Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb086580 Zea mays HOM05D012048 ORTHO05D013159 0.0e+00 2251.9 1095 100.0
Os04g0431700 Oryza sativa ssp. japonica HOM05D012048 ORTHO05D013159 3.2e-196 689.9 1083 40.6
Os08g0506100 Oryza sativa ssp. japonica HOM05D012048 ORTHO05D013159 3.4e-161 573.5 820 44.5
Os04g0166000 Oryza sativa ssp. japonica HOM05D012048 ORTHO05D013159 3.0e-154 550.4 1116 35.3
Zm00001eb063210 Zea mays HOM05D012048 ORTHO05D013159 8.0e-147 525.8 1132 36.6
Os04g0201000 Oryza sativa ssp. japonica HOM05D012048 ORTHO05D013159 2.0e-134 484.6 1099 33.5
Os01g0518651 Oryza sativa ssp. japonica HOM05D012048 ORTHO05D013159 1.1e-108 399.1 784 36.7
Zm00001eb115200 Zea mays HOM05D012048 ORTHO05D013159 1.6e-102 378.6 1144 30.8
Os04g0115650 Oryza sativa ssp. japonica HOM05D012048 ORTHO05D013159 1.4e-87 328.9 1051 30.6
Zm00001eb114170 Zea mays HOM05D012048 ORTHO05D013159 2.0e-81 308.5 1054 29.5
Os04g0165900 Oryza sativa ssp. japonica HOM05D012048 ORTHO05D013159 1.7e-56 225.7 511 34.2
Zm00001eb063200 Zea mays HOM05D012048 ORTHO05D013159 8.5e-56 223.4 480 35.2
MBI18_g24132_MAGBIO Magnolia biondii HOM05D008432 ORTHO05D010288 4.3e-31 141.4 748 25.4
MBI05_g05724_MAGBIO Magnolia biondii HOM05D008432 ORTHO05D010288 1.5e-28 132.9 572 28.3
MBI18_g07920_MAGBIO Magnolia biondii HOM05D008432 ORTHO05D010288 2.6e-20 105.5 540 24.6
MBI18_g30582_MAGBIO Magnolia biondii HOM05D008432 ORTHO05D010288 1.4e-18 99.8 757 25.2
MBI15_g26318_MAGBIO Magnolia biondii HOM05D008432 ORTHO05D010288 2.4e-18 99.0 529 25.1
MBI18_g33707_MAGBIO Magnolia biondii HOM05D008432 ORTHO05D010288 3.9e-16 91.7 672 25.3
MBI15_g15093_MAGBIO Magnolia biondii HOM05D003506 ORTHO05D010288 6.6e-16 90.9 531 23.7
Os04g0401900 Oryza sativa ssp. japonica HOM05D051279 ORTHO05D013159 1.1e-15 90.1 284 29.2
MBI18_g46344_MAGBIO Magnolia biondii HOM05D008432 ORTHO05D010288 7.3e-15 87.4 160 35.6
Zm00001eb114160 Zea mays HOM05D012048 ORTHO05D013159 2.1e-14 85.9 80 58.8
MBI18_g07919_MAGBIO Magnolia biondii HOM05D008432 ORTHO05D010288 2.8e-14 85.5 160 35.0
Aqoxy1G04135 Aquilegia oxysepala HOM05D003506 ORTHO05D004063 1.8e-13 82.8 677 23.5
Aqoxy2G00596 Aquilegia oxysepala HOM05D008432 ORTHO05D010288 2.3e-13 82.4 455 25.5
Duzib268G1572 Durio zibethinus HOM05D000101 ORTHO05D000089 1.2e-12 80.1 197 26.4
Duzib268G1464 Durio zibethinus HOM05D000101 ORTHO05D000089 2.0e-12 79.3 212 28.8
MBI15_g15098_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 2.6e-12 79.0 503 23.9
Gohir.D05G360300 Gossypium hirsutum HOM05D000101 ORTHO05D000089 4.4e-12 78.2 204 25.5
MBI15_g15090_MAGBIO Magnolia biondii HOM05D003506 ORTHO05D010288 7.5e-12 77.4 233 29.2
Nn1g09660 Nelumbo nucifera HOM05D000101 ORTHO05D002559 7.5e-12 77.4 191 29.8
Hund21508 Selenicereus undatus HOM05D000092 ORTHO05D015437 7.5e-12 77.4 158 32.3
Hund31065 Selenicereus undatus HOM05D000092 ORTHO05D015437 7.5e-12 77.4 158 32.3
Ciclev10023911m.g Citrus clementina HOM05D000101 ORTHO05D002559 1.3e-11 76.6 215 29.8
