rhsim01G0003200 Rhododendron simsii HOM05D004757 ORTHO05D005743 1.8e-13 80.5 58 63.8
RcHm_v2.0_Chr4g0401201 Rosa chinensis HOM05D004757 ORTHO05D005743 1.8e-13 80.5 76 51.3
Thecc.09G175100 Theobroma cacao HOM05D004757 ORTHO05D005743 2.4e-13 80.1 78 50.0
ClCG06G013460 Citrullus lanatus HOM05D004757 ORTHO05D005743 3.1e-13 79.7 71 54.9
Migut.J01503 Erythranthe guttata HOM05D004757 ORTHO05D005743 3.1e-13 79.7 65 53.8
Gohir.D08G093400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 3.1e-13 79.7 78 50.0
CiPaw.07G193700 Carya illinoinensis HOM05D004757 ORTHO05D005743 4.1e-13 79.3 68 58.8
Cc06_g12990 Coffea canephora HOM05D004757 ORTHO05D005743 4.1e-13 79.3 65 55.4
DCAR_020127 Daucus carota HOM05D004757 ORTHO05D005743 4.1e-13 79.3 73 52.1
Hma1.2p1_0935F.1_g238550 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 4.1e-13 79.3 70 51.4
Hma1.2p1_2317F.1_g319740 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 4.1e-13 79.3 70 51.4
Oeu025209.1 Olea europaea HOM05D004757 ORTHO05D005743 4.1e-13 79.3 65 55.4
Aqoxy7G02958 Aquilegia oxysepala HOM05D004757 ORTHO05D005743 5.4e-13 79.0 65 56.9
AT2G18910 Arabidopsis thaliana HOM05D004757 ORTHO05D005743 5.4e-13 79.0 71 54.9
BcaB03g16684 Brassica carinata HOM05D004757 ORTHO05D005743 5.4e-13 79.0 66 56.1
A09p12120 Brassica napus HOM05D004757 ORTHO05D005743 5.4e-13 79.0 62 59.7
ATR0030G045 Amborella trichopoda HOM05D004757 ORTHO05D005743 7.0e-13 78.6 85 43.5
AL3G53010 Arabidopsis lyrata HOM05D004757 ORTHO05D005743 7.0e-13 78.6 71 54.9
CARHR109470 Cardamine hirsuta HOM05D004757 ORTHO05D005743 7.0e-13 78.6 71 54.9
FvH4_4g07900 Fragaria vesca HOM05D004757 ORTHO05D005743 7.0e-13 78.6 76 50.0
FAN17G1906 Fragaria x ananassa HOM05D004757 ORTHO05D005743 7.0e-13 78.6 76 50.0
Gorai.004G099000 Gossypium raimondii HOM05D004757 ORTHO05D005743 7.0e-13 78.6 60 61.7
TAR636G1688 Trochodendron aralioides HOM05D004757 ORTHO05D005743 7.0e-13 78.6 64 56.2
MELO3C017451.2 Cucumis melo HOM05D004757 ORTHO05D005743 9.1e-13 78.2 69 55.1
MD16G1255800 Malus domestica HOM05D004757 ORTHO05D005743 9.1e-13 78.2 58 58.6
Peaxi162Scf00200g00183 Petunia axillaris HOM05D004757 ORTHO05D005743 9.1e-13 78.2 61 55.7
BolC3t18202H Brassica oleracea HOM05D004757 ORTHO05D005743 1.2e-12 77.8 66 53.0
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 1.2e-12 77.8 64 56.2
Cpa.g.sc95.44 Carica papaya HOM05D004757 ORTHO05D005743 1.2e-12 77.8 52 65.4
Thhalv10022848m.g Eutrema salsugineum HOM05D004757 ORTHO05D005743 1.2e-12 77.8 64 57.8
Potri.006G166400 Populus trichocarpa HOM05D004757 ORTHO05D005743 1.2e-12 77.8 85 47.1
CsaV3_1G031720 Cucumis sativus L. HOM05D004757 ORTHO05D005743 1.6e-12 77.4 71 53.5
Lsat_1_v5_gn_8_68041 Lactuca sativa HOM05D004757 ORTHO05D005743 1.6e-12 77.4 61 52.5
BcaC06g36489 Brassica carinata HOM05D004757 ORTHO05D005743 2.0e-12 77.0 59 59.3
Dinv19553 Davidia involucrata HOM05D004757 ORTHO05D005743 2.0e-12 77.0 54 59.3
Duzib170G0153 Durio zibethinus HOM05D004757 ORTHO05D005743 2.0e-12 77.0 62 59.7
