Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 2.7e-109 398.7 197 100.0
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 6.2e-90 334.3 197 81.2
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 6.9e-65 251.1 198 59.1
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 9.0e-65 250.8 198 58.6
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 9.0e-65 250.8 198 60.1
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 3.4e-64 248.8 198 59.1
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 5.8e-64 248.1 198 57.6
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 9.9e-64 247.3 198 57.1
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 9.9e-64 247.3 198 57.6
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 9.9e-64 247.3 198 58.6
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 1.7e-63 246.5 198 57.6
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 2.2e-63 246.1 198 58.1
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 2.9e-63 245.7 198 57.1
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 8.4e-63 244.2 198 56.6
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 1.9e-62 243.0 198 58.6
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 2.4e-62 242.7 198 55.6
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 3.2e-62 242.3 198 57.1
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 3.2e-62 242.3 198 55.1
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 4.2e-62 241.9 198 56.1
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 4.2e-62 241.9 198 57.1
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 5.4e-62 241.5 198 56.1
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 9.3e-62 240.7 198 56.1
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 9.3e-62 240.7 198 56.1
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 2.1e-61 239.6 198 55.6
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 2.7e-61 239.2 198 55.6
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 2.7e-61 239.2 198 56.1
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 3.5e-61 238.8 198 55.6
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 6.0e-61 238.0 198 54.5
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 6.0e-61 238.0 198 54.5
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 1.3e-60 236.9 198 55.1
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 1.3e-60 236.9 198 55.6
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 1.7e-60 236.5 198 54.5
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 3.9e-60 235.3 198 54.5
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 5.1e-60 235.0 200 56.0
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 6.6e-60 234.6 198 53.0
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 6.6e-60 234.6 198 55.1
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 8.7e-60 234.2 198 55.6
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 1.1e-59 233.8 198 53.5
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 1.1e-59 233.8 198 53.5
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 1.5e-59 233.4 198 55.6
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 1.5e-59 233.4 198 56.6
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 1.5e-59 233.4 198 54.5
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 1.9e-59 233.0 198 54.0
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 1.9e-59 233.0 198 54.0
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 1.9e-59 233.0 198 54.5
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 1.9e-59 233.0 198 55.6
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 1.9e-59 233.0 198 54.5
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 3.3e-59 232.3 199 54.3
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 5.6e-59 231.5 198 53.0
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 5.6e-59 231.5 198 53.5
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 7.3e-59 231.1 198 53.5
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 1.3e-58 230.3 198 53.0
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 1.3e-58 230.3 198 53.0
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 1.3e-58 230.3 198 55.1
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 1.3e-58 230.3 198 55.1
