Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb085670 Zea mays HOM05D008312 ORTHO05D010433 0.0e+00 1250.0 665 100.0
Zm00001eb171160 Zea mays HOM05D008312 ORTHO05D010433 9.0e-101 372.1 242 71.9
Zm00001eb009670 Zea mays HOM05D008312 ORTHO05D010433 2.2e-83 314.3 291 49.5
Zm00001eb346740 Zea mays HOM05D008312 ORTHO05D010433 6.3e-70 269.6 194 65.5
Zm00001eb105600 Zea mays HOM05D008312 ORTHO05D010433 4.2e-66 256.9 205 58.0
Zm00001eb330390 Zea mays HOM05D008312 ORTHO05D010433 9.1e-61 239.2 294 41.5
Zm00001eb346080 Zea mays HOM05D008312 ORTHO05D010433 1.4e-45 188.7 284 33.8
Zm00001eb388900 Zea mays HOM05D008312 ORTHO05D010433 1.3e-43 182.2 196 45.9
Zm00001eb388870 Zea mays HOM05D008312 ORTHO05D010433 3.8e-43 180.6 216 43.5
Zm00001eb076970 Zea mays HOM05D008312 ORTHO05D010433 1.2e-41 175.6 319 32.3
Zm00001eb062610 Zea mays HOM05D008312 ORTHO05D010433 4.0e-40 170.6 299 33.1
Zm00001eb225330 Zea mays HOM05D008312 ORTHO05D010433 6.8e-40 169.9 319 31.0
Zm00001eb425000 Zea mays HOM05D008312 ORTHO05D010433 9.8e-39 166.0 286 34.6
Zm00001eb290230 Zea mays HOM05D008312 ORTHO05D010433 5.0e-35 153.7 287 34.8
Zm00001eb179900 Zea mays HOM05D008312 ORTHO05D010433 7.3e-34 149.8 284 31.0
Zm00001eb219340 Zea mays HOM05D008312 ORTHO05D010433 7.5e-31 139.8 271 30.3
Os07g0190600 Oryza sativa ssp. japonica HOM05D008312 ORTHO05D007430 3.7e-30 137.5 308 28.9
COL.COLO4_06410 Corchorus olitorius HOM05D000096 ORTHO05D000045 6.2e-25 120.2 282 27.7
TWI73G0686 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 1.1e-24 119.4 269 27.9
Zm00001eb296900 Zea mays HOM05D008312 ORTHO05D010433 1.4e-24 119.0 216 32.4
TWI36G0416 Tripterygium wilfordii HOM05D002907 ORTHO05D007430 1.8e-24 118.6 334 26.0
TWI60G0328 Tripterygium wilfordii HOM05D002907 ORTHO05D007430 4.0e-24 117.5 269 27.9
TWI38G0982 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 7.5e-23 113.2 280 24.6
TWI39G0063 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 2.9e-22 111.3 284 26.4
Zm00001eb038940 Zea mays HOM05D008312 ORTHO05D010433 3.7e-22 110.9 218 31.2
Zm00001eb154040 Zea mays HOM05D008312 ORTHO05D010433 4.9e-22 110.5 290 26.2
Os03g0429900 Oryza sativa ssp. japonica HOM05D008312 ORTHO05D010433 8.3e-22 109.8 177 33.9
Thecc.06G012500 Theobroma cacao HOM05D007876 ORTHO05D007430 8.3e-22 109.8 252 26.6
TWI32G0194 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 1.4e-21 109.0 280 24.3
TWI63G1000 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 1.9e-21 108.6 268 25.4
TWI63G0188 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 3.2e-21 107.8 291 24.4
Zm00001eb432680 Zea mays HOM05D008312 ORTHO05D010433 3.2e-21 107.8 182 33.5
TWI53G0762 Tripterygium wilfordii HOM05D002907 ORTHO05D007430 1.6e-20 105.5 309 25.2
Zm00001eb261160 Zea mays HOM05D008312 ORTHO05D010433 2.1e-20 105.1 172 34.9