Thecc.07G090800 Theobroma cacao HOM05D000101 ORTHO05D000089 1.3e-11 76.6 208 26.9
Duzib268G0201 Durio zibethinus HOM05D000101 ORTHO05D000089 2.9e-11 75.5 212 28.3
Gohir.A04G033651 Gossypium hirsutum HOM05D000101 ORTHO05D000089 2.9e-11 75.5 228 25.0
Gohir.D05G353400 Gossypium hirsutum HOM05D000101 ORTHO05D000089 2.9e-11 75.5 253 26.5
Gorai.009G432400 Gossypium raimondii HOM05D000101 ORTHO05D000089 4.9e-11 74.7 204 26.0
Rhsim04G0236300 Rhododendron simsii HOM05D000101 ORTHO05D000089 4.9e-11 74.7 264 29.5
Dinv19546 Davidia involucrata HOM05D000101 ORTHO05D000089 6.4e-11 74.3 154 32.5
Atru.chr4.1399 Acer truncatum HOM05D000101 ORTHO05D002559 8.3e-11 73.9 187 28.9
Rhsim04G0235600 Rhododendron simsii HOM05D000101 ORTHO05D000089 8.3e-11 73.9 459 27.5
Actinidia26187 Actinidia chinensis HOM05D000101 ORTHO05D003282 1.1e-10 73.6 445 23.1
MBI11_g25848_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D000089 2.4e-10 72.4 218 26.6
Dinv19548 Davidia involucrata HOM05D000101 ORTHO05D000089 3.2e-10 72.0 167 31.1
Gohir.D05G353800 Gossypium hirsutum HOM05D000101 ORTHO05D000089 4.1e-10 71.6 254 25.2
Rhsim04G0238000 Rhododendron simsii HOM05D000101 ORTHO05D003282 4.1e-10 71.6 218 29.8
CSS0035281 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D000089 5.4e-10 71.2 235 26.4
Dinv02505 Davidia involucrata HOM05D000101 ORTHO05D000089 5.4e-10 71.2 166 32.5
Dinv19550 Davidia involucrata HOM05D000101 ORTHO05D000089 5.4e-10 71.2 166 32.5
Gohir.A04G030608 Gossypium hirsutum HOM05D000101 ORTHO05D000089 5.4e-10 71.2 217 26.3
MBI11_g05442_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D000089 5.4e-10 71.2 214 25.2
QL93p1902_0177 Quercus lobata HOM05D000005 ORTHO05D002559 5.4e-10 71.2 181 29.3
QL12p023642 Quercus lobata HOM05D000101 ORTHO05D000089 7.1e-10 70.9 142 31.0
Thhalv10024353m.g Eutrema salsugineum HOM05D000101 ORTHO05D000089 9.2e-10 70.5 182 28.6
Gohir.A04G033375 Gossypium hirsutum HOM05D000101 ORTHO05D000089 9.2e-10 70.5 210 26.2
Gorai.009G382700 Gossypium raimondii HOM05D000101 ORTHO05D000089 9.2e-10 70.5 210 25.2
Sp7g24110 Schrenkiella parvula HOM05D000101 ORTHO05D000089 9.2e-10 70.5 182 29.7
Rhsim04G0236100 Rhododendron simsii HOM05D000101 ORTHO05D000089 1.2e-09 70.1 237 27.0
Rhsim04G0237100 Rhododendron simsii HOM05D000101 ORTHO05D000089 1.2e-09 70.1 218 29.4
Gohir.D01G036950 Gossypium hirsutum HOM05D000101 ORTHO05D000089 1.6e-09 69.7 208 23.6
MBI11_g07701_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D000089 1.6e-09 69.7 219 26.9
Manes.10G030001 Manihot esculenta HOM05D000101 ORTHO05D000089 1.6e-09 69.7 172 25.6
MBI15_g15103_MAGBIO Magnolia biondii HOM05D008432 ORTHO05D010288 2.1e-09 69.3 214 28.0
CSS0033817 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D000089 2.7e-09 68.9 205 27.8
QL02p102345 Quercus lobata HOM05D000101 ORTHO05D003282 2.7e-09 68.9 184 27.2
QL02p102988 Quercus lobata HOM05D000101 ORTHO05D003282 2.7e-09 68.9 184 27.2
Hund20778 Selenicereus undatus HOM05D000092 ORTHO05D000042 3.5e-09 68.6 183 25.1
