Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb086670 Zea mays HOM05D007295 ORTHO05D007705 7.0e-133 477.2 233 100.0
Zm00001eb010720 Zea mays HOM05D007295 ORTHO05D007705 2.0e-132 475.7 233 99.6
Zm00001eb367280 Zea mays HOM05D007295 ORTHO05D007705 1.1e-130 469.9 233 98.7
Zm00001eb401020 Zea mays HOM05D007295 ORTHO05D007705 1.1e-130 469.9 233 98.7
Zm00001eb024970 Zea mays HOM05D007295 ORTHO05D007705 2.1e-129 465.7 228 99.6
Zm00001eb237400 Zea mays HOM05D007295 ORTHO05D007705 2.7e-129 465.3 233 97.4
Zm00001eb063180 Zea mays HOM05D007295 ORTHO05D007705 8.0e-129 463.8 233 98.3
Zm00001eb171470 Zea mays HOM05D007295 ORTHO05D007705 2.3e-128 462.2 233 97.9
Zm00001eb273910 Zea mays HOM05D007295 ORTHO05D007705 6.6e-107 391.0 191 99.5
Zm00001eb048300 Zea mays HOM05D007295 ORTHO05D007705 2.0e-79 299.7 150 97.3
Zm00001eb133080 Zea mays HOM05D007295 ORTHO05D007705 2.4e-69 266.2 130 100.0
Zm00001eb331910 Zea mays HOM05D007295 ORTHO05D007705 7.1e-61 238.0 115 99.1
Zm00001eb117650 Zea mays HOM05D007295 ORTHO05D007705 1.0e-59 234.2 114 100.0
Zm00001eb392180 Zea mays HOM05D007295 ORTHO05D007705 1.5e-58 230.3 112 98.2
Zm00001eb236790 Zea mays HOM05D007295 ORTHO05D007705 3.3e-58 229.2 115 96.5
Os02g0813200 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 1.9e-50 203.4 233 47.2
Zm00001eb345330 Zea mays HOM05D007295 ORTHO05D007705 3.3e-50 202.6 97 99.0
Zm00001eb018820 Zea mays HOM05D007295 ORTHO05D007705 9.6e-50 201.1 233 49.4
Zm00001eb279200 Zea mays HOM05D007295 ORTHO05D007705 9.6e-50 201.1 97 97.9
Os06g0595700 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 3.1e-48 196.1 230 46.1
Zm00001eb090610 Zea mays HOM05D007295 ORTHO05D007705 7.6e-47 191.4 210 49.0
Zm00001eb019020 Zea mays HOM05D007295 ORTHO05D007705 2.9e-46 189.5 205 50.7
Zm00001eb391510 Zea mays HOM05D007295 ORTHO05D007705 2.5e-45 186.4 97 93.8
Zm00001eb015410 Zea mays HOM05D007295 ORTHO05D007705 7.1e-45 184.9 191 49.7
Zm00001eb197800 Zea mays HOM05D007295 ORTHO05D007705 7.1e-45 184.9 234 43.2
Os11g0427500 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 2.7e-44 183.0 154 61.7
Zm00001eb211670 Zea mays HOM05D007295 ORTHO05D007705 6.0e-44 181.8 234 42.3
Os05g0218001 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 1.0e-43 181.0 221 45.7
Zm00001eb087940 Zea mays HOM05D007295 ORTHO05D007705 1.0e-43 181.0 167 50.9
Zm00001eb113300 Zea mays HOM05D007295 ORTHO05D007705 1.8e-43 180.3 192 49.0
Zm00001eb046270 Zea mays HOM05D007295 ORTHO05D007705 3.0e-43 179.5 167 50.3
Zm00001eb389250 Zea mays HOM05D007295 ORTHO05D007705 3.0e-43 179.5 167 50.3
Zm00001eb242210 Zea mays HOM05D007295 ORTHO05D007705 5.1e-43 178.7 167 50.3
Os12g0299650 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 3.7e-41 172.6 186 48.9
Zm00001eb283050 Zea mays HOM05D007295 ORTHO05D007705 3.7e-41 172.6 85 96.5
Os06g0481800 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 8.2e-41 171.4 186 48.4
Os01g0894050 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 2.4e-40 169.9 186 48.4
