Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb084940 Zea mays HOM05D003399 ORTHO05D003393 2.8e-177 625.2 321 100.0
Os04g0396500 Oryza sativa ssp. japonica HOM05D003399 ORTHO05D003393 3.5e-50 203.0 258 51.2
MBI07_g40352_MAGBIO Magnolia biondii HOM05D003399 ORTHO05D003393 1.4e-22 111.3 164 40.9
Potri.001G062700 Populus trichocarpa HOM05D003399 ORTHO05D003393 2.0e-21 107.5 158 42.4
Nn3g16314 Nelumbo nucifera HOM05D003399 ORTHO05D003393 3.4e-21 106.7 204 40.2
TWI18G1150 Tripterygium wilfordii HOM05D003399 ORTHO05D003393 5.8e-21 105.9 122 50.0
QL03p050027 Quercus lobata HOM05D003399 ORTHO05D003393 1.3e-20 104.8 155 43.9
RcHm_v2.0_Chr4g0429231 Rosa chinensis HOM05D003399 ORTHO05D003393 1.7e-20 104.4 158 44.3
EL10Ac6g13590 Beta vulgaris HOM05D003399 ORTHO05D003393 2.9e-20 103.6 154 43.5
FvH4_4g22950 Fragaria vesca HOM05D003399 ORTHO05D003393 8.4e-20 102.1 136 47.1
FAN12G0769 Fragaria x ananassa HOM05D003399 ORTHO05D003393 1.1e-19 101.7 136 47.1
Nn4g22186 Nelumbo nucifera HOM05D003399 ORTHO05D003393 1.1e-19 101.7 176 40.3
Duzib248G1620 Durio zibethinus HOM05D003399 ORTHO05D003393 1.9e-19 100.9 149 42.3
FAN17G2315 Fragaria x ananassa HOM05D003399 ORTHO05D003393 1.9e-19 100.9 136 46.3
Prupe.1G218100 Prunus persica HOM05D003399 ORTHO05D003393 1.9e-19 100.9 127 46.5
Lj1g0015103 Lotus japonicus HOM05D003399 ORTHO05D003393 2.4e-19 100.5 239 36.8
Aqoxy3G01823 Aquilegia oxysepala HOM05D003399 ORTHO05D003393 9.3e-19 98.6 167 40.1
TWI36G0503 Tripterygium wilfordii HOM05D003399 ORTHO05D003393 9.3e-19 98.6 119 48.7
Eucgr.G01956 Eucalyptus grandis HOM05D003399 ORTHO05D003393 1.2e-18 98.2 155 41.3
Glyma.18G282500 Glycine max HOM05D003399 ORTHO05D003393 1.2e-18 98.2 208 37.5
TWI75G1177 Tripterygium wilfordii HOM05D003399 ORTHO05D003393 1.2e-18 98.2 273 34.4
PGR119G0713 Punica granatum HOM05D003399 ORTHO05D003393 2.1e-18 97.4 167 41.3
arahy.Tifrunner.gnm1.ann1.FX1Z4A Arachis hypogaea HOM05D003399 ORTHO05D003393 3.5e-18 96.7 156 41.0
arahy.Tifrunner.gnm1.ann1.ULYV8E Arachis hypogaea HOM05D003399 ORTHO05D003393 3.5e-18 96.7 156 41.0
Carub.0006s1142 Capsella rubella HOM05D003399 ORTHO05D003393 3.5e-18 96.7 208 35.1
Sopen01g005220 Solanum pennellii HOM05D003399 ORTHO05D003393 3.5e-18 96.7 141 41.1
Duzib052G0315 Durio zibethinus HOM05D003399 ORTHO05D003393 1.0e-17 95.1 149 38.9
Phvul.008G018800 Phaseolus vulgaris HOM05D003399 ORTHO05D003393 1.3e-17 94.7 242 33.9
Sed0023362 Sechium edule HOM05D003399 ORTHO05D003393 1.3e-17 94.7 140 42.1
HPP92_023020 Vanilla planifolia HOM05D003399 ORTHO05D003393 1.3e-17 94.7 271 36.2
Gorai.008G156200 Gossypium raimondii HOM05D003399 ORTHO05D003393 1.7e-17 94.4 140 40.7