Cc00_g02040 Coffea canephora HOM05D000101 ORTHO05D000089 4.6e-09 68.2 220 26.4
Gohir.D05G347200 Gossypium hirsutum HOM05D000101 ORTHO05D000089 4.6e-09 68.2 463 20.7
Gorai.009G383000 Gossypium raimondii HOM05D000101 ORTHO05D000089 4.6e-09 68.2 209 24.4
MBI18_g30506_MAGBIO Magnolia biondii HOM05D008432 ORTHO05D010288 4.6e-09 68.2 159 34.6
QL12p023591 Quercus lobata HOM05D000101 ORTHO05D000089 4.6e-09 68.2 214 25.2
QL93p1902_0670 Quercus lobata HOM05D000101 ORTHO05D002559 4.6e-09 68.2 181 29.3
Rhsim04G0236700 Rhododendron simsii HOM05D000101 ORTHO05D000089 4.6e-09 68.2 195 29.7
Aqoxy4G01395 Aquilegia oxysepala HOM05D000101 ORTHO05D000089 6.0e-09 67.8 233 25.3
CSS0008325 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D000089 6.0e-09 67.8 165 30.3
CARHR233600 Cardamine hirsuta HOM05D000101 ORTHO05D000089 7.8e-09 67.4 184 28.3
Ciclev10018458m.g Citrus clementina HOM05D000005 ORTHO05D002559 7.8e-09 67.4 203 27.6
Duzib213G0389 Durio zibethinus HOM05D000101 ORTHO05D000089 7.8e-09 67.4 256 23.4
Gohir.D05G350000 Gossypium hirsutum HOM05D000101 ORTHO05D000089 7.8e-09 67.4 209 25.4
Hund21502 Selenicereus undatus HOM05D000092 ORTHO05D015437 7.8e-09 67.4 147 31.3
Gorai.009G379500 Gossypium raimondii HOM05D000101 ORTHO05D000089 1.0e-08 67.0 209 25.8
Rhsim04G0237800 Rhododendron simsii HOM05D000101 ORTHO05D000089 1.0e-08 67.0 195 29.2
Thecc.04G166600 Theobroma cacao HOM05D000101 ORTHO05D002559 1.0e-08 67.0 202 27.7
Aa31LG3G500 Aethionema arabicum HOM05D000101 ORTHO05D000089 1.3e-08 66.6 184 27.7
Aqoxy3G02620 Aquilegia oxysepala HOM05D000101 ORTHO05D000089 1.3e-08 66.6 202 25.7
Ciclev10007349m.g Citrus clementina HOM05D000101 ORTHO05D000089 1.3e-08 66.6 213 23.5
TAR365G0433 Trochodendron aralioides HOM05D000101 ORTHO05D000089 1.3e-08 66.6 160 27.5
TAR636G0948 Trochodendron aralioides HOM05D000101 ORTHO05D000089 1.3e-08 66.6 207 29.0
ATR1120G092 Amborella trichopoda HOM05D000101 ORTHO05D000089 1.7e-08 66.2 160 34.4
Duzib212G0304 Durio zibethinus HOM05D000101 ORTHO05D002559 1.7e-08 66.2 204 28.4
Gohir.D05G351100 Gossypium hirsutum HOM05D000101 ORTHO05D000089 2.3e-08 65.9 205 25.4
Aqoxy5G02959 Aquilegia oxysepala HOM05D000101 ORTHO05D000089 3.9e-08 65.1 128 32.8
Gohir.D05G351200 Gossypium hirsutum HOM05D000101 ORTHO05D000089 3.9e-08 65.1 218 24.8
QL08p018363 Quercus lobata HOM05D000101 ORTHO05D000089 3.9e-08 65.1 237 24.9
ATR0090G022 Amborella trichopoda HOM05D000101 ORTHO05D000089 5.1e-08 64.7 174 31.6
Gohir.D05G354700 Gossypium hirsutum HOM05D000101 ORTHO05D000089 5.1e-08 64.7 185 27.6
Gorai.009G375100 Gossypium raimondii HOM05D000101 ORTHO05D000089 5.1e-08 64.7 147 26.5
QL10p054822 Quercus lobata HOM05D000101 ORTHO05D003282 5.1e-08 64.7 195 25.6
ATR0680G166 Amborella trichopoda HOM05D000101 ORTHO05D000089 6.6e-08 64.3 176 30.1
Thecc.03G111000 Theobroma cacao HOM05D000101 ORTHO05D003282 6.6e-08 64.3 197 25.4
Ciclev10024859m.g Citrus clementina HOM05D000101 ORTHO05D000089 8.6e-08 63.9 129 31.8
Gohir.A10G142900 Gossypium hirsutum HOM05D000101 ORTHO05D002559 8.6e-08 63.9 207 28.0
