Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb086320 Zea mays HOM05D006222 ORTHO05D007677 8.4e-138 493.8 273 100.0
Os04g0348100 Oryza sativa ssp. japonica HOM05D006222 ORTHO05D007677 5.9e-83 311.6 259 66.8
Potri.014G150100 Populus trichocarpa HOM05D006222 ORTHO05D007677 1.3e-50 204.1 175 57.7
Thhalv10017033m.g Eutrema salsugineum HOM05D006222 ORTHO05D007677 3.0e-50 203.0 172 59.3
Lalb_Chr06g0164621 Lupinus albus HOM05D006222 ORTHO05D007677 3.0e-50 203.0 170 59.4
RcHm_v2.0_Chr4g0409281 Rosa chinensis HOM05D006222 ORTHO05D007677 3.9e-50 202.6 173 57.8
A05p03600 Brassica napus HOM05D006222 ORTHO05D007677 5.1e-50 202.2 172 58.7
PSO357G0657 Papaver somniferum HOM05D006222 ORTHO05D007677 8.6e-50 201.4 185 55.7
BcaC02g12413 Brassica carinata HOM05D006222 ORTHO05D007677 1.1e-49 201.1 172 58.7
Oeu034479.1 Olea europaea HOM05D006222 ORTHO05D007677 1.1e-49 201.1 205 51.7
GSVIVG01031673001 Vitis vinifera HOM05D006222 ORTHO05D007677 1.5e-49 200.7 175 56.6
BraA05t19346Z Brassica rapa HOM05D006222 ORTHO05D007677 2.5e-49 199.9 172 58.7
Carub.0004s2559 Capsella rubella HOM05D006222 ORTHO05D007677 4.3e-49 199.1 251 47.8
C04p04200 Brassica napus HOM05D006222 ORTHO05D007677 5.6e-49 198.7 172 58.7
BolC4t22057H Brassica oleracea HOM05D006222 ORTHO05D007677 5.6e-49 198.7 172 58.7
FvH4_4g11840 Fragaria vesca HOM05D006222 ORTHO05D007677 7.3e-49 198.4 176 56.8
HanXRQChr14g0432081 Helianthus annuus HOM05D006222 ORTHO05D007677 9.6e-49 198.0 176 56.2
THA.LOC104804896 Tarenaya hassleriana HOM05D006222 ORTHO05D007677 9.6e-49 198.0 184 56.0
CDE05G0624 Ceratophyllum demersum HOM05D006222 ORTHO05D007677 1.2e-48 197.6 240 46.2
EL10Ac5g11641 Beta vulgaris HOM05D006222 ORTHO05D007677 1.6e-48 197.2 182 53.8
Cfa008558 Carpinus fangiana HOM05D006222 ORTHO05D007677 1.6e-48 197.2 244 46.7
ECA232G0640 Erigeron canadensis HOM05D006222 ORTHO05D007677 1.6e-48 197.2 171 58.5
Gohir.A10G136100 Gossypium hirsutum HOM05D006222 ORTHO05D007677 1.6e-48 197.2 172 55.2
Aqoxy5G00038 Aquilegia oxysepala HOM05D006222 ORTHO05D007677 2.1e-48 196.8 180 56.1
PSO170G0570 Papaver somniferum HOM05D006222 ORTHO05D007677 2.1e-48 196.8 185 54.1
Solyc05g053880.4 Solanum lycopersicum HOM05D006222 ORTHO05D007677 2.1e-48 196.8 185 56.8
MD04G1034000 Malus domestica HOM05D006222 ORTHO05D007677 3.6e-48 196.1 172 57.0
Atru.chr3.1674 Acer truncatum HOM05D006222 ORTHO05D007677 4.7e-48 195.7 181 55.2
Prupe.1G180600 Prunus persica HOM05D006222 ORTHO05D007677 4.7e-48 195.7 172 57.0
FAN17G0755 Fragaria x ananassa HOM05D006222 ORTHO05D007677 6.2e-48 195.3 176 56.2
Lsat_1_v5_gn_2_38021 Lactuca sativa HOM05D006222 ORTHO05D007677 6.2e-48 195.3 249 46.2