TWI56G0628 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 4.6e-20 104.0 285 22.5
TWI77G0313 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 4.6e-20 104.0 312 25.6
TWI14G1065 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 1.7e-19 102.1 310 25.2
RcHm_v2.0_Chr5g0066571 Rosa chinensis HOM05D006849 ORTHO05D003348 2.3e-19 101.7 274 25.2
TWI31G0819 Tripterygium wilfordii HOM05D002907 ORTHO05D007430 5.1e-19 100.5 325 24.3
Medtr4g070090 Medicago truncatula HOM05D002907 ORTHO05D000065 1.1e-18 99.4 287 27.2
Medtr5g027390 Medicago truncatula HOM05D002907 ORTHO05D000065 1.1e-18 99.4 292 26.7
TWI38G1001 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 2.5e-18 98.2 284 25.4
DCAR_025606 Daucus carota HOM05D012849 ORTHO05D000065 9.5e-18 96.3 284 22.2
Zm00001eb377220 Zea mays HOM05D008312 ORTHO05D010433 2.8e-17 94.7 143 37.1
Os07g0418100 Oryza sativa ssp. japonica HOM05D008312 ORTHO05D010433 3.6e-17 94.4 157 31.2
THA.LOC104813725 Tarenaya hassleriana HOM05D000313 ORTHO05D000065 3.6e-17 94.4 266 25.6
DCAR_010742 Daucus carota HOM05D002907 ORTHO05D000065 4.0e-16 90.9 293 25.6
DCAR_004276 Daucus carota HOM05D002907 ORTHO05D000065 5.2e-16 90.5 333 24.3
RcHm_v2.0_Chr5g0010461 Rosa chinensis HOM05D006849 ORTHO05D003348 5.2e-16 90.5 311 23.2
DCAR_007681 Daucus carota HOM05D002907 ORTHO05D000065 6.8e-16 90.1 282 26.2
DCAR_025622 Daucus carota HOM05D012849 ORTHO05D000065 8.9e-16 89.7 289 25.3
RcHm_v2.0_Chr2g0141711 Rosa chinensis HOM05D006849 ORTHO05D003348 2.0e-15 88.6 267 23.2
COL.COLO4_29959 Corchorus olitorius HOM05D000096 ORTHO05D000045 1.3e-14 85.9 243 25.9
Zm00001eb113510 Zea mays HOM05D008312 ORTHO05D010433 2.2e-14 85.1 129 34.9
A10p01000 Brassica napus HOM05D000305 ORTHO05D000065 2.9e-14 84.7 302 23.8
C02p38480 Brassica napus HOM05D000305 ORTHO05D000065 2.9e-14 84.7 302 21.9
Zm00001eb359870 Zea mays HOM05D008312 ORTHO05D010433 2.9e-14 84.7 141 34.0
COL.COLO4_26586 Corchorus olitorius HOM05D007876 ORTHO05D007430 4.9e-14 84.0 274 23.4
C07p30020 Brassica napus HOM05D000305 ORTHO05D000065 6.4e-14 83.6 292 21.6
BolC7t43542H Brassica oleracea HOM05D000305 ORTHO05D000065 1.1e-13 82.8 292 21.6
DCAR_031322 Daucus carota HOM05D002907 ORTHO05D000065 1.1e-13 82.8 297 23.6
PSO675G3596 Papaver somniferum HOM05D002907 ORTHO05D013727 1.1e-13 82.8 287 24.7
A09p07650 Brassica napus HOM05D000305 ORTHO05D000065 1.4e-13 82.4 302 23.8
Os09g0456900 Oryza sativa ssp. japonica HOM05D008312 ORTHO05D010433 1.4e-13 82.4 124 33.1
RcHm_v2.0_Chr5g0053321 Rosa chinensis HOM05D006849 ORTHO05D003348 1.4e-13 82.4 194 26.3
Zm00001eb045590 Zea mays HOM05D008312 ORTHO05D010433 1.4e-13 82.4 102 37.3
Os10g0197600 Oryza sativa ssp. japonica HOM05D008312 ORTHO05D010433 1.9e-13 82.0 129 34.9