Lalb_Chr10g0092161 Lupinus albus HOM05D003399 ORTHO05D003393 1.7e-17 94.4 131 42.0
Gohir.D12G144800 Gossypium hirsutum HOM05D003399 ORTHO05D003393 2.3e-17 94.0 141 40.4
HanXRQChr08g0210071 Helianthus annuus HOM05D003399 ORTHO05D003393 2.3e-17 94.0 123 48.8
Oeu019432.1 Olea europaea HOM05D003399 ORTHO05D003393 2.3e-17 94.0 121 43.8
Oeu044505.1 Olea europaea HOM05D003399 ORTHO05D003393 2.3e-17 94.0 164 41.5
GSVIVG01000970001 Vitis vinifera HOM05D003399 ORTHO05D003393 2.3e-17 94.0 112 47.3
Atru.chr11.2413 Acer truncatum HOM05D003399 ORTHO05D003393 3.0e-17 93.6 122 45.1
Dinv12132 Davidia involucrata HOM05D003399 ORTHO05D003393 3.0e-17 93.6 264 33.7
Psat3g189760 Pisum sativum HOM05D003399 ORTHO05D003393 3.0e-17 93.6 129 45.0
Potri.003G164800 Populus trichocarpa HOM05D003399 ORTHO05D003393 3.0e-17 93.6 160 39.4
HPP92_023093 Vanilla planifolia HOM05D003399 ORTHO05D003393 3.0e-17 93.6 271 35.8
Duzib132G1194 Durio zibethinus HOM05D003399 ORTHO05D003393 3.9e-17 93.2 160 40.0
HanXRQChr12g0362291 Helianthus annuus HOM05D003399 ORTHO05D003393 3.9e-17 93.2 123 47.2
MD13G1127900 Malus domestica HOM05D003399 ORTHO05D003393 3.9e-17 93.2 230 34.3
PSO017G5218 Papaver somniferum HOM05D003399 ORTHO05D003393 3.9e-17 93.2 120 44.2
PSO478G0797 Papaver somniferum HOM05D003399 ORTHO05D003393 3.9e-17 93.2 120 44.2
SalBow7G1980 Salvia bowleyana HOM05D003399 ORTHO05D003393 3.9e-17 93.2 203 38.9
TAR622G1322 Trochodendron aralioides HOM05D003399 ORTHO05D003393 5.1e-17 92.8 277 33.9
Glyma.08G258100 Glycine max HOM05D003399 ORTHO05D003393 6.6e-17 92.4 207 36.2
Manes.08G102600 Manihot esculenta HOM05D003399 ORTHO05D003393 6.6e-17 92.4 157 39.5
THA.LOC104807363 Tarenaya hassleriana HOM05D003399 ORTHO05D003393 6.6e-17 92.4 212 33.5
BraA08t34543Z Brassica rapa HOM05D003399 ORTHO05D003393 1.1e-16 91.7 169 37.3
Gohir.D02G174700 Gossypium hirsutum HOM05D003399 ORTHO05D003393 1.1e-16 91.7 120 44.2
Actinidia34007 Actinidia chinensis HOM05D003399 ORTHO05D003393 1.5e-16 91.3 111 46.8
Lsat_1_v5_gn_4_1321 Lactuca sativa HOM05D003399 ORTHO05D003393 1.5e-16 91.3 160 41.9
Sp1g24260 Schrenkiella parvula HOM05D003399 ORTHO05D003393 1.5e-16 91.3 132 40.9
Gorai.005G196300 Gossypium raimondii HOM05D003399 ORTHO05D003393 1.9e-16 90.9 120 44.2
Sabra03G0119900 Salix brachista HOM05D003399 ORTHO05D003393 1.9e-16 90.9 159 38.4
Sed0004087 Sechium edule HOM05D003399 ORTHO05D003393 1.9e-16 90.9 214 31.3
MD16G1128300 Malus domestica HOM05D003399 ORTHO05D003393 2.5e-16 90.5 221 33.9
TAR374G0208 Trochodendron aralioides HOM05D003399 ORTHO05D003393 2.5e-16 90.5 276 33.7