Eucgr.C00145 Eucalyptus grandis HOM05D004757 ORTHO05D005743 2.0e-12 77.0 58 62.1
Glyma.17G062100 Glycine max HOM05D004757 ORTHO05D005743 2.0e-12 77.0 68 55.9
Lj4g0011233 Lotus japonicus HOM05D004757 ORTHO05D005743 2.0e-12 77.0 66 54.5
Medtr4g127810 Medicago truncatula HOM05D004757 ORTHO05D005743 2.0e-12 77.0 62 59.7
Prupe.1G082700 Prunus persica HOM05D004757 ORTHO05D005743 2.0e-12 77.0 65 55.4
Sed0015670 Sechium edule HOM05D004757 ORTHO05D005743 2.0e-12 77.0 83 50.6
CSS0015413 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 2.7e-12 76.6 51 60.8
Potri.018G090900 Populus trichocarpa HOM05D004757 ORTHO05D005743 2.7e-12 76.6 76 51.3
Sp3g32380 Schrenkiella parvula HOM05D004757 ORTHO05D005743 2.7e-12 76.6 64 56.2
TPR.G5446 Trifolium pratense HOM05D004757 ORTHO05D005743 2.7e-12 76.6 58 60.3
ATR0580G064 Amborella trichopoda HOM05D004757 ORTHO05D005743 3.5e-12 76.3 69 50.7
BolC9t54334H Brassica oleracea HOM05D004757 ORTHO05D005743 3.5e-12 76.3 77 51.9
CANSAT11G1025 Cannabis sativa HOM05D004757 ORTHO05D005743 3.5e-12 76.3 67 52.2
Manes.14G157383 Manihot esculenta HOM05D004757 ORTHO05D005743 3.5e-12 76.3 64 60.9
ECA236G5014 Erigeron canadensis HOM05D004757 ORTHO05D005743 4.5e-12 75.9 82 41.5
ECA240G0762 Erigeron canadensis HOM05D004757 ORTHO05D005743 4.5e-12 75.9 75 46.7
MD13G1249500 Malus domestica HOM05D004757 ORTHO05D005743 4.5e-12 75.9 58 56.9
Solyc07g006960.3 Solanum lycopersicum HOM05D004757 ORTHO05D005743 4.5e-12 75.9 58 58.6
Sopen07g003050 Solanum pennellii HOM05D004757 ORTHO05D005743 4.5e-12 75.9 58 58.6
TAR383G0800 Trochodendron aralioides HOM05D004757 ORTHO05D005743 4.5e-12 75.9 74 50.0
C03p59380 Brassica napus HOM05D004757 ORTHO05D005743 5.9e-12 75.5 66 51.5
Duzib168G0914 Durio zibethinus HOM05D004757 ORTHO05D005743 5.9e-12 75.5 64 57.8
HanXRQChr10g0308501 Helianthus annuus HOM05D004757 ORTHO05D005743 5.9e-12 75.5 59 52.5
Lalb_Chr12g0199461 Lupinus albus HOM05D004757 ORTHO05D005743 5.9e-12 75.5 56 60.7
PGSC0003DMG400018757 Solanum tuberosum HOM05D004757 ORTHO05D005743 5.9e-12 75.5 58 58.6
Gohir.A08G019400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 7.7e-12 75.1 52 63.5
Gorai.004G027500 Gossypium raimondii HOM05D004757 ORTHO05D005743 7.7e-12 75.1 52 63.5
Manes.06G022800 Manihot esculenta HOM05D004757 ORTHO05D005743 7.7e-12 75.1 64 60.9
Phvul.003G144000 Phaseolus vulgaris HOM05D004757 ORTHO05D005743 7.7e-12 75.1 73 47.9
A06p33080 Brassica napus HOM05D004757 ORTHO05D005743 1.3e-11 74.3 65 52.3
Psat4g012760 Pisum sativum HOM05D004757 ORTHO05D005743 1.3e-11 74.3 60 56.7
PGR044G0017 Punica granatum HOM05D004757 ORTHO05D005743 1.3e-11 74.3 61 57.4
QL02p098330 Quercus lobata HOM05D004757 ORTHO05D005743 1.3e-11 74.3 65 55.4
BraA09t36856Z Brassica rapa HOM05D004757 ORTHO05D005743 1.7e-11 73.9 62 58.1
AUR62043442 Chenopodium quinoa HOM05D000216 ORTHO05D003518 1.7e-11 73.9 71 43.7
Nitab4.5_0010128g0010 Nicotiana tabacum HOM05D004757 ORTHO05D005743 1.7e-11 73.9 61 54.1
