Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb082870 Zea mays HOM05D003103 ORTHO05D003999 8.0e-114 413.7 198 100.0
Os04g0429800 Oryza sativa ssp. japonica HOM05D003103 ORTHO05D003999 1.5e-107 392.9 198 93.9
Os03g0837300 Oryza sativa ssp. japonica HOM05D003103 ORTHO05D003999 1.4e-97 359.8 198 84.8
THA.LOC104819846 Tarenaya hassleriana HOM05D003103 ORTHO05D003999 2.3e-97 359.0 198 86.4
Sabra05G0111200 Salix brachista HOM05D003103 ORTHO05D003999 5.2e-97 357.8 196 85.2
Potri.005G139800 Populus trichocarpa HOM05D003103 ORTHO05D003999 8.9e-97 357.1 198 84.8
vmacro17957 Vaccinium macrocarpon HOM05D003103 ORTHO05D003999 8.9e-97 357.1 198 84.8
Rhsim08G0099700 Rhododendron simsii HOM05D003103 ORTHO05D003999 1.2e-96 356.7 198 84.8
Haze_15380 Corylus avellana HOM05D003103 ORTHO05D003999 1.5e-96 356.3 198 84.3
QL06p040980 Quercus lobata HOM05D003103 ORTHO05D003999 1.5e-96 356.3 195 85.1
Lalb_Chr05g0226491 Lupinus albus HOM05D003103 ORTHO05D003999 2.0e-96 355.9 198 85.4
Nn1g04803 Nelumbo nucifera HOM05D003103 ORTHO05D003999 2.0e-96 355.9 198 83.8
arahy.Tifrunner.gnm1.ann1.6SC4JI Arachis hypogaea HOM05D003103 ORTHO05D003999 2.6e-96 355.5 198 85.9
CARHR293030 Cardamine hirsuta HOM05D003103 ORTHO05D003999 2.6e-96 355.5 198 84.8
Potri.007G045400 Populus trichocarpa HOM05D003103 ORTHO05D003999 3.4e-96 355.1 198 83.8
Cpa.g.sc55.133 Carica papaya HOM05D003103 ORTHO05D003999 4.4e-96 354.8 196 85.7
Cfa004034 Carpinus fangiana HOM05D003103 ORTHO05D003999 4.4e-96 354.8 198 84.3
Actinidia16477 Actinidia chinensis HOM05D003103 ORTHO05D003999 5.8e-96 354.4 198 82.3
Carub.0004s0262 Capsella rubella HOM05D003103 ORTHO05D003999 5.8e-96 354.4 198 84.8
AL4G13330 Arabidopsis lyrata HOM05D003103 ORTHO05D003999 7.6e-96 354.0 198 84.3
CiPaw.01G016600 Carya illinoinensis HOM05D003103 ORTHO05D003999 7.6e-96 354.0 198 83.8
Nitab4.5_0003519g0020 Nicotiana tabacum HOM05D003103 ORTHO05D003999 7.6e-96 354.0 198 83.8
TAR381G0597 Trochodendron aralioides HOM05D003103 ORTHO05D003999 7.6e-96 354.0 198 83.8
Duzib264G0053 Durio zibethinus HOM05D003103 ORTHO05D003999 1.3e-95 353.2 196 84.7
Lj7A70T83 Lonicera japonica HOM05D003103 ORTHO05D003999 1.3e-95 353.2 198 84.3
A09p56930 Brassica napus HOM05D003103 ORTHO05D003999 2.2e-95 352.4 198 83.3
Eucgr.I00907 Eucalyptus grandis HOM05D003103 ORTHO05D003999 2.2e-95 352.4 196 84.2
Sp4g02410 Schrenkiella parvula HOM05D003103 ORTHO05D003999 2.2e-95 352.4 198 83.8
CSS0011350 Camellia sinensis var. sinensis HOM05D003103 ORTHO05D003999 2.9e-95 352.1 198 83.8