CiPaw.02G058300 Carya illinoinensis HOM05D006222 ORTHO05D007677 8.1e-48 194.9 171 57.3
Ciclev10021532m.g Citrus clementina HOM05D006222 ORTHO05D007677 8.1e-48 194.9 172 58.1
CARHR138180 Cardamine hirsuta HOM05D006222 ORTHO05D007677 1.1e-47 194.5 172 57.6
Duzib268G0300 Durio zibethinus HOM05D006222 ORTHO05D007677 1.1e-47 194.5 173 54.3
Gorai.011G144300 Gossypium raimondii HOM05D006222 ORTHO05D007677 1.1e-47 194.5 172 54.7
CSS0005997 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 1.4e-47 194.1 172 56.4
FAN12G2296 Fragaria x ananassa HOM05D006222 ORTHO05D007677 1.4e-47 194.1 176 56.2
Sp4g25240 Schrenkiella parvula HOM05D006222 ORTHO05D007677 1.4e-47 194.1 251 46.2
CSS0002349 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 1.8e-47 193.7 172 56.4
AT2G43110 Arabidopsis thaliana HOM05D006222 ORTHO05D007677 2.4e-47 193.4 251 44.2
Thecc.04G181000 Theobroma cacao HOM05D006222 ORTHO05D007677 4.0e-47 192.6 173 53.8
AL401U10010 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 8.9e-47 191.4 180 55.0
AL4G41770 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 8.9e-47 191.4 180 55.0
Cc03_g10460 Coffea canephora HOM05D006222 ORTHO05D007677 8.9e-47 191.4 172 57.6
DCAR_027540 Daucus carota HOM05D006222 ORTHO05D007677 8.9e-47 191.4 238 45.0
Gohir.D10G130500 Gossypium hirsutum HOM05D006222 ORTHO05D007677 8.9e-47 191.4 172 54.1
CDE05G2371 Ceratophyllum demersum HOM05D006222 ORTHO05D007677 1.2e-46 191.0 184 53.8
Dinv22662 Davidia involucrata HOM05D006222 ORTHO05D007677 2.0e-46 190.3 172 55.8
FAN12G2611 Fragaria x ananassa HOM05D006222 ORTHO05D007677 2.0e-46 190.3 190 52.6
CANSAT78G1479 Cannabis sativa HOM05D006222 ORTHO05D007677 2.6e-46 189.9 180 53.3
TAR362G1090 Trochodendron aralioides HOM05D006222 ORTHO05D007677 4.4e-46 189.1 246 44.7
BcaNung03540 Brassica carinata HOM05D006222 ORTHO05D007677 7.6e-46 188.3 252 45.6
Nn3g20171 Nelumbo nucifera HOM05D006222 ORTHO05D007677 7.6e-46 188.3 176 56.2
PGSC0003DMG400013073 Solanum tuberosum HOM05D006222 ORTHO05D007677 7.6e-46 188.3 172 58.1
COL.COLO4_07298 Corchorus olitorius HOM05D006222 ORTHO05D007677 9.9e-46 188.0 173 52.0
CsaV3_4G003830 Cucumis sativus L. HOM05D006222 ORTHO05D007677 9.9e-46 188.0 173 54.9
Migut.N00436 Erythranthe guttata HOM05D006222 ORTHO05D007677 9.9e-46 188.0 174 56.9
Sabra14G0113700 Salix brachista HOM05D006222 ORTHO05D007677 9.9e-46 188.0 195 50.3
Aa31LG1G24920 Aethionema arabicum HOM05D006222 ORTHO05D007677 1.7e-45 187.2 194 51.5
ClCG07G016700 Citrullus lanatus HOM05D006222 ORTHO05D007677 2.2e-45 186.8 173 52.6
arahy.Tifrunner.gnm1.ann1.VRQF1E Arachis hypogaea HOM05D006222 ORTHO05D007677 2.9e-45 186.4 176 54.0
