Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb086590 Zea mays HOM05D007295 ORTHO05D007705 6.7e-87 323.9 159 100.0
Zm00001eb197800 Zea mays HOM05D007295 ORTHO05D007705 4.4e-70 268.1 149 89.9
Zm00001eb211670 Zea mays HOM05D007295 ORTHO05D007705 4.4e-70 268.1 149 89.9
Zm00001eb046270 Zea mays HOM05D007295 ORTHO05D007705 4.1e-68 261.5 129 98.4
Zm00001eb389250 Zea mays HOM05D007295 ORTHO05D007705 4.1e-68 261.5 129 98.4
Zm00001eb242210 Zea mays HOM05D007295 ORTHO05D007705 1.2e-67 260.0 129 97.7
Zm00001eb087940 Zea mays HOM05D007295 ORTHO05D007705 5.9e-67 257.7 129 96.9
Zm00001eb279690 Zea mays HOM05D007295 ORTHO05D007705 5.2e-55 218.0 139 79.9
Os02g0813200 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 1.1e-49 200.3 138 68.8
Os06g0595700 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 1.4e-47 193.4 138 67.4
Zm00001eb004080 Zea mays HOM05D007295 ORTHO05D007705 2.6e-46 189.1 94 94.7
Os09g0292300 Oryza sativa ssp. japonica HOM05D000034 ORTHO05D007705 7.5e-46 187.6 133 67.7
Zm00001eb018820 Zea mays HOM05D007295 ORTHO05D007705 3.7e-45 185.3 138 65.9
Zm00001eb345220 Zea mays HOM05D007295 ORTHO05D007705 1.9e-44 183.0 92 93.5
Zm00001eb300210 Zea mays HOM05D007295 ORTHO05D007705 6.0e-43 177.9 94 91.5
Zm00001eb090610 Zea mays HOM05D007295 ORTHO05D007705 1.6e-40 169.9 128 64.1
Zm00001eb019020 Zea mays HOM05D007295 ORTHO05D007705 2.4e-36 156.0 120 63.3
Zm00001eb412060 Zea mays HOM05D007295 ORTHO05D007705 3.2e-36 155.6 112 68.8
Zm00001eb015410 Zea mays HOM05D007295 ORTHO05D007705 2.7e-35 152.5 139 56.8
Os05g0218001 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 6.0e-35 151.4 141 55.3
Zm00001eb270430 Zea mays HOM05D007295 ORTHO05D007705 1.0e-34 150.6 143 55.2
Zm00001eb113300 Zea mays HOM05D007295 ORTHO05D007705 5.1e-34 148.3 139 56.1
Os12g0299650 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 2.5e-33 146.0 101 65.3
Zm00001eb063180 Zea mays HOM05D007295 ORTHO05D007705 4.3e-33 145.2 148 45.9
Zm00001eb273910 Zea mays HOM05D007295 ORTHO05D007705 4.3e-33 145.2 148 45.9
Os06g0481800 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 5.6e-33 144.8 101 63.4
Zm00001eb171470 Zea mays HOM05D007295 ORTHO05D007705 1.2e-32 143.7 148 45.3
Os01g0894050 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 1.6e-32 143.3 101 64.4
Zm00001eb237400 Zea mays HOM05D007295 ORTHO05D007705 8.1e-32 141.0 149 45.6
Zm00001eb010720 Zea mays HOM05D007295 ORTHO05D007705 1.1e-31 140.6 149 45.6
Zm00001eb086670 Zea mays HOM05D007295 ORTHO05D007705 1.1e-31 140.6 149 45.6
Zm00001eb367280 Zea mays HOM05D007295 ORTHO05D007705 1.1e-31 140.6 149 45.6
Zm00001eb401020 Zea mays HOM05D007295 ORTHO05D007705 1.1e-31 140.6 149 45.6
Zm00001eb024970 Zea mays HOM05D007295 ORTHO05D007705 8.9e-31 137.5 137 47.4
Os04g0422950 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 2.0e-30 136.3 97 63.9
Zm00001eb048300 Zea mays HOM05D007295 ORTHO05D007705 2.0e-30 136.3 149 45.0
Os11g0427500 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 6.4e-29 131.3 160 44.4