Zm00001eb279690 Zea mays HOM05D007295 ORTHO05D007705 2.0e-39 166.8 186 45.7
Zm00001eb379810 Zea mays HOM05D007295 ORTHO05D007705 7.6e-39 164.9 89 89.9
Zm00001eb004080 Zea mays HOM05D007295 ORTHO05D007705 5.0e-38 162.2 133 53.4
Zm00001eb384140 Zea mays HOM05D007295 ORTHO05D007705 3.6e-36 156.0 160 46.2
Zm00001eb300210 Zea mays HOM05D007295 ORTHO05D007705 8.7e-35 151.4 133 51.9
Os09g0292300 Oryza sativa ssp. japonica HOM05D000034 ORTHO05D007705 9.1e-32 141.4 140 50.0
Zm00001eb086590 Zea mays HOM05D007295 ORTHO05D007705 2.0e-31 140.2 149 45.6
Zm00001eb385640 Zea mays HOM05D007295 ORTHO05D007705 1.0e-30 137.9 174 42.5
Zm00001eb270430 Zea mays HOM05D007295 ORTHO05D007705 1.4e-29 134.0 149 47.0
Zm00001eb045190 Zea mays HOM05D007295 ORTHO05D007705 1.9e-29 133.7 179 43.0
Zm00001eb121750 Zea mays HOM05D007295 ORTHO05D007705 1.0e-27 127.9 177 38.4
Zm00001eb412060 Zea mays HOM05D007295 ORTHO05D007705 3.3e-26 122.9 123 54.5
Zm00001eb309640 Zea mays HOM05D007295 ORTHO05D007705 2.8e-25 119.8 62 88.7
Zm00001eb424390 Zea mays HOM05D007295 ORTHO05D007705 2.8e-25 119.8 191 37.2
Os04g0422950 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 4.1e-24 115.9 97 53.6
Zm00001eb090020 Zea mays HOM05D007295 ORTHO05D007705 2.0e-23 113.6 141 38.3
Zm00001eb180120 Zea mays HOM05D007295 ORTHO05D007705 2.0e-23 113.6 141 38.3
Zm00001eb345220 Zea mays HOM05D007295 ORTHO05D007705 3.4e-23 112.8 91 51.6
Zm00001eb035520 Zea mays HOM05D011105 ORTHO05D007705 5.9e-23 112.1 138 38.4
Os04g0463600 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 7.7e-23 111.7 151 37.1
Zm00001eb338830 Zea mays HOM05D007295 ORTHO05D007705 2.2e-22 110.2 128 43.0
Zm00001eb373830 Zea mays HOM05D007295 ORTHO05D007705 2.2e-22 110.2 141 39.7
Zm00001eb020010 Zea mays HOM05D007295 ORTHO05D007705 5.0e-22 109.0 134 38.8
Zm00001eb136070 Zea mays HOM05D007295 ORTHO05D007705 8.5e-22 108.2 85 51.8
Zm00001eb390930 Zea mays HOM05D007295 ORTHO05D003458 8.5e-22 108.2 57 91.2
Zm00001eb236750 Zea mays HOM05D007295 ORTHO05D007705 1.4e-21 107.5 127 42.5
Zm00001eb056170 Zea mays HOM05D007295 ORTHO05D007705 1.9e-21 107.1 192 35.9
Zm00001eb274350 Zea mays HOM05D007295 ORTHO05D007705 3.2e-21 106.3 127 41.7
Zm00001eb391340 Zea mays HOM05D007295 ORTHO05D007705 4.2e-21 105.9 192 35.9
Zm00001eb375080 Zea mays HOM05D007295 ORTHO05D007705 5.5e-21 105.5 127 41.7
Zm00001eb386100 Zea mays HOM05D007295 ORTHO05D007705 9.4e-21 104.8 151 35.8
Zm00001eb390800 Zea mays HOM05D007295 ORTHO05D007705 9.4e-21 104.8 206 35.0
Zm00001eb180320 Zea mays HOM05D007295 ORTHO05D007705 1.0e-19 101.3 121 44.6
Zm00001eb122800 Zea mays HOM05D007295 ORTHO05D007705 1.4e-19 100.9 125 38.4
Zm00001eb136260 Zea mays HOM05D007295 ORTHO05D007705 1.1e-18 97.8 145 35.9
Zm00001eb196690 Zea mays HOM05D007295 ORTHO05D007705 7.4e-18 95.1 135 34.8
Os05g0498800 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 1.3e-17 94.4 106 48.1
Zm00001eb166860 Zea mays HOM05D007295 ORTHO05D007705 3.7e-17 92.8 163 35.0