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 1.6e-58 229.9 198 55.6
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 1.6e-58 229.9 198 54.0
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 2.1e-58 229.6 198 54.0
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 2.1e-58 229.6 198 52.5
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 2.1e-58 229.6 198 52.0
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 2.1e-58 229.6 241 47.7
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 2.8e-58 229.2 198 51.5
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 2.8e-58 229.2 198 53.5
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 3.6e-58 228.8 198 53.0
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 3.6e-58 228.8 198 54.5
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 4.8e-58 228.4 198 52.5
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 6.2e-58 228.0 198 53.5
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 6.2e-58 228.0 198 53.0
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 6.2e-58 228.0 198 53.0
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 6.2e-58 228.0 198 53.0
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 1.1e-57 227.3 198 54.5
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 1.4e-57 226.9 198 52.5
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 1.8e-57 226.5 198 52.5
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 1.8e-57 226.5 216 50.5
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 2.4e-57 226.1 233 50.2
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 9.0e-57 224.2 216 49.1
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 1.2e-56 223.8 219 48.9
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 1.2e-56 223.8 200 53.0
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 1.5e-56 223.4 198 53.0
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 1.5e-56 223.4 198 53.5
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 2.0e-56 223.0 198 53.0
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 3.4e-56 222.2 198 52.0
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 4.5e-56 221.9 199 54.3
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 7.6e-56 221.1 198 52.0
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 9.9e-56 220.7 198 52.5
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 4.9e-55 218.4 234 48.7
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 6.4e-55 218.0 234 47.9
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 1.4e-54 216.9 198 50.5
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 3.2e-54 215.7 197 49.2
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 9.3e-54 214.2 161 58.4
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 2.7e-53 212.6 198 49.0
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 4.6e-53 211.8 180 53.3
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 6.0e-53 211.5 161 60.2
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 6.0e-53 211.5 236 45.8
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 1.0e-52 210.7 173 55.5
Zm00001eb422450 Zea mays HOM05D004322 ORTHO05D005033 1.0e-52 210.7 142 74.6
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 1.3e-52 210.3 171 54.4
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 1.3e-52 210.3 173 56.1
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 8.7e-52 207.6 188 54.3
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.1e-51 207.2 206 48.5
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 1.5e-51 206.8 253 43.1
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.9e-51 206.5 206 47.1
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 5.6e-51 204.9 198 48.5
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 1.6e-50 203.4 198 50.0
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 2.4e-49 199.5 198 47.0
Lsat_1_v5_gn_9_116181 Lactuca sativa HOM05D004322 ORTHO05D005033 2.4e-49 199.5 190 52.1
Mapoly0036s0096 Marchantia polymorpha HOM05D004322 ORTHO05D005033 1.0e-47 194.1 196 48.5
SMO353G0429 Selaginella moellendorffii HOM05D004322 ORTHO05D005033 3.8e-47 192.2 198 42.9
Actinidia00226 Actinidia chinensis HOM05D004322 ORTHO05D005033 4.2e-46 188.7 198 49.5
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 2.7e-45 186.0 161 54.7