Rhsim09G0036800 Rhododendron simsii HOM05D006222 ORTHO05D007677 2.9e-45 186.4 243 43.6
Ca_11418_v3 Cicer arietinum L. HOM05D006222 ORTHO05D007677 8.4e-45 184.9 174 52.9
Manes.11G113101 Manihot esculenta HOM05D006222 ORTHO05D007677 8.4e-45 184.9 167 53.3
Sopen05g032350 Solanum pennellii HOM05D006222 ORTHO05D007677 8.4e-45 184.9 172 56.4
TWI63G0082 Tripterygium wilfordii HOM05D006222 ORTHO05D007677 1.4e-44 184.1 180 52.2
Hund13303 Selenicereus undatus HOM05D006222 ORTHO05D007677 2.4e-44 183.3 181 52.5
SGA_v2.0_scaffold31G12583 Striga asiatica HOM05D006222 ORTHO05D007677 3.2e-44 183.0 249 47.0
Eucgr.A00219 Eucalyptus grandis HOM05D006222 ORTHO05D007677 5.4e-44 182.2 172 51.7
arahy.Tifrunner.gnm1.ann1.S0FJR3 Arachis hypogaea HOM05D006222 ORTHO05D007677 7.1e-44 181.8 178 52.2
Sc07g0007090 Simmondsia chinensis HOM05D006222 ORTHO05D007677 9.3e-44 181.4 176 51.7
SalBow3G0382 Salvia bowleyana HOM05D006222 ORTHO05D007677 1.2e-43 181.0 173 56.1
Sed0019288 Sechium edule HOM05D006222 ORTHO05D007677 1.2e-43 181.0 173 50.9
vmacro22720 Vaccinium macrocarpon HOM05D006222 ORTHO05D007677 1.2e-43 181.0 216 48.1
Ah.12g062130 Amaranthus hybridus HOM05D006222 ORTHO05D007677 1.6e-43 180.6 181 52.5
Glyma.20G248400 Glycine max HOM05D006222 ORTHO05D007677 1.6e-43 180.6 166 53.6
VMungo0720G0284 Vigna mungo HOM05D006222 ORTHO05D007677 3.5e-43 179.5 165 55.2
Phvul.007G002100 Phaseolus vulgaris HOM05D006222 ORTHO05D007677 4.6e-43 179.1 165 53.9
Duzib212G0460 Durio zibethinus HOM05D006222 ORTHO05D007677 1.3e-42 177.6 172 52.3
ATR1089G038 Amborella trichopoda HOM05D006222 ORTHO05D007677 3.9e-42 176.0 174 50.6
Hma1.2p1_1477F.1_g285900 Hydrangea macrophylla HOM05D006222 ORTHO05D007677 6.6e-42 175.3 142 61.3
Medtr1g116820 Medicago truncatula HOM05D006222 ORTHO05D007677 3.3e-41 172.9 178 48.9
Lj5g0022978 Lotus japonicus HOM05D006222 ORTHO05D007677 4.3e-41 172.6 171 53.8
MSTRG.24605 Avicennia marina HOM05D006222 ORTHO05D007677 5.6e-41 172.2 248 46.0
PGR083G0744 Punica granatum HOM05D006222 ORTHO05D007677 1.3e-40 171.0 257 42.0
Lj3P863T15 Lonicera japonica HOM05D006222 ORTHO05D007677 4.8e-40 169.1 173 50.9
MELO3C017672.2 Cucumis melo HOM05D006222 ORTHO05D007677 6.2e-40 168.7 202 45.5
Psat0s4086g0080 Pisum sativum HOM05D006222 ORTHO05D007677 8.1e-40 168.3 173 49.7
CAN.G1310.8 Capsicum annuum HOM05D006222 ORTHO05D007677 6.9e-39 165.2 141 61.7
SMO331G0016 Selaginella moellendorffii HOM05D006222 ORTHO05D007677 2.6e-38 163.3 173 49.7
Actinidia32943 Actinidia chinensis HOM05D006222 ORTHO05D007677 3.4e-38 162.9 144 56.2
TPR.G8895 Trifolium pratense HOM05D006222 ORTHO05D007677 1.7e-37 160.6 184 47.8