Zm00001eb121750 Zea mays HOM05D007295 ORTHO05D007705 5.4e-28 128.3 100 58.0
Os05g0498800 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 1.2e-27 127.1 95 64.2
Zm00001eb392180 Zea mays HOM05D007295 ORTHO05D007705 3.5e-27 125.6 111 51.4
Zm00001eb133080 Zea mays HOM05D007295 ORTHO05D007705 3.9e-26 122.1 123 48.8
Zm00001eb045190 Zea mays HOM05D007295 ORTHO05D007705 1.5e-25 120.2 99 56.6
Zm00001eb136070 Zea mays HOM05D007295 ORTHO05D007705 1.9e-25 119.8 78 66.7
Zm00001eb385640 Zea mays HOM05D007295 ORTHO05D007705 2.5e-25 119.4 99 56.6
Zm00001eb384140 Zea mays HOM05D007295 ORTHO05D007705 5.6e-25 118.2 78 65.4
Zm00001eb386100 Zea mays HOM05D007295 ORTHO05D007705 3.1e-23 112.5 114 45.6
Zm00001eb180120 Zea mays HOM05D007295 ORTHO05D007705 2.0e-22 109.8 104 47.1
Zm00001eb035520 Zea mays HOM05D011105 ORTHO05D007705 3.4e-22 109.0 104 47.1
Zm00001eb090020 Zea mays HOM05D007295 ORTHO05D007705 3.4e-22 109.0 104 47.1
Zm00001eb122800 Zea mays HOM05D007295 ORTHO05D007705 3.4e-22 109.0 101 45.5
Zm00001eb424390 Zea mays HOM05D007295 ORTHO05D007705 3.8e-21 105.5 100 47.0
Os04g0463600 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 1.9e-20 103.2 100 49.0
Zm00001eb020010 Zea mays HOM05D007295 ORTHO05D007705 9.3e-20 100.9 104 45.2
Zm00001eb338830 Zea mays HOM05D007295 ORTHO05D007705 1.7e-18 96.7 98 43.9
Zm00001eb136260 Zea mays HOM05D007295 ORTHO05D007705 3.0e-18 95.9 102 49.0
Zm00001eb117650 Zea mays HOM05D007295 ORTHO05D007705 5.1e-18 95.1 114 43.9
Zm00001eb274350 Zea mays HOM05D007295 ORTHO05D007705 5.1e-18 95.1 98 42.9
Zm00001eb236750 Zea mays HOM05D007295 ORTHO05D007705 6.6e-18 94.7 98 42.9
Zm00001eb375080 Zea mays HOM05D007295 ORTHO05D007705 2.5e-17 92.8 98 41.8
Zm00001eb373830 Zea mays HOM05D007295 ORTHO05D007705 3.3e-17 92.4 98 41.8
Zm00001eb093810 Zea mays HOM05D007295 ORTHO05D007705 1.1e-12 77.4 131 32.1
Zm00001eb390800 Zea mays HOM05D007295 ORTHO05D007705 1.1e-12 77.4 139 39.6
Os10g0468301 Oryza sativa ssp. japonica HOM05D000665 ORTHO05D007705 1.4e-12 77.0 110 34.5
Zm00001eb056170 Zea mays HOM05D007295 ORTHO05D007705 1.9e-12 76.6 138 36.2
Zm00001eb391340 Zea mays HOM05D007295 ORTHO05D007705 1.9e-12 76.6 138 36.2
Zm00001eb196690 Zea mays HOM05D007295 ORTHO05D007705 2.4e-12 76.3 97 34.0
Os03g0643100 Oryza sativa ssp. japonica HOM05D000665 ORTHO05D007705 4.2e-12 75.5 145 31.7
Os07g0115800 Oryza sativa ssp. japonica HOM05D000665 ORTHO05D007705 4.2e-12 75.5 145 31.7
Os07g0210800 Oryza sativa ssp. japonica HOM05D000665 ORTHO05D007705 4.2e-12 75.5 145 31.7
Os09g0122200 Oryza sativa ssp. japonica HOM05D000665 ORTHO05D007705 4.2e-12 75.5 145 31.7
Zm00001eb001660 Zea mays HOM05D007295 ORTHO05D007705 7.1e-12 74.7 131 31.3
Zm00001eb379810 Zea mays HOM05D007295 ORTHO05D007705 3.5e-11 72.4 60 53.3
TAR381G0952 Trochodendron aralioides HOM05D000665 ORTHO05D003147 1.3e-10 70.5 140 29.3
FAN15G1296 Fragaria x ananassa HOM05D000665 ORTHO05D003147 1.5e-09 67.0 102 34.3