Gorai.002G044700 Gossypium raimondii HOM05D000101 ORTHO05D000089 8.6e-08 63.9 210 23.8
Gorai.009G381300 Gossypium raimondii HOM05D000101 ORTHO05D000089 8.6e-08 63.9 146 27.4
Gorai.009G387500 Gossypium raimondii HOM05D000101 ORTHO05D000089 8.6e-08 63.9 234 25.2
Potri.001G433466 Populus trichocarpa HOM05D000092 ORTHO05D000042 8.6e-08 63.9 164 26.8
Hund21506 Selenicereus undatus HOM05D000092 ORTHO05D015437 8.6e-08 63.9 147 29.9
Migut.D01702 Erythranthe guttata HOM05D000101 ORTHO05D000089 1.1e-07 63.5 150 30.7
Gohir.A11G285300 Gossypium hirsutum HOM05D000101 ORTHO05D000089 1.1e-07 63.5 184 24.5
Gohir.D05G354400 Gossypium hirsutum HOM05D000101 ORTHO05D000089 1.1e-07 63.5 185 26.5
ATR0037G066 Amborella trichopoda HOM05D000101 ORTHO05D000089 1.5e-07 63.2 128 34.4
Gohir.D05G350200 Gossypium hirsutum HOM05D000101 ORTHO05D000089 1.5e-07 63.2 210 25.7
Gohir.D10G211800 Gossypium hirsutum HOM05D000101 ORTHO05D000089 1.5e-07 63.2 197 23.9
Gorai.009G380000 Gossypium raimondii HOM05D000101 ORTHO05D000089 1.9e-07 62.8 210 25.7
COL.COLO4_08147 Corchorus olitorius HOM05D000101 ORTHO05D002559 2.5e-07 62.4 188 24.5
Gohir.A04G036100 Gossypium hirsutum HOM05D000101 ORTHO05D000089 2.5e-07 62.4 146 26.0
RhsimUnG0074400 Rhododendron simsii HOM05D000101 ORTHO05D003282 2.5e-07 62.4 185 27.0
Hund21825 Selenicereus undatus HOM05D000092 ORTHO05D015437 2.5e-07 62.4 153 29.4
SGA_v2.0_scaffold69G23083 Striga asiatica HOM05D003506 ORTHO05D004063 3.3e-07 62.0 198 28.3
CSS0004355 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D000089 4.3e-07 61.6 207 24.2
Gorai.009G380200 Gossypium raimondii HOM05D000101 ORTHO05D000089 4.3e-07 61.6 205 24.9
Os04g0295500 Oryza sativa ssp. japonica HOM05D012048 ORTHO05D013159 4.3e-07 61.6 102 41.2
PGR044G2192 Punica granatum HOM05D000101 ORTHO05D000089 4.3e-07 61.6 130 30.8
Aqoxy4G00407 Aquilegia oxysepala HOM05D000101 ORTHO05D000089 5.6e-07 61.2 129 33.3
Gohir.A02G010125 Gossypium hirsutum HOM05D000101 ORTHO05D002559 5.6e-07 61.2 187 27.8
Gohir.D05G353200 Gossypium hirsutum HOM05D000101 ORTHO05D000089 5.6e-07 61.2 184 27.7
Gorai.009G385200 Gossypium raimondii HOM05D000101 ORTHO05D000089 5.6e-07 61.2 209 24.9
Gorai.009G386200 Gossypium raimondii HOM05D000101 ORTHO05D000089 5.6e-07 61.2 210 24.8
Prupe.2G029200 Prunus persica HOM05D000092 ORTHO05D000042 5.6e-07 61.2 171 26.3
Eucgr.G01856 Eucalyptus grandis HOM05D000101 ORTHO05D000089 7.3e-07 60.8 154 29.2
Gohir.D05G352800 Gossypium hirsutum HOM05D000101 ORTHO05D000089 7.3e-07 60.8 220 25.0
Gorai.005G012700 Gossypium raimondii HOM05D000101 ORTHO05D002559 7.3e-07 60.8 186 27.4
Gorai.009G379800 Gossypium raimondii HOM05D000101 ORTHO05D000089 7.3e-07 60.8 209 24.4
Gorai.009G385400 Gossypium raimondii HOM05D000101 ORTHO05D000089 7.3e-07 60.8 185 27.0
Rhsim13G0171300 Rhododendron simsii HOM05D000101 ORTHO05D000089 7.3e-07 60.8 196 26.5
Gorai.009G381800 Gossypium raimondii HOM05D000101 ORTHO05D000089 9.5e-07 60.5 209 23.9
HanXRQChr03g0065841 Helianthus annuus HOM05D000101 ORTHO05D003282 9.5e-07 60.5 186 26.3