Peaxi162Scf00200g01819 Petunia axillaris HOM05D004757 ORTHO05D005743 1.7e-11 73.9 69 47.8
Migut.K00229 Erythranthe guttata HOM05D004757 ORTHO05D005743 2.2e-11 73.6 61 55.7
Glyma.13G097500 Glycine max HOM05D004757 ORTHO05D005743 2.2e-11 73.6 51 62.7
MSTRG.6239 Avicennia marina HOM05D004757 ORTHO05D005743 3.8e-11 72.8 44 63.6
C09p14310 Brassica napus HOM05D004757 ORTHO05D005743 3.8e-11 72.8 72 52.8
Gohir.D08G030000 Gossypium hirsutum HOM05D004757 ORTHO05D005743 3.8e-11 72.8 52 61.5
Lalb_Chr13g0300141 Lupinus albus HOM05D004757 ORTHO05D005743 3.8e-11 72.8 74 48.6
VMungo1215G0044 Vigna mungo HOM05D004757 ORTHO05D005743 3.8e-11 72.8 50 64.0
Ah.14g083740 Amaranthus hybridus HOM05D004757 ORTHO05D005743 5.0e-11 72.4 66 50.0
Ciclev10009829m.g Citrus clementina HOM05D004757 ORTHO05D005743 5.0e-11 72.4 58 58.6
Peaxi162Scf01558g00012 Petunia axillaris HOM05D004757 ORTHO05D005743 6.5e-11 72.0 198 29.8
TWI34G1741 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 8.5e-11 71.6 68 52.9
PGR142G2781 Punica granatum HOM05D004757 ORTHO05D005743 1.9e-10 70.5 45 66.7
Sed0003925 Sechium edule HOM05D004757 ORTHO05D005743 1.9e-10 70.5 45 66.7
THA.LOC104803488 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 1.9e-10 70.5 71 49.3
GSVIVG01035530001 Vitis vinifera HOM05D004757 ORTHO05D005743 1.9e-10 70.5 46 63.0
BraA06t26238Z Brassica rapa HOM05D004757 ORTHO05D005743 2.5e-10 70.1 70 51.4
TWI63G0987 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 4.2e-10 69.3 82 53.7
Sc08g0005260 Simmondsia chinensis HOM05D004757 ORTHO05D005743 5.5e-10 68.9 82 43.9
SGA_v2.0_scaffold66G22433 Striga asiatica HOM05D004757 ORTHO05D005743 5.5e-10 68.9 65 50.8
EL10Ac8g18296 Beta vulgaris HOM05D004757 ORTHO05D005743 7.2e-10 68.6 78 43.6
MBI16_g31788_MAGBIO Magnolia biondii HOM05D004757 ORTHO05D005743 1.2e-09 67.8 92 41.3
CSS0012735 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 2.1e-09 67.0 200 30.0
Eucgr.L02640 Eucalyptus grandis HOM05D004757 ORTHO05D005743 2.1e-09 67.0 65 47.7
Sc14g0001290 Simmondsia chinensis HOM05D004757 ORTHO05D005743 4.7e-09 65.9 64 50.0
CAN.G1464.4 Capsicum annuum HOM05D004757 ORTHO05D005743 6.1e-09 65.5 58 50.0
FAN12G2780 Fragaria x ananassa HOM05D004757 ORTHO05D005743 6.1e-09 65.5 99 38.4
FAN07G0988 Fragaria x ananassa HOM05D004757 ORTHO05D005743 2.3e-08 63.5 99 37.4
FAN22G2108 Fragaria x ananassa HOM05D004757 ORTHO05D005743 2.3e-08 63.5 99 37.4
Hund09034 Selenicereus undatus HOM05D004757 ORTHO05D005743 6.8e-08 62.0 66 45.5
Peaxi162Scf00200g00182 Petunia axillaris HOM05D004757 ORTHO05D005743 2.0e-07 60.5 50 54.0
Sabra06G0128000 Salix brachista HOM05D004757 ORTHO05D005743 4.4e-07 59.3 80 41.2
Sabra18G0078100 Salix brachista HOM05D004757 ORTHO05D005743 5.7e-07 58.9 72 43.1
Os04g0283900 Oryza sativa ssp. japonica HOM05D004757 ORTHO05D297249 6.3e-06 55.5 53 58.5


User provided reference genes

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