Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb083170 Zea mays HOM05D006715 ORTHO05D008345 0.0e+00 1297.3 640 100.0
Os04g0423600 Oryza sativa ssp. japonica HOM05D006715 ORTHO05D008345 8.9e-231 803.9 643 65.2
Aqoxy5G00857 Aquilegia oxysepala HOM05D006715 ORTHO05D008345 7.1e-95 352.4 664 37.5
Nn5g28769 Nelumbo nucifera HOM05D006715 ORTHO05D008345 3.9e-93 346.7 706 35.8
TAR381G1273 Trochodendron aralioides HOM05D006715 ORTHO05D008345 3.8e-88 330.1 707 35.1
PSO675G4790 Papaver somniferum HOM05D006715 ORTHO05D008345 8.4e-88 328.9 679 36.4
Actinidia17784 Actinidia chinensis HOM05D006715 ORTHO05D008345 4.2e-87 326.6 678 35.7
Cfa018312 Carpinus fangiana HOM05D006715 ORTHO05D008345 1.2e-86 325.1 668 36.2
TWI34G0194 Tripterygium wilfordii HOM05D006715 ORTHO05D008345 3.5e-86 323.6 716 33.4
CDE12G0089 Ceratophyllum demersum HOM05D006715 ORTHO05D008345 1.8e-85 321.2 659 35.8
CiPaw.16G011000 Carya illinoinensis HOM05D006715 ORTHO05D008345 1.5e-84 318.2 633 36.3
PGR042G1662 Punica granatum HOM05D006715 ORTHO05D008345 4.3e-84 316.6 651 36.4
RcHm_v2.0_Chr6g0275051 Rosa chinensis HOM05D006715 ORTHO05D008345 6.2e-83 312.8 678 34.7
Manes.02G180601 Manihot esculenta HOM05D006715 ORTHO05D008345 3.1e-82 310.5 673 34.3
MD05G1027900 Malus domestica HOM05D006715 ORTHO05D008345 8.4e-80 302.4 673 34.2
CANSAT25G3857 Cannabis sativa HOM05D006715 ORTHO05D008345 1.9e-79 301.2 700 31.9
Phvul.004G094200 Phaseolus vulgaris HOM05D006715 ORTHO05D008345 1.6e-78 298.1 654 34.1
Duzib093G1010 Durio zibethinus HOM05D006715 ORTHO05D008345 2.1e-78 297.7 685 32.0
ClCG08G002210 Citrullus lanatus HOM05D006715 ORTHO05D008345 3.5e-78 297.0 684 32.7
QL09p013340 Quercus lobata HOM05D006715 ORTHO05D008345 1.3e-77 295.0 660 33.9
THA.LOC104804670 Tarenaya hassleriana HOM05D006715 ORTHO05D008345 1.3e-77 295.0 652 34.0
Gorai.010G134600 Gossypium raimondii HOM05D006715 ORTHO05D008345 2.3e-77 294.3 661 33.3
Lj7A376T34 Lonicera japonica HOM05D006715 ORTHO05D008345 3.9e-77 293.5 684 34.5
Prupe.8G033600 Prunus persica HOM05D006715 ORTHO05D008345 3.9e-77 293.5 676 33.0
MELO3C025024.2 Cucumis melo HOM05D006715 ORTHO05D008345 6.7e-77 292.7 680 33.7
HPP92_009296 Vanilla planifolia HOM05D006715 ORTHO05D008345 6.7e-77 292.7 370 46.8
Cpa.g.sc1027.1 Carica papaya HOM05D006715 ORTHO05D008345 1.5e-76 291.6 663 34.2
VMungo0464G1764 Vigna mungo HOM05D006715 ORTHO05D008345 1.5e-76 291.6 677 32.9
arahy.Tifrunner.gnm1.ann1.6MC3QX Arachis hypogaea HOM05D006715 ORTHO05D008345 4.3e-76 290.0 701 33.1