BcaC05g26625 Brassica carinata HOM05D003399 ORTHO05D003393 3.3e-16 90.1 128 41.4
C05p26750 Brassica napus HOM05D003399 ORTHO05D003393 3.3e-16 90.1 128 41.4
CiPaw.05G103400 Carya illinoinensis HOM05D003399 ORTHO05D003393 3.3e-16 90.1 156 41.0
CsaV3_6G007830 Cucumis sativus L. HOM05D003399 ORTHO05D003393 3.3e-16 90.1 125 40.8
Gohir.A03G151600 Gossypium hirsutum HOM05D003399 ORTHO05D003393 3.3e-16 90.1 121 43.8
THA.LOC104825469 Tarenaya hassleriana HOM05D003399 ORTHO05D003393 3.3e-16 90.1 159 39.6
C03p74730 Brassica napus HOM05D003399 ORTHO05D003393 4.3e-16 89.7 132 40.2
Migut.K01039 Erythranthe guttata HOM05D003399 ORTHO05D003393 4.3e-16 89.7 129 39.5
Gohir.A12G140200 Gossypium hirsutum HOM05D003399 ORTHO05D003393 4.3e-16 89.7 141 39.0
Sc11g0000180 Simmondsia chinensis HOM05D003399 ORTHO05D003393 5.6e-16 89.4 120 43.3
Actinidia22126 Actinidia chinensis HOM05D003399 ORTHO05D003393 9.6e-16 88.6 266 33.8
Lalb_Chr04g0258081 Lupinus albus HOM05D003399 ORTHO05D003393 9.6e-16 88.6 168 36.3
C07p17320 Brassica napus HOM05D003399 ORTHO05D003393 1.3e-15 88.2 132 39.4
BolC7t42236H Brassica oleracea HOM05D003399 ORTHO05D003393 1.3e-15 88.2 132 39.4
Sp6g30740 Schrenkiella parvula HOM05D003399 ORTHO05D003393 1.3e-15 88.2 208 34.6
MSTRG.465 Avicennia marina HOM05D003399 ORTHO05D003393 1.6e-15 87.8 128 40.6
CARHR200200 Cardamine hirsuta HOM05D003399 ORTHO05D003393 1.6e-15 87.8 207 34.3
Gohir.D04G140300 Gossypium hirsutum HOM05D003399 ORTHO05D003393 1.6e-15 87.8 161 37.9
ECA233G3644 Erigeron canadensis HOM05D003399 ORTHO05D003393 2.8e-15 87.0 123 44.7
ClCG06G001790 Citrullus lanatus HOM05D003399 ORTHO05D003393 4.8e-15 86.3 128 39.1
Carub.0001s2651 Capsella rubella HOM05D003399 ORTHO05D003393 6.2e-15 85.9 258 30.6
Oeu003275.1 Olea europaea HOM05D003399 ORTHO05D003393 6.2e-15 85.9 127 41.7
Eucgr.B03547 Eucalyptus grandis HOM05D003399 ORTHO05D003393 8.1e-15 85.5 158 39.2
HPP92_020103 Vanilla planifolia HOM05D003399 ORTHO05D003393 8.1e-15 85.5 262 32.8
Oeu055475.1 Olea europaea HOM05D003399 ORTHO05D003393 1.4e-14 84.7 241 31.5
TAR629G1336 Trochodendron aralioides HOM05D003399 ORTHO05D003393 1.4e-14 84.7 179 36.9
HPP92_007019 Vanilla planifolia HOM05D001069 ORTHO05D003393 1.4e-14 84.7 212 34.0
C02p06020 Brassica napus HOM05D003399 ORTHO05D003393 1.8e-14 84.3 128 43.8
BolC2t06544H Brassica oleracea HOM05D003399 ORTHO05D003393 1.8e-14 84.3 128 43.8
AT5G13250 Arabidopsis thaliana HOM05D003399 ORTHO05D003393 2.4e-14 84.0 194 34.5
A10p24960 Brassica napus HOM05D003399 ORTHO05D003393 4.0e-14 83.2 212 34.0
BraA10t44558Z Brassica rapa HOM05D003399 ORTHO05D003393 4.0e-14 83.2 212 34.0