Zm00001eb044850 Zea mays HOM05D008312 ORTHO05D010433 4.1e-13 80.9 153 32.7
Zm00001eb376030 Zea mays HOM05D008312 ORTHO05D010433 4.1e-13 80.9 141 33.3
BcaC02g08949 Brassica carinata HOM05D000305 ORTHO05D000065 7.1e-13 80.1 314 22.9
FAN20G3088 Fragaria x ananassa HOM05D007856 ORTHO05D003348 7.1e-13 80.1 266 21.1
BraA08t34530Z Brassica rapa HOM05D000313 ORTHO05D000065 9.2e-13 79.7 302 23.2
QL07p007200 Quercus lobata HOM05D000096 ORTHO05D000045 9.2e-13 79.7 263 22.1
AL5G11810 Arabidopsis lyrata HOM05D000353 ORTHO05D000174 1.2e-12 79.3 327 24.2
TPR.G2021 Trifolium pratense HOM05D000824 ORTHO05D003555 1.2e-12 79.3 290 25.5
Zm00001eb043290 Zea mays HOM05D008312 ORTHO05D010433 1.2e-12 79.3 125 32.0
A09p40830 Brassica napus HOM05D000313 ORTHO05D000065 1.6e-12 79.0 293 23.2
Ca_21770_v3 Cicer arietinum L. HOM05D000824 ORTHO05D003555 3.5e-12 77.8 294 25.5
BcaNung00173 Brassica carinata HOM05D000305 ORTHO05D000065 4.6e-12 77.4 293 22.9
BolC2t08071H Brassica oleracea HOM05D000305 ORTHO05D000065 4.6e-12 77.4 309 21.7
BcaC09g48338 Brassica carinata HOM05D000313 ORTHO05D000065 6.0e-12 77.0 285 22.5
RcHm_v2.0_Chr3g0491361 Rosa chinensis HOM05D006849 ORTHO05D003348 7.8e-12 76.6 184 29.9
HPP92_014050 Vanilla planifolia HOM05D000824 ORTHO05D003555 7.8e-12 76.6 302 24.5
C04p48570 Brassica napus HOM05D000305 ORTHO05D000065 1.0e-11 76.3 300 22.7
Potri.001G320601 Populus trichocarpa HOM05D018388 ORTHO05D003348 1.0e-11 76.3 169 27.2
BraA02t05509Z Brassica rapa HOM05D000305 ORTHO05D000065 1.3e-11 75.9 289 23.2
Thecc.04G109000 Theobroma cacao HOM05D007876 ORTHO05D007430 1.3e-11 75.9 149 26.8
DCAR_020214 Daucus carota HOM05D002907 ORTHO05D000065 1.7e-11 75.5 280 25.7
Thecc.06G139500 Theobroma cacao HOM05D007876 ORTHO05D010433 1.7e-11 75.5 184 26.6
BolC4t26450H Brassica oleracea HOM05D000305 ORTHO05D000065 2.3e-11 75.1 300 22.7
BcaB01g01346 Brassica carinata HOM05D000305 ORTHO05D000065 3.9e-11 74.3 290 22.8
C06p49580 Brassica napus HOM05D000305 ORTHO05D000065 3.9e-11 74.3 325 21.8
COL.COLO4_33080 Corchorus olitorius HOM05D007876 ORTHO05D007430 3.9e-11 74.3 269 24.2
BolC6t36447H Brassica oleracea HOM05D000305 ORTHO05D000065 5.1e-11 73.9 297 21.2
BraA06t25918Z Brassica rapa HOM05D000305 ORTHO05D000065 6.6e-11 73.6 340 21.5
RcHm_v2.0_Chr1g0371171 Rosa chinensis HOM05D006849 ORTHO05D003348 6.6e-11 73.6 282 22.3
A04p04140 Brassica napus HOM05D000305 ORTHO05D000065 8.6e-11 73.2 348 22.1
BolC9t58781H Brassica oleracea HOM05D000305 ORTHO05D000065 8.6e-11 73.2 295 23.4
BcaB02g07491 Brassica carinata HOM05D000305 ORTHO05D000065 1.1e-10 72.8 300 22.3
BcaB08g35796 Brassica carinata HOM05D000305 ORTHO05D000065 1.1e-10 72.8 299 22.4
C05p47720 Brassica napus HOM05D000313 ORTHO05D000065 1.1e-10 72.8 303 23.1