Zm00001eb093810 Zea mays HOM05D007295 ORTHO05D007705 1.8e-16 90.5 133 33.8
Zm00001eb380560 Zea mays HOM05D007295 ORTHO05D007705 2.4e-16 90.1 65 61.5
Zm00001eb001660 Zea mays HOM05D007295 ORTHO05D007705 7.0e-16 88.6 133 33.8
Os03g0643100 Oryza sativa ssp. japonica HOM05D000665 ORTHO05D007705 4.5e-15 85.9 136 34.6
Os07g0115800 Oryza sativa ssp. japonica HOM05D000665 ORTHO05D007705 4.5e-15 85.9 136 34.6
Os07g0210800 Oryza sativa ssp. japonica HOM05D000665 ORTHO05D007705 4.5e-15 85.9 136 34.6
Os09g0122200 Oryza sativa ssp. japonica HOM05D000665 ORTHO05D007705 4.5e-15 85.9 136 34.6
Os10g0468301 Oryza sativa ssp. japonica HOM05D000665 ORTHO05D007705 4.5e-15 85.9 136 34.6
Zm00001eb411270 Zea mays HOM05D007295 ORTHO05D007705 4.5e-15 85.9 111 43.2
Zm00001eb079960 Zea mays HOM05D007295 ORTHO05D007705 8.5e-14 81.6 108 42.6
Zm00001eb224540 Zea mays HOM05D007295 ORTHO05D007705 8.5e-14 81.6 108 42.6
ATR0776G040 Amborella trichopoda HOM05D000665 ORTHO05D000140 4.7e-12 75.9 185 25.4
ATR0081G006 Amborella trichopoda HOM05D000665 ORTHO05D000140 6.1e-12 75.5 139 28.8
ATR0585G101 Amborella trichopoda HOM05D000665 ORTHO05D000140 1.0e-11 74.7 133 27.1
CDE08G0696 Ceratophyllum demersum HOM05D000032 ORTHO05D007907 1.4e-11 74.3 140 28.6
FAN15G1296 Fragaria x ananassa HOM05D000665 ORTHO05D003147 2.0e-10 70.5 145 27.6
MBI02_g21882_MAGBIO Magnolia biondii HOM05D000665 ORTHO05D000140 3.3e-10 69.7 126 28.6
Zm00001eb332310 Zea mays HOM05D007295 ORTHO05D007705 7.5e-10 68.6 44 68.2
MBI19_g03252_MAGBIO Magnolia biondii HOM05D000665 ORTHO05D000140 1.7e-09 67.4 134 25.4
TAR383G0921 Trochodendron aralioides HOM05D000665 ORTHO05D000140 6.3e-09 65.5 156 27.6
Zm00001eb129150 Zea mays HOM05D007295 ORTHO05D007705 1.4e-08 64.3 84 42.9
Zm00001eb389300 Zea mays HOM05D007295 ORTHO05D007705 1.4e-08 64.3 87 44.8
MBI14_g08099_MAGBIO Magnolia biondii HOM05D004103 ORTHO05D005242 2.4e-08 63.5 118 27.1
CiPaw.15G145500 Carya illinoinensis HOM05D000665 ORTHO05D000140 3.1e-08 63.2 161 25.5
Lj7C473G5 Lonicera japonica HOM05D000665 ORTHO05D000140 3.1e-08 63.2 138 27.5
Zm00001eb312550 Zea mays HOM05D007295 ORTHO05D030361 4.1e-08 62.8 84 46.4
Gohir.D08G228100 Gossypium hirsutum HOM05D000665 ORTHO05D000140 5.3e-08 62.4 146 26.0
Prupe.1G367300 Prunus persica HOM05D000665 ORTHO05D003147 5.3e-08 62.4 226 27.0
Lsat_1_v5_gn_6_77601 Lactuca sativa HOM05D000665 ORTHO05D000140 7.0e-08 62.0 151 25.2
Eucgr.F03745 Eucalyptus grandis HOM05D000665 ORTHO05D000285 1.6e-07 60.8 171 28.1
QL11p049281 Quercus lobata HOM05D000665 ORTHO05D000140 1.6e-07 60.8 156 22.4
TAR381G0952 Trochodendron aralioides HOM05D000665 ORTHO05D003147 1.6e-07 60.8 106 29.2
Aqoxy1G03381 Aquilegia oxysepala HOM05D000665 ORTHO05D000140 2.0e-07 60.5 193 22.8
Duzib132G1144 Durio zibethinus HOM05D000665 ORTHO05D000140 2.0e-07 60.5 134 23.9
PSO541G5512 Papaver somniferum HOM05D000665 ORTHO05D000140 2.0e-07 60.5 134 24.6
Thecc.09G014200 Theobroma cacao HOM05D000665 ORTHO05D000140 2.0e-07 60.5 151 25.2