Thecc.08G154500 Theobroma cacao HOM05D006715 ORTHO05D008345 5.7e-76 289.7 668 33.1
Psat1g102000 Pisum sativum HOM05D006715 ORTHO05D008345 2.1e-75 287.7 656 34.1
arahy.Tifrunner.gnm1.ann1.SG7PGU Arachis hypogaea HOM05D006715 ORTHO05D008345 1.8e-74 284.6 717 32.5
Eucgr.F02698 Eucalyptus grandis HOM05D006715 ORTHO05D008345 1.8e-74 284.6 666 33.3
SGA_v2.0_scaffold25G11186 Striga asiatica HOM05D006715 ORTHO05D008345 3.1e-74 283.9 665 35.2
Sopen04g027550 Solanum pennellii HOM05D006715 ORTHO05D008345 4.1e-74 283.5 690 32.3
Medtr2g045070 Medicago truncatula HOM05D006715 ORTHO05D008345 5.3e-74 283.1 673 32.4
Thhalv10003905m.g Eutrema salsugineum HOM05D006715 ORTHO05D008345 6.9e-74 282.7 650 32.3
Gohir.A06G112504 Gossypium hirsutum HOM05D006715 ORTHO05D008345 1.2e-73 282.0 650 33.2
FvH4_2g13430 Fragaria vesca HOM05D006715 ORTHO05D008345 1.5e-73 281.6 671 33.4
FAN24G1213 Fragaria x ananassa HOM05D006715 ORTHO05D008345 2.0e-73 281.2 671 32.8
Migut.N03207 Erythranthe guttata HOM05D006715 ORTHO05D008345 3.4e-73 280.4 668 31.4
Lj2g0009741 Lotus japonicus HOM05D006715 ORTHO05D008345 3.4e-73 280.4 677 32.5
Aa31LG6G9940 Aethionema arabicum HOM05D006715 ORTHO05D008345 5.9e-73 279.6 668 33.2
Potri.005G193500 Populus trichocarpa HOM05D006715 ORTHO05D008345 5.9e-73 279.6 670 33.0
Ciclev10000601m.g Citrus clementina HOM05D006715 ORTHO05D008345 8.4e-72 275.8 663 32.9
Sp1g32410 Schrenkiella parvula HOM05D006715 ORTHO05D008345 8.4e-72 275.8 638 33.4
Nitab4.5_0001187g0100 Nicotiana tabacum HOM05D006715 ORTHO05D008345 1.2e-70 271.9 679 33.4
Peaxi162Scf00599g00121 Petunia axillaris HOM05D006715 ORTHO05D008345 1.2e-70 271.9 632 33.4
CAN.G1215.10 Capsicum annuum HOM05D006715 ORTHO05D008345 4.6e-70 270.0 681 32.2
Sed0009104 Sechium edule HOM05D006715 ORTHO05D008345 1.3e-69 268.5 684 31.7
AT1G43245 Arabidopsis thaliana HOM05D006715 ORTHO05D008345 1.8e-69 268.1 642 32.2
Hund26691 Selenicereus undatus HOM05D006715 ORTHO05D008345 1.8e-69 268.1 677 32.2
BcaC04g24108 Brassica carinata HOM05D006715 ORTHO05D008345 5.1e-69 266.5 634 32.8
ATR0820G173 Amborella trichopoda HOM05D006715 ORTHO05D008345 8.7e-69 265.8 679 32.8
AL1G51600 Arabidopsis lyrata HOM05D006715 ORTHO05D008345 1.9e-68 264.6 643 31.6
COL.COLO4_29857 Corchorus olitorius HOM05D006715 ORTHO05D008345 5.7e-68 263.1 510 35.3
RcHm_v2.0_Chr5g0050861 Rosa chinensis HOM05D006715 ORTHO05D008345 3.7e-67 260.4 524 34.9
Lsat_1_v5_gn_9_41180 Lactuca sativa HOM05D006715 ORTHO05D008345 1.1e-66 258.8 571 34.9
GSVIVG01034549001 Vitis vinifera HOM05D006715 ORTHO05D008345 1.4e-66 258.5 509 34.4