DCAR_002704 Daucus carota HOM05D002492 ORTHO05D002621 1.1e-10 72.8 278 24.8
Sp2g07180 Schrenkiella parvula HOM05D000305 ORTHO05D000065 1.9e-10 72.0 306 23.9
FAN22G1474 Fragaria x ananassa HOM05D006849 ORTHO05D003348 3.3e-10 71.2 242 23.6
Zm00001eb239440 Zea mays HOM05D000777 ORTHO05D010433 5.6e-10 70.5 95 38.9
Zm00001eb315800 Zea mays HOM05D000777 ORTHO05D010433 5.6e-10 70.5 95 38.9
Zm00001eb379360 Zea mays HOM05D008312 ORTHO05D010433 7.3e-10 70.1 95 38.9
Zm00001eb387180 Zea mays HOM05D008312 ORTHO05D010433 7.3e-10 70.1 88 42.0
AL1G48730 Arabidopsis lyrata HOM05D000353 ORTHO05D031316 9.6e-10 69.7 204 25.5
DCAR_010741 Daucus carota HOM05D019742 ORTHO05D019081 9.6e-10 69.7 168 27.4
BcaB03g16224 Brassica carinata HOM05D000313 ORTHO05D000065 1.2e-09 69.3 288 21.2
BolC2t12325H Brassica oleracea HOM05D000313 ORTHO05D000065 1.2e-09 69.3 280 20.7
Os01g0932000 Oryza sativa ssp. japonica HOM05D008312 ORTHO05D010433 1.2e-09 69.3 123 29.3
PGR083G2843 Punica granatum HOM05D000824 ORTHO05D003555 1.2e-09 69.3 315 24.4
Aqoxy1G03705 Aquilegia oxysepala HOM05D012322 ORTHO05D014819 1.6e-09 68.9 286 23.1
DCAR_018622 Daucus carota HOM05D002492 ORTHO05D002621 1.6e-09 68.9 269 23.0
BcaB04g16903 Brassica carinata HOM05D000313 ORTHO05D000065 2.1e-09 68.6 309 21.0
Os07g0113000 Oryza sativa ssp. japonica HOM05D008312 ORTHO05D010433 2.8e-09 68.2 125 29.6
Zm00001eb317980 Zea mays HOM05D008312 ORTHO05D010433 3.6e-09 67.8 81 43.2
BcaC03g15089 Brassica carinata HOM05D000305 ORTHO05D000065 4.7e-09 67.4 305 19.7
COL.COLO4_09218 Corchorus olitorius HOM05D007876 ORTHO05D007430 4.7e-09 67.4 247 21.5
AL4G27470 Arabidopsis lyrata HOM05D006838 ORTHO05D008915 6.2e-09 67.0 280 23.6
Os10g0377500 Oryza sativa ssp. japonica HOM05D008312 ORTHO05D010433 6.2e-09 67.0 101 32.7
Os12g0511750 Oryza sativa ssp. japonica HOM05D008312 ORTHO05D010433 6.2e-09 67.0 102 32.4
Zm00001eb043660 Zea mays HOM05D008312 ORTHO05D010433 6.2e-09 67.0 81 43.2
A08p32920 Brassica napus HOM05D000305 ORTHO05D000065 8.1e-09 66.6 288 20.8
BcaC04g18762 Brassica carinata HOM05D000305 ORTHO05D000065 1.1e-08 66.2 291 23.0
Carub.0016s0007 Capsella rubella HOM05D000353 ORTHO05D000174 1.1e-08 66.2 302 25.8
BraA03t12859Z Brassica rapa HOM05D000313 ORTHO05D000065 1.8e-08 65.5 290 20.3
C04p43730 Brassica napus HOM05D000305 ORTHO05D000065 2.4e-08 65.1 348 20.4
BraA04t17961Z Brassica rapa HOM05D000305 ORTHO05D000065 2.4e-08 65.1 294 20.4
DCAR_026108 Daucus carota HOM05D002492 ORTHO05D002621 2.4e-08 65.1 180 28.3
DCAR_000131 Daucus carota HOM05D019742 ORTHO05D019081 3.1e-08 64.7 151 27.8
RcHm_v2.0_Chr2g0133331 Rosa chinensis HOM05D006849 ORTHO05D003348 3.1e-08 64.7 197 24.9
BcaNung04477 Brassica carinata HOM05D000313 ORTHO05D000065 4.0e-08 64.3 295 22.4
A03p36970 Brassica napus HOM05D000313 ORTHO05D000065 4.0e-08 64.3 266 19.9