Prupe.1G367300 Prunus persica HOM05D000665 ORTHO05D003147 2.5e-09 66.2 100 35.0
RcHm_v2.0_Chr6g0302651 Rosa chinensis HOM05D000665 ORTHO05D000140 4.3e-09 65.5 120 30.8
Zm00001eb166860 Zea mays HOM05D007295 ORTHO05D007705 1.3e-08 63.9 42 66.7
Zm00001eb380560 Zea mays HOM05D007295 ORTHO05D007705 1.6e-08 63.5 32 87.5
Nn5g30764 Nelumbo nucifera HOM05D000665 ORTHO05D003147 2.1e-08 63.2 106 34.0
Lj7C473G5 Lonicera japonica HOM05D000665 ORTHO05D000140 2.8e-08 62.8 102 34.3
Zm00001eb180320 Zea mays HOM05D007295 ORTHO05D007705 4.8e-08 62.0 32 84.4
ATR0585G101 Amborella trichopoda HOM05D000665 ORTHO05D000140 8.1e-08 61.2 99 29.3
DCAR_014037 Daucus carota HOM05D000665 ORTHO05D003147 5.3e-07 58.5 104 34.6
QL03p004678 Quercus lobata HOM05D000665 ORTHO05D000140 5.3e-07 58.5 118 29.7
ATR0081G006 Amborella trichopoda HOM05D000665 ORTHO05D000140 1.2e-06 57.4 99 31.3
CSS0030989 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000140 1.2e-06 57.4 110 29.1
ATR0776G040 Amborella trichopoda HOM05D000665 ORTHO05D000140 1.5e-06 57.0 99 29.3
PGR044G1967 Punica granatum HOM05D000665 ORTHO05D000140 1.5e-06 57.0 132 29.5
GSVIVG01009883001 Vitis vinifera HOM05D000665 ORTHO05D003147 1.5e-06 57.0 102 33.3
CiPaw.15G145500 Carya illinoinensis HOM05D000665 ORTHO05D000140 2.0e-06 56.6 123 27.6
TWI34G1677 Tripterygium wilfordii HOM05D000665 ORTHO05D000140 2.0e-06 56.6 130 31.5
MBI16_g18429_MAGBIO Magnolia biondii HOM05D000665 ORTHO05D000140 3.4e-06 55.8 107 31.8
MBI19_g41922_MAGBIO Magnolia biondii HOM05D000665 ORTHO05D000140 3.4e-06 55.8 107 31.8
QL03p004820 Quercus lobata HOM05D000665 ORTHO05D000140 4.5e-06 55.5 117 28.2
Rhsim04G0014700 Rhododendron simsii HOM05D000665 ORTHO05D003147 4.5e-06 55.5 103 29.1
MBI02_g21882_MAGBIO Magnolia biondii HOM05D000665 ORTHO05D000140 5.8e-06 55.1 105 27.6
VMungo1215G1134 Vigna mungo HOM05D000665 ORTHO05D003147 5.8e-06 55.1 102 33.3
Actinidia23623 Actinidia chinensis HOM05D000665 ORTHO05D000140 7.6e-06 54.7 101 29.7
Hma1.2p1_0494F.1_g165560 Hydrangea macrophylla HOM05D000665 ORTHO05D000140 7.6e-06 54.7 113 30.1
Lalb_Chr11g0063491 Lupinus albus HOM05D000665 ORTHO05D000140 7.6e-06 54.7 134 29.1
Lalb_Chr24g0401881 Lupinus albus HOM05D000665 ORTHO05D000140 7.6e-06 54.7 118 27.1
MBI10_g24541_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 7.6e-06 54.7 111 28.8
CSS0018305 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D003147 9.9e-06 54.3 105 29.5
CANSAT64G0977 Cannabis sativa HOM05D000665 ORTHO05D000140 9.9e-06 54.3 162 31.5
Cpa.g.sc48.26 Carica papaya HOM05D000665 ORTHO05D000140 9.9e-06 54.3 103 28.2
Eucgr.H01077 Eucalyptus grandis HOM05D000665 ORTHO05D000140 9.9e-06 54.3 104 28.8
Glyma.04G060100 Glycine max HOM05D000665 ORTHO05D000140 9.9e-06 54.3 158 25.9
Lsat_1_v5_gn_6_77601 Lactuca sativa HOM05D000665 ORTHO05D000140 9.9e-06 54.3 110 31.8
Zm00001eb309640 Zea mays HOM05D007295 ORTHO05D007705 9.9e-06 54.3 60 38.3


User provided reference genes

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