Zm00001eb077000 Zea mays HOM05D007295 ORTHO05D030361 2.0e-07 60.5 192 26.6
CSS0011103 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000140 2.7e-07 60.1 165 24.8
Gohir.A08G211300 Gossypium hirsutum HOM05D000665 ORTHO05D000140 2.7e-07 60.1 146 26.0
PSO543G0001 Papaver somniferum HOM05D000665 ORTHO05D000140 2.7e-07 60.1 161 21.7
PSO675G6027 Papaver somniferum HOM05D000665 ORTHO05D000140 2.7e-07 60.1 161 22.4
Atru.chr5.3284 Acer truncatum HOM05D000665 ORTHO05D000140 3.5e-07 59.7 147 22.4
ATR0776G057 Amborella trichopoda HOM05D000665 ORTHO05D000140 3.5e-07 59.7 184 23.4
Dinv33085 Davidia involucrata HOM05D000665 ORTHO05D000140 3.5e-07 59.7 177 23.2
Gohir.D01G157200 Gossypium hirsutum HOM05D000665 ORTHO05D000140 3.5e-07 59.7 137 23.4
Gorai.002G195300 Gossypium raimondii HOM05D000665 ORTHO05D000140 3.5e-07 59.7 137 23.4
Thecc.02G063400 Theobroma cacao HOM05D000665 ORTHO05D000140 3.5e-07 59.7 175 25.1
Aa31sc83G50 Aethionema arabicum HOM05D000665 ORTHO05D000140 4.5e-07 59.3 149 24.2
PSO423G0050 Papaver somniferum HOM05D000665 ORTHO05D000140 4.5e-07 59.3 147 23.8
TAR636G0533 Trochodendron aralioides HOM05D000665 ORTHO05D000140 4.5e-07 59.3 125 24.0
GSVIVG01024053001 Vitis vinifera HOM05D000665 ORTHO05D000140 4.5e-07 59.3 154 22.7
CiPaw.05G079800 Carya illinoinensis HOM05D000665 ORTHO05D000140 5.9e-07 58.9 169 22.5
Nn5g30764 Nelumbo nucifera HOM05D000665 ORTHO05D003147 5.9e-07 58.9 167 23.4
PSO063G3248 Papaver somniferum HOM05D000665 ORTHO05D000140 5.9e-07 58.9 135 24.4
arahy.Tifrunner.gnm1.ann1.04U1FA Arachis hypogaea HOM05D000665 ORTHO05D000140 7.7e-07 58.5 175 21.7
COL.COLO4_18963 Corchorus olitorius HOM05D000665 ORTHO05D000140 7.7e-07 58.5 147 25.2
Dinv04945 Davidia involucrata HOM05D000665 ORTHO05D000140 7.7e-07 58.5 134 23.1
PSO170G6729 Papaver somniferum HOM05D000665 ORTHO05D000140 7.7e-07 58.5 161 22.4
Gohir.D11G180700 Gossypium hirsutum HOM05D000665 ORTHO05D003147 1.0e-06 58.2 181 22.1
PSO063G6652 Papaver somniferum HOM05D000665 ORTHO05D000140 1.0e-06 58.2 135 23.7
PSO675G3667 Papaver somniferum HOM05D000665 ORTHO05D000140 1.0e-06 58.2 135 23.7
PSO675G9286 Papaver somniferum HOM05D000665 ORTHO05D000140 1.0e-06 58.2 164 24.4
CANSAT25G2307 Cannabis sativa HOM05D000665 ORTHO05D000140 1.3e-06 57.8 129 22.5
COL.COLO4_17303 Corchorus olitorius HOM05D000665 ORTHO05D000140 1.3e-06 57.8 129 23.3
Haze_02167 Corylus avellana HOM05D000665 ORTHO05D000140 1.3e-06 57.8 185 22.7
TAR633G2037 Trochodendron aralioides HOM05D000665 ORTHO05D003147 1.3e-06 57.8 152 24.3
BcaC02g08393 Brassica carinata HOM05D000665 ORTHO05D000140 1.7e-06 57.4 192 23.4
C04p54760 Brassica napus HOM05D000665 ORTHO05D000140 1.7e-06 57.4 192 23.4
BraA04t17527Z Brassica rapa HOM05D000665 ORTHO05D000140 1.7e-06 57.4 192 22.4
Cpa.g.sc148.33 Carica papaya HOM05D000665 ORTHO05D000140 1.7e-06 57.4 148 24.3
Ciclev10019662m.g Citrus clementina HOM05D000665 ORTHO05D000140 1.7e-06 57.4 138 23.9
Duzib187G0414 Durio zibethinus HOM05D000665 ORTHO05D000140 1.7e-06 57.4 151 24.5