BcaB01g02294 Brassica carinata HOM05D006715 ORTHO05D008345 3.1e-66 257.3 621 32.7
Rhsim05G0181200 Rhododendron simsii HOM05D006715 ORTHO05D008345 1.5e-65 255.0 572 33.9
vmacro20039 Vaccinium macrocarpon HOM05D006715 ORTHO05D008345 5.9e-65 253.1 516 32.9
MSTRG.24217 Avicennia marina HOM05D006715 ORTHO05D008345 1.3e-64 251.9 731 29.1
TPR.G23114 Trifolium pratense HOM05D006715 ORTHO05D008345 8.5e-64 249.2 489 33.1
ECA232G1953 Erigeron canadensis HOM05D006715 ORTHO05D008345 2.1e-62 244.6 626 31.5
FAN27G2814 Fragaria x ananassa HOM05D006715 ORTHO05D008345 4.6e-62 243.4 501 35.9
CsaV3_6G002600 Cucumis sativus L. HOM05D006715 ORTHO05D008345 6.1e-62 243.0 507 35.5
BolC9t53031H Brassica oleracea HOM05D006715 ORTHO05D008345 7.9e-62 242.7 534 33.7
Glyma.16G166500 Glycine max HOM05D006715 ORTHO05D008345 3.9e-61 240.4 670 31.8
Gohir.D06G116900 Gossypium hirsutum HOM05D006715 ORTHO05D008345 2.0e-60 238.0 460 35.2
C09p00980 Brassica napus HOM05D006715 ORTHO05D008345 3.3e-60 237.3 473 34.2
A09p00880 Brassica napus HOM05D006715 ORTHO05D008345 9.7e-60 235.7 477 35.6
BraA09t35760Z Brassica rapa HOM05D006715 ORTHO05D008345 9.7e-60 235.7 477 35.4
Atru.chr13.2084 Acer truncatum HOM05D006715 ORTHO05D008345 2.8e-59 234.2 557 32.3
MBI17_g41095_MAGBIO Magnolia biondii HOM05D006715 ORTHO05D008345 9.1e-58 229.2 363 39.9
HanXRQChr11g0320291 Helianthus annuus HOM05D006715 ORTHO05D008345 2.6e-57 227.6 595 31.8
unitig_21.g20147 Utricularia gibba HOM05D006715 ORTHO05D008345 1.0e-56 225.7 658 30.5
DCAR_010095 Daucus carota HOM05D006715 ORTHO05D008345 6.5e-56 223.0 487 32.4
SalBow6G6609 Salvia bowleyana HOM05D006715 ORTHO05D008345 2.5e-55 221.1 650 30.6
Haze_17767 Corylus avellana HOM05D006715 ORTHO05D008345 7.2e-55 219.5 394 36.8
Ca_26954_v3 Cicer arietinum L. HOM05D006715 ORTHO05D008345 9.7e-52 209.1 505 33.5
Dinv41067 Davidia involucrata HOM05D006715 ORTHO05D008345 2.6e-49 201.1 333 39.0
EL10Ac1g01568 Beta vulgaris HOM05D006715 ORTHO05D008345 1.7e-48 198.4 658 30.4
CARHR035370 Cardamine hirsuta HOM05D006715 ORTHO05D008345 1.8e-45 188.3 447 32.4
PGSC0003DMG400024094 Solanum tuberosum HOM05D006715 ORTHO05D008345 2.6e-44 184.5 386 32.9
SEGI_11470 Sequoiadendron giganteum HOM05D006715 ORTHO05D008345 3.7e-43 180.6 354 35.9
SHI09071 Sapria himalayana HOM05D006715 ORTHO05D008345 4.8e-43 180.3 735 26.1
AUR62026687 Chenopodium quinoa HOM05D006715 ORTHO05D008345 2.0e-41 174.9 315 37.1
Nitab4.5_0002764g0020 Nicotiana tabacum HOM05D006715 ORTHO05D008345 6.3e-35 153.3 363 32.2