Peaxi162Scf00423g00727 Petunia axillaris HOM05D006222 ORTHO05D007677 2.9e-37 159.8 145 60.0
PGSC0003DMG400023306 Solanum tuberosum HOM05D006222 ORTHO05D007677 3.8e-37 159.5 141 61.0
FvH4_6g25320 Fragaria vesca HOM05D006222 ORTHO05D007677 5.4e-36 155.6 176 50.6
Pp3c6_17250 Physcomitrium patens HOM05D006222 ORTHO05D007677 9.6e-33 144.8 254 38.2
Ah.12g060860 Amaranthus hybridus HOM05D006222 ORTHO05D007677 8.1e-32 141.7 181 45.3
unitig_578.g15951 Utricularia gibba HOM05D006222 ORTHO05D007677 5.3e-31 139.0 137 53.3
Mapoly0037s0098 Marchantia polymorpha HOM05D006222 ORTHO05D007677 1.1e-28 131.3 247 36.4
QL10p043789 Quercus lobata HOM05D006222 ORTHO05D007677 2.4e-28 130.2 133 48.1
QL10p047309 Quercus lobata HOM05D006222 ORTHO05D007677 1.2e-27 127.9 129 48.1
RhsimUnG0147000 Rhododendron simsii HOM05D006222 ORTHO05D007677 3.9e-26 122.9 266 34.6
Nitab4.5_0000161g0130 Nicotiana tabacum HOM05D006222 ORTHO05D007677 8.7e-26 121.7 118 52.5
CBR_g19109 Chara braunii HOM05D006222 ORTHO05D007677 3.7e-24 116.3 166 41.0
AUR62029129 Chenopodium quinoa HOM05D006222 ORTHO05D007677 2.4e-23 113.6 178 38.8
MD13G1276400 Malus domestica HOM05D006222 ORTHO05D007677 2.4e-23 113.6 123 48.8
Rhsim04G0094000 Rhododendron simsii HOM05D006222 ORTHO05D007677 2.4e-23 113.6 336 30.7
FAN05G2938 Fragaria x ananassa HOM05D006222 ORTHO05D007677 5.3e-23 112.5 120 50.0
Actinidia35881 Actinidia chinensis HOM05D006222 ORTHO05D007677 2.0e-22 110.5 132 48.5
AUR62014992 Chenopodium quinoa HOM05D006222 ORTHO05D007677 2.6e-22 110.2 89 53.9
Eucgr.L00544 Eucalyptus grandis HOM05D006222 ORTHO05D007677 7.6e-22 108.6 119 43.7
Haze_11066 Corylus avellana HOM05D006222 ORTHO05D007677 1.4e-20 104.4 93 52.7
Nitab4.5_0007578g0020 Nicotiana tabacum HOM05D006222 ORTHO05D007677 1.6e-19 100.9 105 49.5
Duzib268G0844 Durio zibethinus HOM05D006222 ORTHO05D007677 3.9e-18 96.3 95 47.4
AagrBONN_evm.TU.Sc2ySwM_362.227 Anthoceros agrestis HOM05D006222 ORTHO05D007677 9.0e-15 85.1 89 58.4
Actinidia27187 Actinidia chinensis HOM05D006222 ORTHO05D007677 7.6e-14 82.0 133 38.3
HPP92_024563 Vanilla planifolia HOM05D006222 ORTHO05D007677 7.6e-14 82.0 59 71.2
CSS0048231 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 2.7e-11 73.6 57 63.2
QL10p043792 Quercus lobata HOM05D006222 ORTHO05D007677 4.6e-11 72.8 54 66.7
QL10p047312 Quercus lobata HOM05D006222 ORTHO05D007677 1.0e-10 71.6 54 66.7
Haze_11067 Corylus avellana HOM05D006222 ORTHO05D007677 1.8e-10 70.9 54 64.8
SEGI_30148 Sequoiadendron giganteum HOM05D006222 ORTHO05D007677 3.1e-07 60.1 51 56.9


User provided reference genes

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