BcaB02g07731 Brassica carinata HOM05D000305 ORTHO05D000065 5.2e-08 63.9 292 21.6
BcaB02g10695 Brassica carinata HOM05D000305 ORTHO05D000065 8.9e-08 63.2 287 21.6
COL.COLO4_08194 Corchorus olitorius HOM05D007876 ORTHO05D007430 8.9e-08 63.2 282 21.3
FAN16G1404 Fragaria x ananassa HOM05D006849 ORTHO05D003348 8.9e-08 63.2 196 23.0
Duzib160G0267 Durio zibethinus HOM05D002907 ORTHO05D000065 1.2e-07 62.8 240 25.0
Sp1g32220 Schrenkiella parvula HOM05D000305 ORTHO05D000065 1.2e-07 62.8 189 25.9
BcaB01g02765 Brassica carinata HOM05D000305 ORTHO05D000065 1.5e-07 62.4 314 20.4
A04p24430 Brassica napus HOM05D000305 ORTHO05D000065 1.5e-07 62.4 275 20.0
C04p16800 Brassica napus HOM05D000305 ORTHO05D000065 1.5e-07 62.4 275 21.1
HanXRQChr05g0159821 Helianthus annuus HOM05D011053 ORTHO05D010547 1.5e-07 62.4 259 19.7
AL7G20110 Arabidopsis lyrata HOM05D000353 ORTHO05D000174 2.6e-07 61.6 158 25.3
DCAR_025689 Daucus carota HOM05D012849 ORTHO05D019081 2.6e-07 61.6 164 25.6
C08p15350 Brassica napus HOM05D000313 ORTHO05D000065 3.4e-07 61.2 284 23.6
DCAR_031592 Daucus carota HOM05D002907 ORTHO05D000065 3.4e-07 61.2 173 30.1
HanXRQChr04g0115711 Helianthus annuus HOM05D011053 ORTHO05D010547 3.4e-07 61.2 259 19.7
SGA_v2.0_scaffold53G19410 Striga asiatica HOM05D002090 ORTHO05D000174 3.4e-07 61.2 301 22.3
BolC4t24819H Brassica oleracea HOM05D000305 ORTHO05D000065 4.4e-07 60.8 272 21.3
RcHm_v2.0_Chr2g0133271 Rosa chinensis HOM05D006849 ORTHO05D003348 4.4e-07 60.8 150 26.7
BraA05t20038Z Brassica rapa HOM05D000305 ORTHO05D000065 5.8e-07 60.5 295 20.3
COL.COLO4_04315 Corchorus olitorius HOM05D010526 ORTHO05D007430 7.6e-07 60.1 196 25.5
DCAR_031299 Daucus carota HOM05D000001 ORTHO05D000003 7.6e-07 60.1 291 23.7
Zm00001eb193210 Zea mays HOM05D008312 ORTHO05D010433 7.6e-07 60.1 79 39.2
C09p59420 Brassica napus HOM05D000305 ORTHO05D000065 9.9e-07 59.7 284 21.5
BcaC06g34354 Brassica carinata HOM05D000305 ORTHO05D000065 1.3e-06 59.3 199 22.1
Zm00001eb159950 Zea mays HOM05D008312 ORTHO05D010433 1.3e-06 59.3 69 37.7
BcaC08g43905 Brassica carinata HOM05D000305 ORTHO05D000065 1.7e-06 58.9 300 20.3
Os02g0528500 Oryza sativa ssp. japonica HOM05D008312 ORTHO05D010433 2.2e-06 58.5 93 35.5
Zm00001eb360680 Zea mays HOM05D008312 ORTHO05D010433 2.9e-06 58.2 73 39.7
COL.COLO4_04314 Corchorus olitorius HOM05D010526 ORTHO05D007430 3.8e-06 57.8 194 26.8
C07p30440 Brassica napus HOM05D000305 ORTHO05D000065 6.4e-06 57.0 274 20.1
Zm00001eb104450 Zea mays HOM05D008312 ORTHO05D010433 6.4e-06 57.0 79 38.0
Zm00001eb123030 Zea mays HOM05D008312 ORTHO05D010433 6.4e-06 57.0 79 38.0
COL.COLO4_06467 Corchorus olitorius HOM05D007876 ORTHO05D007430 8.4e-06 56.6 191 23.6


User provided reference genes

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