Carub.0001s3453 Capsella rubella HOM05D006715 ORTHO05D008345 8.3e-35 152.9 344 34.0
Lj2g0026984 Lotus japonicus HOM05D006715 ORTHO05D008345 2.4e-34 151.4 201 45.3
Cc10_g14930 Coffea canephora HOM05D006715 ORTHO05D008345 9.1e-34 149.4 347 35.2
Sc02g0003950 Simmondsia chinensis HOM05D006715 ORTHO05D008345 1.6e-30 138.7 218 36.7
Lalb_Chr01g0009561 Lupinus albus HOM05D006715 ORTHO05D008345 2.7e-30 137.9 307 35.2
Lalb_Chr01g0009551 Lupinus albus HOM05D006715 ORTHO05D008345 8.0e-30 136.3 152 46.7
AUR62040600 Chenopodium quinoa HOM05D006715 ORTHO05D008345 4.0e-29 134.0 284 33.8
Glyma.16G166267 Glycine max HOM05D006715 ORTHO05D008345 1.2e-28 132.5 153 47.1
SEGI_20433 Sequoiadendron giganteum HOM05D006715 ORTHO05D008345 9.2e-26 122.9 259 36.7
SEGI_34185 Sequoiadendron giganteum HOM05D006715 ORTHO05D008345 3.5e-25 120.9 193 35.8
Oeu031098.1 Olea europaea HOM05D006715 ORTHO05D008345 1.7e-24 118.6 378 29.4
CSS0020422 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 6.6e-24 116.7 233 33.5
HPP92_009297 Vanilla planifolia HOM05D006715 ORTHO05D008345 3.3e-23 114.4 272 31.6
Glyma.16G166333 Glycine max HOM05D006715 ORTHO05D008345 1.5e-20 105.5 259 31.7
TAR381G1110 Trochodendron aralioides HOM05D006715 ORTHO05D008345 5.7e-20 103.6 275 32.0
Potri.005G193701 Populus trichocarpa HOM05D006715 ORTHO05D008345 9.8e-20 102.8 308 28.2
Carub.0001s3454 Capsella rubella HOM05D006715 ORTHO05D008345 2.9e-19 101.3 229 33.2
CSS0046539 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 8.3e-19 99.8 124 43.5
CSS0028068 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 4.1e-18 97.4 214 32.2
MCO04G092 Micromonas commoda HOM05D004492 ORTHO05D005602 1.7e-08 65.5 321 26.2
Thecc.08G119000 Theobroma cacao HOM05D004492 ORTHO05D005602 3.0e-08 64.7 49 59.2
Medtr3g062560 Medicago truncatula HOM05D006715 ORTHO05D008345 6.6e-08 63.5 127 37.0
Thecc.08G119200 Theobroma cacao HOM05D004492 ORTHO05D005602 5.6e-07 60.5 287 23.7
MCO09G489 Micromonas commoda HOM05D006715 ORTHO05D008345 7.3e-07 60.1 356 22.8
Ca_25111_v3 Cicer arietinum L. HOM05D006673 ORTHO05D008458 2.8e-06 58.2 345 23.8
Thecc.08G118900 Theobroma cacao HOM05D004492 ORTHO05D005602 3.6e-06 57.8 287 24.7
Thecc.08G119300 Theobroma cacao HOM05D004492 ORTHO05D005602 3.6e-06 57.8 49 53.1
Thecc.08G119400 Theobroma cacao HOM05D004492 ORTHO05D005602 3.6e-06 57.8 49 51.0
CSS0020713 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 6.2e-06 57.0 123 30.9


User provided reference genes

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