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 6.7e-44 181.4 155 51.6
Pp3c14_8990 Physcomitrium patens HOM05D004322 ORTHO05D005033 7.4e-43 177.9 197 44.7
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 1.1e-41 174.1 198 46.5
Prupe.1G186200 Prunus persica HOM05D004322 ORTHO05D005033 1.5e-40 170.2 160 48.1
BolC9t60208H Brassica oleracea HOM05D004322 ORTHO05D005033 2.0e-40 169.9 145 53.1
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 2.9e-39 166.0 135 56.3
CBR_g26281 Chara braunii HOM05D004322 ORTHO05D005033 3.8e-39 165.6 165 49.1
THA.LOC104809099 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 3.0e-36 156.0 152 46.7
CDE05G2724 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 2.5e-35 152.9 130 56.2
Lalb_Chr15g0090601 Lupinus albus HOM05D004322 ORTHO05D005033 3.1e-33 146.0 114 54.4
Psat1g219720 Pisum sativum HOM05D004322 ORTHO05D005033 2.6e-32 142.9 114 52.6
CBR_g4180 Chara braunii HOM05D004322 ORTHO05D005033 1.0e-31 141.0 143 49.7
Cc02_g22150 Coffea canephora HOM05D004322 ORTHO05D005033 6.5e-31 138.3 114 50.0
SEGI_09552 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 2.1e-29 133.3 113 48.7
SEGI_31940 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 3.6e-29 132.5 113 48.7
Thecc.07G026500 Theobroma cacao HOM05D004322 ORTHO05D005033 2.3e-28 129.8 185 38.9
Haze_01278 Corylus avellana HOM05D004322 ORTHO05D005033 6.7e-28 128.3 121 47.1
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 1.5e-27 127.1 114 49.1
SHI16603 Sapria himalayana HOM05D004322 ORTHO05D005033 3.3e-27 125.9 141 41.8
Cpa.g.sc157.24 Carica papaya HOM05D004322 ORTHO05D005033 3.7e-26 122.5 110 54.5
Medtr0153s0020 Medicago truncatula HOM05D004322 ORTHO05D005033 8.2e-26 121.3 98 52.0
Manes.10G133677 Manihot esculenta HOM05D004322 ORTHO05D005033 1.4e-20 104.0 77 64.9
Cc02_g22140 Coffea canephora HOM05D004322 ORTHO05D005033 2.3e-20 103.2 97 54.6
CAN.G1352.11 Capsicum annuum HOM05D004322 ORTHO05D005033 1.5e-19 100.5 123 44.7
Lalb_Chr15g0090591 Lupinus albus HOM05D004322 ORTHO05D005033 7.4e-19 98.2 77 63.6
CAN.G1352.10 Capsicum annuum HOM05D004322 ORTHO05D005033 2.2e-18 96.7 77 63.6
Sabra01G0160600 Salix brachista HOM05D004322 ORTHO05D005033 6.3e-18 95.1 77 62.3
SEGI_18567 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 8.2e-18 94.7 83 56.6
QL11p019123 Quercus lobata HOM05D004322 ORTHO05D005033 1.8e-17 93.6 77 58.4
Oeu044826.1 Olea europaea HOM05D004322 ORTHO05D005033 4.1e-17 92.4 77 59.7
Oeu044828.1 Olea europaea HOM05D004322 ORTHO05D005033 4.1e-17 92.4 77 59.7
Glyma.10G118567 Glycine max HOM05D004322 ORTHO05D005033 4.5e-16 89.0 71 59.2
Gohir.D08G183600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 4.5e-16 89.0 77 58.4
Potri.003G022001 Populus trichocarpa HOM05D004322 ORTHO05D005033 2.2e-15 86.7 77 55.8
Oeu012736.1 Olea europaea HOM05D004322 ORTHO05D005033 8.5e-15 84.7 72 58.3
MBI18_g28448_MAGBIO Magnolia biondii HOM05D004322 ORTHO05D005033 2.5e-14 83.2 59 52.5
Gohir.D12G215800 Gossypium hirsutum HOM05D004322 ORTHO05D005033 4.2e-14 82.4 75 54.7
Cre14.g608850 Chlamydomonas reinhardtii HOM05D004322 ORTHO05D005033 9.4e-14 81.3 119 36.1
Thecc.07G026400 Theobroma cacao HOM05D004322 ORTHO05D005033 5.2e-12 75.5 67 46.3
Medtr2g007855 Medicago truncatula HOM05D004322 ORTHO05D005033 9.7e-11 71.2 58 58.6
HPP92_016147 Vanilla planifolia HOM05D004322 ORTHO05D005033 6.3e-10 68.6 101 35.6
Medtr0153s0060 Medicago truncatula HOM05D004322 ORTHO05D005033 1.4e-09 67.4 145 34.5
Glyma.10G118633 Glycine max HOM05D004322 ORTHO05D005033 1.8e-09 67.0 55 50.9
SEGI_23686 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 4.1e-09 65.9 54 51.9
TPR.G19730 Trifolium pratense HOM05D004322 ORTHO05D005033 1.2e-08 64.3 48 52.1
Cpa.g.sc157.23 Carica papaya HOM05D004322 ORTHO05D005033 2.6e-08 63.2 55 50.9
BcaB04g18035 Brassica carinata HOM05D004322 ORTHO05D005033 3.5e-08 62.8 61 44.3
QL11p019127 Quercus lobata HOM05D004322 ORTHO05D005033 1.0e-07 61.2 63 50.8
BcaB07g33266 Brassica carinata HOM05D004322 ORTHO05D005033 1.1e-06 57.8 57 42.1
Lsat_1_v5_gn_9_65501 Lactuca sativa HOM05D001588 ORTHO05D002975 1.9e-06 57.0 55 47.3
Lsat_1_v5_gn_7_68880 Lactuca sativa HOM05D004322 ORTHO05D005033 7.2e-06 55.1 46 50.0


User provided reference genes

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