HanXRQChr03g0084731 Helianthus annuus HOM05D000665 ORTHO05D000140 1.7e-06 57.4 154 26.0
Rhsim02G0216200 Rhododendron simsii HOM05D000665 ORTHO05D000140 1.7e-06 57.4 166 23.5
Actinidia25828 Actinidia chinensis HOM05D000665 ORTHO05D000140 2.2e-06 57.0 177 23.7
CiPaw.07G231300 Carya illinoinensis HOM05D000665 ORTHO05D000140 2.2e-06 57.0 164 23.8
Ciclev10028943m.g Citrus clementina HOM05D000665 ORTHO05D000140 2.2e-06 57.0 134 23.1
Duzib147G1337 Durio zibethinus HOM05D000665 ORTHO05D003147 2.2e-06 57.0 105 28.6
Gohir.A11G173600 Gossypium hirsutum HOM05D000665 ORTHO05D003147 2.2e-06 57.0 95 29.5
CARHR116760 Cardamine hirsuta HOM05D000665 ORTHO05D000140 2.9e-06 56.6 186 25.8
Gohir.A01G166000 Gossypium hirsutum HOM05D000665 ORTHO05D000140 2.9e-06 56.6 131 22.1
Gohir.A05G060500 Gossypium hirsutum HOM05D000665 ORTHO05D000140 2.9e-06 56.6 149 24.2
Oeu021910.1 Olea europaea HOM05D000665 ORTHO05D000140 2.9e-06 56.6 160 23.8
PSO675G0132 Papaver somniferum HOM05D000665 ORTHO05D000140 2.9e-06 56.6 161 21.7
Sp4g03950 Schrenkiella parvula HOM05D000665 ORTHO05D000140 2.9e-06 56.6 191 25.7
THA.LOC104825955 Tarenaya hassleriana HOM05D000665 ORTHO05D000140 2.9e-06 56.6 170 24.7
COL.COLO4_13504 Corchorus olitorius HOM05D000665 ORTHO05D000140 3.8e-06 56.2 115 20.9
ECA240G4363 Erigeron canadensis HOM05D000665 ORTHO05D000140 3.8e-06 56.2 151 24.5
Gorai.004G242300 Gossypium raimondii HOM05D000665 ORTHO05D000140 3.8e-06 56.2 152 24.3
PSO832G3578 Papaver somniferum HOM05D000665 ORTHO05D000140 3.8e-06 56.2 135 23.7
Aqoxy1G03359 Aquilegia oxysepala HOM05D000665 ORTHO05D000140 5.0e-06 55.8 173 22.5
Eucgr.H01077 Eucalyptus grandis HOM05D000665 ORTHO05D000140 5.0e-06 55.8 109 25.7
Lj3g0017321 Lotus japonicus HOM05D000665 ORTHO05D000140 5.0e-06 55.8 137 22.6
MBI18_g11288_MAGBIO Magnolia biondii HOM05D000665 ORTHO05D000140 5.0e-06 55.8 175 25.1
vmacro11267 Vaccinium macrocarpon HOM05D000665 ORTHO05D000140 5.0e-06 55.8 165 23.0
CSS0005458 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000140 6.5e-06 55.5 140 27.1
Gohir.A08G041433 Gossypium hirsutum HOM05D000665 ORTHO05D000140 6.5e-06 55.5 165 21.2
Manes.11G096000 Manihot esculenta HOM05D000665 ORTHO05D000140 6.5e-06 55.5 156 21.8
Potri.004G172900 Populus trichocarpa HOM05D000665 ORTHO05D000140 6.5e-06 55.5 186 22.0
Sed0002116 Sechium edule HOM05D000665 ORTHO05D000140 6.5e-06 55.5 142 25.4
BolC4t27021H Brassica oleracea HOM05D000665 ORTHO05D000140 8.5e-06 55.1 204 23.5
CSS0030989 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000140 8.5e-06 55.1 144 24.3
FAN23G0726 Fragaria x ananassa HOM05D000876 ORTHO05D000285 8.5e-06 55.1 133 29.3
Lj7C736T17 Lonicera japonica HOM05D000665 ORTHO05D000140 8.5e-06 55.1 146 24.0
Rhsim02G0174000 Rhododendron simsii HOM05D021294 ORTHO05D000921 8.5e-06 55.1 137 24.8
GSVIVG01035986001 Vitis vinifera HOM05D000665 ORTHO05D000140 8.5e-06 55.1 138 25.4


User provided reference genes

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