Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb085830 Zea mays HOM05D006138 ORTHO05D007778 1.0e-210 736.5 384 100.0
Os04g0379800 Oryza sativa ssp. japonica HOM05D006138 ORTHO05D007778 1.6e-81 307.4 407 45.5
TAR362G0162 Trochodendron aralioides HOM05D006138 ORTHO05D007778 9.6e-39 165.2 423 30.3
Dinv27208 Davidia involucrata HOM05D006138 ORTHO05D007778 4.5e-36 156.4 415 29.9
GSVIVG01020999001 Vitis vinifera HOM05D006138 ORTHO05D007778 1.4e-34 151.4 354 28.5
Cfa014952 Carpinus fangiana HOM05D006138 ORTHO05D007778 1.6e-33 147.9 405 30.6
Lj6g0009885 Lotus japonicus HOM05D006138 ORTHO05D007778 3.9e-32 143.3 347 32.0
CiPaw.02G065100 Carya illinoinensis HOM05D006138 ORTHO05D007778 5.1e-32 142.9 422 28.4
Nn1g07955 Nelumbo nucifera HOM05D006138 ORTHO05D007778 6.7e-32 142.5 415 28.7
Ca_16395_v3 Cicer arietinum L. HOM05D006138 ORTHO05D007778 3.1e-29 133.7 364 29.7
THA.LOC104804805 Tarenaya hassleriana HOM05D006138 ORTHO05D007778 5.3e-29 132.9 417 28.8
Thecc.04G198400 Theobroma cacao HOM05D006138 ORTHO05D007778 2.0e-28 131.0 410 27.8
Oeu025031.1 Olea europaea HOM05D006138 ORTHO05D007778 4.5e-28 129.8 407 26.3
Cc03_g08330 Coffea canephora HOM05D006138 ORTHO05D007778 5.9e-28 129.4 418 26.3
Sed0019269 Sechium edule HOM05D006138 ORTHO05D007778 1.0e-27 128.6 427 28.8
Cpa.g.sc83.29 Carica papaya HOM05D006138 ORTHO05D007778 5.0e-27 126.3 417 28.8
vmacro15557 Vaccinium macrocarpon HOM05D006138 ORTHO05D007778 5.0e-27 126.3 417 26.4
Gorai.009G350500 Gossypium raimondii HOM05D006138 ORTHO05D007778 6.5e-27 125.9 410 27.8
Psat5g102360 Pisum sativum HOM05D006138 ORTHO05D007778 1.1e-26 125.2 400 28.8
Gohir.A05G323100 Gossypium hirsutum HOM05D006138 ORTHO05D007778 1.4e-26 124.8 410 27.3
Manes.15G055900 Manihot esculenta HOM05D006138 ORTHO05D007778 1.4e-26 124.8 345 27.5
CsaV3_3G010820 Cucumis sativus L. HOM05D006138 ORTHO05D007778 7.2e-26 122.5 423 28.1
Lj6A392G25 Lonicera japonica HOM05D006138 ORTHO05D007778 7.2e-26 122.5 462 24.9
Glyma.11G255500 Glycine max HOM05D006138 ORTHO05D007778 9.4e-26 122.1 385 26.5
TWI09G0334 Tripterygium wilfordii HOM05D006138 ORTHO05D007778 1.6e-25 121.3 412 26.9
Potri.001G317900 Populus trichocarpa HOM05D006138 ORTHO05D007778 2.7e-25 120.6 351 28.5
CDE05G2116 Ceratophyllum demersum HOM05D006138 ORTHO05D007778 4.6e-25 119.8 349 28.1
PSO017G1394 Papaver somniferum HOM05D006138 ORTHO05D007778 4.6e-25 119.8 422 26.3
Atru.chr4.1604 Acer truncatum HOM05D006138 ORTHO05D007778 7.9e-25 119.0 336 29.8
CANSAT78G2425 Cannabis sativa HOM05D006138 ORTHO05D007778 1.0e-24 118.6 411 26.0
CANSAT78G1344 Cannabis sativa HOM05D006138 ORTHO05D007778 3.0e-24 117.1 410 26.1
Eucgr.H00039 Eucalyptus grandis HOM05D006138 ORTHO05D007778 3.0e-24 117.1 336 29.5
Gohir.D05G326000 Gossypium hirsutum HOM05D006138 ORTHO05D007778 3.0e-24 117.1 410 27.1
AL3G38900 Arabidopsis lyrata HOM05D006138 ORTHO05D007778 3.9e-24 116.7 411 26.0