MELO3C022349.2 Cucumis melo HOM05D003399 ORTHO05D003393 4.0e-14 83.2 191 34.0
THA.LOC104820532 Tarenaya hassleriana HOM05D003399 ORTHO05D003393 4.0e-14 83.2 170 36.5
unitig_22.g6383 Utricularia gibba HOM05D003399 ORTHO05D003393 4.0e-14 83.2 120 39.2
Actinidia30598 Actinidia chinensis HOM05D003399 ORTHO05D003393 5.3e-14 82.8 93 46.2
A09p38010 Brassica napus HOM05D003399 ORTHO05D003393 5.3e-14 82.8 269 30.1
C03p06820 Brassica napus HOM05D003399 ORTHO05D003393 5.3e-14 82.8 168 37.5
BolC3t13193H Brassica oleracea HOM05D003399 ORTHO05D003393 5.3e-14 82.8 168 37.5
BraA09t39311Z Brassica rapa HOM05D003399 ORTHO05D003393 5.3e-14 82.8 269 30.1
A03p05900 Brassica napus HOM05D003399 ORTHO05D003393 6.9e-14 82.4 168 36.9
BraA03t09928Z Brassica rapa HOM05D003399 ORTHO05D003393 6.9e-14 82.4 168 36.9
Gorai.012G125300 Gossypium raimondii HOM05D003399 ORTHO05D003393 9.0e-14 82.0 159 39.0
CiPaw.06G108000 Carya illinoinensis HOM05D003399 ORTHO05D003393 1.2e-13 81.6 125 40.8
MELO3C017803.2 Cucumis melo HOM05D003399 ORTHO05D003393 1.2e-13 81.6 273 26.7
SalBow2G2541 Salvia bowleyana HOM05D003399 ORTHO05D003393 1.2e-13 81.6 84 48.8
C09p63830 Brassica napus HOM05D003399 ORTHO05D003393 1.5e-13 81.3 183 35.0
CANSAT01G0203 Cannabis sativa HOM05D003399 ORTHO05D003393 1.5e-13 81.3 120 41.7
MBI11_g08161_MAGBIO Magnolia biondii HOM05D003399 ORTHO05D003393 1.5e-13 81.3 179 31.3
Aqoxy5G03202 Aquilegia oxysepala HOM05D003399 ORTHO05D003393 2.0e-13 80.9 276 31.5
BolC9t59223H Brassica oleracea HOM05D003399 ORTHO05D003393 3.4e-13 80.1 183 34.4
BraA02t05155Z Brassica rapa HOM05D003399 ORTHO05D003393 7.6e-13 79.0 168 35.1
HPP92_011746 Vanilla planifolia HOM05D001069 ORTHO05D003393 2.2e-12 77.4 183 33.3
THA.LOC104814204 Tarenaya hassleriana HOM05D003399 ORTHO05D003393 2.9e-12 77.0 169 33.1
Gohir.A04G101200 Gossypium hirsutum HOM05D003399 ORTHO05D003393 4.9e-12 76.3 166 35.5
SEGI_31650 Sequoiadendron giganteum HOM05D001069 ORTHO05D003393 1.4e-11 74.7 121 37.2
Pp3c5_26550 Physcomitrium patens HOM05D001069 ORTHO05D003393 1.9e-11 74.3 148 33.8
Pp3c6_4830 Physcomitrium patens HOM05D001069 ORTHO05D003393 1.9e-11 74.3 139 36.0
SEGI_20529 Sequoiadendron giganteum HOM05D001069 ORTHO05D003393 2.4e-11 73.9 125 36.0
Nitab4.5_0001487g0040 Nicotiana tabacum HOM05D001069 ORTHO05D003393 1.2e-10 71.6 109 36.7
SEGI_21998 Sequoiadendron giganteum HOM05D001069 ORTHO05D003393 1.6e-10 71.2 170 31.8
Sopen04g018700 Solanum pennellii HOM05D001069 ORTHO05D003393 1.6e-10 71.2 116 32.8
Zm00001eb363740 Zea mays HOM05D003399 ORTHO05D003393 1.6e-10 71.2 122 39.3