QL02p102834 Quercus lobata HOM05D000101 ORTHO05D003282 9.5e-07 60.5 200 25.0
QL12p023483 Quercus lobata HOM05D000101 ORTHO05D000089 9.5e-07 60.5 141 29.1
QL12p023623 Quercus lobata HOM05D000101 ORTHO05D000089 9.5e-07 60.5 180 29.4
Hund03193 Selenicereus undatus HOM05D000101 ORTHO05D000286 9.5e-07 60.5 201 25.9
CiPaw.16G011600 Carya illinoinensis HOM05D000092 ORTHO05D000042 1.2e-06 60.1 179 25.7
Gohir.D05G349900 Gossypium hirsutum HOM05D000101 ORTHO05D000089 1.2e-06 60.1 156 28.2
MBI16_g26396_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D000089 1.2e-06 60.1 139 30.2
TAR636G3578 Trochodendron aralioides HOM05D000092 ORTHO05D000042 1.2e-06 60.1 166 26.5
arahy.Tifrunner.gnm1.ann1.U8DE7V Arachis hypogaea HOM05D000092 ORTHO05D000042 1.6e-06 59.7 219 26.0
Gohir.D05G354940 Gossypium hirsutum HOM05D000101 ORTHO05D000089 1.6e-06 59.7 210 24.8
Lsat_1_v5_gn_2_9780 Lactuca sativa HOM05D000092 ORTHO05D000042 1.6e-06 59.7 128 34.4
TPR.G34965 Trifolium pratense HOM05D000092 ORTHO05D000042 1.6e-06 59.7 127 26.8
Duzib151G1056 Durio zibethinus HOM05D000101 ORTHO05D002559 2.1e-06 59.3 190 24.2
Gorai.009G379900 Gossypium raimondii HOM05D000101 ORTHO05D000089 2.1e-06 59.3 146 24.7
Gorai.009G381500 Gossypium raimondii HOM05D000101 ORTHO05D000089 2.1e-06 59.3 155 25.2
QL08p018668 Quercus lobata HOM05D000101 ORTHO05D000089 2.1e-06 59.3 148 29.7
SalBow7G0315 Salvia bowleyana HOM05D000101 ORTHO05D000089 2.8e-06 58.9 149 30.2
SalBow7G0881 Salvia bowleyana HOM05D000101 ORTHO05D000089 2.8e-06 58.9 156 26.3
TAR369G0608 Trochodendron aralioides HOM05D000092 ORTHO05D000042 2.8e-06 58.9 159 28.9
Aqoxy4G00215 Aquilegia oxysepala HOM05D023297 ORTHO05D010288 3.6e-06 58.5 447 23.0
Gorai.009G385800 Gossypium raimondii HOM05D000101 ORTHO05D000089 3.6e-06 58.5 165 25.5
Lj6A175T21 Lonicera japonica HOM05D000101 ORTHO05D002559 3.6e-06 58.5 149 29.5
Rhsim13G0170800 Rhododendron simsii HOM05D000101 ORTHO05D000089 3.6e-06 58.5 206 28.6
EL10Ac4g08075 Beta vulgaris HOM05D000101 ORTHO05D000089 4.7e-06 58.2 219 23.3
CSS0039663 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D000089 4.7e-06 58.2 141 32.6
Cc00_g02130 Coffea canephora HOM05D000101 ORTHO05D000089 4.7e-06 58.2 156 28.8
COL.COLO4_16254 Corchorus olitorius HOM05D000101 ORTHO05D000089 4.7e-06 58.2 215 20.5
Duzib151G0870 Durio zibethinus HOM05D000101 ORTHO05D002559 4.7e-06 58.2 202 24.8
Gohir.D05G350400 Gossypium hirsutum HOM05D000101 ORTHO05D000089 4.7e-06 58.2 182 25.8
QL01p032883 Quercus lobata HOM05D000101 ORTHO05D000089 6.2e-06 57.8 143 30.1
Solyc11g007790.1 Solanum lycopersicum HOM05D000101 ORTHO05D000089 6.2e-06 57.8 136 25.0
Ciclev10018762m.g Citrus clementina HOM05D000101 ORTHO05D003282 8.1e-06 57.4 208 24.5
QL93p1902_0371 Quercus lobata HOM05D000101 ORTHO05D003282 8.1e-06 57.4 162 25.3
Rhsim13G0171500 Rhododendron simsii HOM05D000101 ORTHO05D000089 8.1e-06 57.4 200 27.5


User provided reference genes

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