Aqoxy2G04005 Aquilegia oxysepala HOM05D006138 ORTHO05D007778 8.8e-24 115.5 355 28.2
CSS0014339 Camellia sinensis var. sinensis HOM05D006138 ORTHO05D007778 8.8e-24 115.5 254 31.1
Aa31LG8G10490 Aethionema arabicum HOM05D006138 ORTHO05D007778 1.1e-23 115.2 421 26.1
ClCG05G003180 Citrullus lanatus HOM05D006138 ORTHO05D007778 1.1e-23 115.2 421 27.6
Lsat_1_v5_gn_6_60661 Lactuca sativa HOM05D006138 ORTHO05D007778 2.0e-23 114.4 419 26.0
MSTRG.9735 Avicennia marina HOM05D006138 ORTHO05D007778 2.6e-23 114.0 406 25.1
Peaxi162Scf00047g00230 Petunia axillaris HOM05D006138 ORTHO05D007778 3.3e-23 113.6 409 24.4
Carub.0003s2421 Capsella rubella HOM05D006138 ORTHO05D007778 4.4e-23 113.2 410 26.6
CSS0015025 Camellia sinensis var. sinensis HOM05D006138 ORTHO05D007778 5.7e-23 112.8 254 31.1
Sp3g21610 Schrenkiella parvula HOM05D006138 ORTHO05D007778 7.4e-23 112.5 416 27.2
Actinidia38756 Actinidia chinensis HOM05D006138 ORTHO05D007778 9.7e-23 112.1 419 26.5
Lj6A407G21 Lonicera japonica HOM05D006138 ORTHO05D007778 9.7e-23 112.1 273 28.6
VMungo1383G1063 Vigna mungo HOM05D000127 ORTHO05D000243 1.3e-22 111.7 392 25.8
Aqoxy360s001 Aquilegia oxysepala HOM05D006138 ORTHO05D007778 1.7e-22 111.3 357 28.3
DCAR_026640 Daucus carota HOM05D006138 ORTHO05D007778 2.8e-22 110.5 416 26.2
MD04G1014100 Malus domestica HOM05D006138 ORTHO05D007778 2.8e-22 110.5 401 24.9
Phvul.001G267400 Phaseolus vulgaris HOM05D006138 ORTHO05D007778 4.8e-22 109.8 334 27.5
Thhalv10002763m.g Eutrema salsugineum HOM05D006138 ORTHO05D007778 8.2e-22 109.0 343 28.0
TWI53G0419 Tripterygium wilfordii HOM05D006138 ORTHO05D007778 8.2e-22 109.0 407 26.0
HPP92_023190 Vanilla planifolia HOM05D006138 ORTHO05D007778 1.1e-21 108.6 403 27.3
Solyc09g092180.3 Solanum lycopersicum HOM05D006138 ORTHO05D007778 1.4e-21 108.2 417 26.1
Migut.G00745 Erythranthe guttata HOM05D006138 ORTHO05D007778 1.8e-21 107.8 407 24.6
Sopen09g035050 Solanum pennellii HOM05D006138 ORTHO05D007778 3.1e-21 107.1 418 25.8
BcaB06g26554 Brassica carinata HOM05D006138 ORTHO05D007778 4.1e-21 106.7 419 27.0
Nitab4.5_0000401g0220 Nicotiana tabacum HOM05D006138 ORTHO05D007778 4.1e-21 106.7 411 24.1
AUR62020846 Chenopodium quinoa HOM05D006138 ORTHO05D007778 5.3e-21 106.3 332 28.3
SalBow8G0822 Salvia bowleyana HOM05D006138 ORTHO05D007778 1.2e-20 105.1 433 24.0
AT3G23910 Arabidopsis thaliana HOM05D006138 ORTHO05D007778 1.5e-20 104.8 412 24.8
PGSC0003DMG400026422 Solanum tuberosum HOM05D006138 ORTHO05D007778 2.0e-20 104.4 376 26.3
BcaC06g35587 Brassica carinata HOM05D006138 ORTHO05D007778 2.6e-20 104.0 417 25.7
C07p13230 Brassica napus HOM05D006138 ORTHO05D007778 2.6e-20 104.0 417 25.7
Nitab4.5_0003101g0010 Nicotiana tabacum HOM05D006138 ORTHO05D007778 2.6e-20 104.0 332 26.2
SalBow8G2056 Salvia bowleyana HOM05D006138 ORTHO05D007778 5.9e-20 102.8 433 23.8
A07p08490 Brassica napus HOM05D006138 ORTHO05D007778 1.0e-19 102.1 416 25.0