SEGI_35003 Sequoiadendron giganteum HOM05D001069 ORTHO05D003393 2.1e-10 70.9 130 36.9
Duzib187G1995 Durio zibethinus HOM05D001069 ORTHO05D003393 3.5e-10 70.1 109 35.8
Sc04g0010500 Simmondsia chinensis HOM05D003399 ORTHO05D003393 3.5e-10 70.1 119 36.1
Dinv18692 Davidia involucrata HOM05D001069 ORTHO05D003393 1.0e-09 68.6 116 31.9
Mapoly0016s0017 Marchantia polymorpha HOM05D001069 ORTHO05D003393 8.7e-09 65.5 125 38.4
ATR0582G082 Amborella trichopoda HOM05D003399 ORTHO05D003393 1.1e-08 65.1 240 29.2
DCAR_013181 Daucus carota HOM05D003399 ORTHO05D003393 1.1e-08 65.1 115 29.6
PSO017G1762 Papaver somniferum HOM05D003399 ORTHO05D003393 1.1e-08 65.1 89 43.8
Gohir.D10G110300 Gossypium hirsutum HOM05D001069 ORTHO05D003393 2.5e-08 63.9 118 33.9
Gorai.011G121600 Gossypium raimondii HOM05D001069 ORTHO05D003393 2.5e-08 63.9 118 33.9
Gohir.A10G156466 Gossypium hirsutum HOM05D001069 ORTHO05D003393 3.3e-08 63.5 119 33.6
Actinidia19948 Actinidia chinensis HOM05D001069 ORTHO05D003393 9.6e-08 62.0 112 32.1
GSVIVG01018105001 Vitis vinifera HOM05D001069 ORTHO05D001549 9.6e-08 62.0 108 35.2
PSO478G0221 Papaver somniferum HOM05D003399 ORTHO05D003393 1.6e-07 61.2 175 33.7
SMO118G0230 Selaginella moellendorffii HOM05D001069 ORTHO05D001549 2.1e-07 60.8 112 35.7
Mapoly0003s0275 Marchantia polymorpha HOM05D001069 ORTHO05D001549 2.8e-07 60.5 109 39.4
A10p05340 Brassica napus HOM05D001069 ORTHO05D001549 1.1e-06 58.5 91 36.3
Cpa.g.sc632.1 Carica papaya HOM05D003399 ORTHO05D003393 1.1e-06 58.5 117 31.6
DCAR_027271 Daucus carota HOM05D001069 ORTHO05D001549 1.1e-06 58.5 111 36.9
BraA10t42798Z Brassica rapa HOM05D001069 ORTHO05D001549 1.4e-06 58.2 91 36.3
Thhalv10009364m.g Eutrema salsugineum HOM05D003399 ORTHO05D003393 1.4e-06 58.2 82 36.6
SMO146G0324 Selaginella moellendorffii HOM05D001069 ORTHO05D003393 1.4e-06 58.2 49 57.1
BcaC05g26811 Brassica carinata HOM05D003399 ORTHO05D003393 1.8e-06 57.8 56 48.2
Nn5g27649 Nelumbo nucifera HOM05D001069 ORTHO05D003393 1.8e-06 57.8 105 32.4
TPR.G2909 Trifolium pratense HOM05D003399 ORTHO05D003393 1.8e-06 57.8 296 26.7
A08p25910 Brassica napus HOM05D003399 ORTHO05D003393 2.4e-06 57.4 60 45.0
Glyma.20G225400 Glycine max HOM05D001069 ORTHO05D001549 2.4e-06 57.4 92 33.7
Gohir.A11G249000 Gossypium hirsutum HOM05D001069 ORTHO05D001549 2.4e-06 57.4 91 34.1
PGR142G3379 Punica granatum HOM05D001069 ORTHO05D001549 2.4e-06 57.4 108 32.4
AL1G41600 Arabidopsis lyrata HOM05D003399 ORTHO05D003393 5.3e-06 56.2 58 46.6
Duzib177G1087 Durio zibethinus HOM05D001069 ORTHO05D001549 6.9e-06 55.8 91 33.0


User provided reference genes

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