CAN.G1565.12 Capsicum annuum HOM05D006138 ORTHO05D007778 1.0e-19 102.1 359 27.3
COL.COLO4_20197 Corchorus olitorius HOM05D006138 ORTHO05D007778 2.9e-19 100.5 411 25.3
PSO063G4547 Papaver somniferum HOM05D006138 ORTHO05D007778 5.0e-19 99.8 363 26.7
AT3G24255 Arabidopsis thaliana HOM05D006138 ORTHO05D007778 6.5e-19 99.4 342 26.9
BraA07t28634Z Brassica rapa HOM05D006138 ORTHO05D007778 6.5e-19 99.4 424 25.0
HanXRQChr07g0185891 Helianthus annuus HOM05D006138 ORTHO05D007778 8.5e-19 99.0 407 25.8
Sc13g0000300 Simmondsia chinensis HOM05D006138 ORTHO05D007778 1.1e-18 98.6 413 26.9
vmacro15559 Vaccinium macrocarpon HOM05D006138 ORTHO05D007778 1.4e-18 98.2 279 28.3
BolC7t41815H Brassica oleracea HOM05D006138 ORTHO05D007778 2.5e-18 97.4 420 25.2
PGR004G2157 Punica granatum HOM05D006138 ORTHO05D007778 2.5e-18 97.4 413 26.4
SGA_v2.0_scaffold19G08768 Striga asiatica HOM05D006138 ORTHO05D007778 3.2e-18 97.1 413 23.5
RhsimUnG0035600 Rhododendron simsii HOM05D006138 ORTHO05D007778 7.2e-18 95.9 545 24.2
Eucgr.L02926 Eucalyptus grandis HOM05D006138 ORTHO05D007778 1.2e-17 95.1 341 26.1
arahy.Tifrunner.gnm1.ann1.HYZ2KB Arachis hypogaea HOM05D006138 ORTHO05D007778 1.6e-17 94.7 402 26.1
Lalb_Chr23g0278421 Lupinus albus HOM05D006138 ORTHO05D007778 1.6e-17 94.7 248 28.6
arahy.Tifrunner.gnm1.ann1.3M33GA Arachis hypogaea HOM05D006138 ORTHO05D007778 1.8e-16 91.3 402 25.6
Rhsim02G0060900 Rhododendron simsii HOM05D006138 ORTHO05D007778 3.9e-16 90.1 562 23.3
TPR.G24162 Trifolium pratense HOM05D006138 ORTHO05D007778 7.4e-15 85.9 245 28.6
Glyma.18G001700 Glycine max HOM05D006138 ORTHO05D007778 9.7e-15 85.5 178 29.8
Ah.04g149320 Amaranthus hybridus HOM05D006138 ORTHO05D007778 2.0e-12 77.8 354 24.0
MELO3C006299.2 Cucumis melo HOM05D006138 ORTHO05D007778 2.0e-12 77.8 278 28.4
ECA233G3278 Erigeron canadensis HOM05D006138 ORTHO05D007778 2.0e-12 77.8 338 26.3
QL10p052654 Quercus lobata HOM05D006138 ORTHO05D007778 4.5e-12 76.6 534 21.2
AUR62018570 Chenopodium quinoa HOM05D006138 ORTHO05D007778 2.9e-11 73.9 325 24.0
Ciclev10005758m.g Citrus clementina HOM05D006138 ORTHO05D007778 5.5e-10 69.7 97 41.2
unitig_37.g12032 Utricularia gibba HOM05D006138 ORTHO05D007778 1.6e-09 68.2 358 24.9
Sabra16G0201200 Salix brachista HOM05D006138 ORTHO05D007778 2.1e-09 67.8 401 23.2
Hma1.2p1_0017F.1_g011170 Hydrangea macrophylla HOM05D006138 ORTHO05D007778 1.8e-08 64.7 197 28.4
EL10Ac3g07466 Beta vulgaris HOM05D006138 ORTHO05D007778 2.3e-08 64.3 335 24.8
Oeu025032.1 Olea europaea HOM05D006138 ORTHO05D007778 5.2e-08 63.2 121 28.1
RcHm_v2.0_Chr4g0414021 Rosa chinensis HOM05D006138 ORTHO05D007778 5.2e-08 63.2 309 25.2
Duzib268G1255 Durio zibethinus HOM05D006138 ORTHO05D007778 5.7e-07 59.7 152 27.0
Gohir.A12G078622 Gossypium hirsutum HOM05D006138 ORTHO05D007778 7.5e-07 59.3 276 25.4


User provided reference genes

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