Lj4g0002336 Lotus japonicus HOM05D003103 ORTHO05D003999 2.9e-95 352.1 198 84.3
Sabra07G0040400 Salix brachista HOM05D003103 ORTHO05D003999 2.9e-95 352.1 196 83.7
TPR.G19077 Trifolium pratense HOM05D003103 ORTHO05D003999 2.9e-95 352.1 198 83.8
Ciclev10025298m.g Citrus clementina HOM05D003103 ORTHO05D003999 3.7e-95 351.7 198 83.8
AT2G23420 Arabidopsis thaliana HOM05D003103 ORTHO05D003999 4.9e-95 351.3 198 83.8
CAN.G370.47 Capsicum annuum HOM05D003103 ORTHO05D003999 4.9e-95 351.3 196 83.7
BraA09t41085Z Brassica rapa HOM05D003103 ORTHO05D003999 6.4e-95 350.9 198 82.8
Gohir.A12G072300 Gossypium hirsutum HOM05D003103 ORTHO05D003999 6.4e-95 350.9 198 82.8
PGSC0003DMG400004012 Solanum tuberosum HOM05D003103 ORTHO05D003999 6.4e-95 350.9 196 83.7
Aa31LG7G13580 Aethionema arabicum HOM05D003103 ORTHO05D003999 8.4e-95 350.5 198 84.8
Gorai.008G077200 Gossypium raimondii HOM05D003103 ORTHO05D003999 1.1e-94 350.1 198 82.8
GSVIVG01022112001 Vitis vinifera HOM05D003103 ORTHO05D003999 1.1e-94 350.1 198 83.3
Actinidia03793 Actinidia chinensis HOM05D003103 ORTHO05D003999 1.4e-94 349.7 198 82.3
Actinidia12044 Actinidia chinensis HOM05D003103 ORTHO05D003999 1.4e-94 349.7 198 82.8
BcaC07g40987 Brassica carinata HOM05D003103 ORTHO05D003999 1.4e-94 349.7 198 82.8
C08p39890 Brassica napus HOM05D003103 ORTHO05D003999 1.4e-94 349.7 198 82.8
BolC8t51562H Brassica oleracea HOM05D003103 ORTHO05D003999 1.4e-94 349.7 198 82.8
Glyma.05G094000 Glycine max HOM05D003103 ORTHO05D003999 1.4e-94 349.7 196 84.2
Sc03g0001680 Simmondsia chinensis HOM05D003103 ORTHO05D003999 1.4e-94 349.7 198 82.8
VMungo0251G1095 Vigna mungo HOM05D003103 ORTHO05D003999 1.9e-94 349.4 198 82.8
Atru.chr3.305 Acer truncatum HOM05D003103 ORTHO05D003999 2.4e-94 349.0 196 83.7
Thhalv10000109m.g Eutrema salsugineum HOM05D003103 ORTHO05D003999 2.4e-94 349.0 198 82.8
Gohir.D11G200400 Gossypium hirsutum HOM05D003103 ORTHO05D003999 2.4e-94 349.0 196 83.7
Nn5g30339 Nelumbo nucifera HOM05D003103 ORTHO05D003999 2.4e-94 349.0 198 82.3
Phvul.003G243000 Phaseolus vulgaris HOM05D003103 ORTHO05D003999 2.4e-94 349.0 198 83.3
Thecc.01G058700 Theobroma cacao HOM05D003103 ORTHO05D003999 2.4e-94 349.0 198 83.8
Gohir.D12G070200 Gossypium hirsutum HOM05D003103 ORTHO05D003999 3.2e-94 348.6 198 82.3
Lalb_Chr16g0388671 Lupinus albus HOM05D003103 ORTHO05D003999 3.2e-94 348.6 198 83.8
Sed0023462 Sechium edule HOM05D003103 ORTHO05D003999 3.2e-94 348.6 196 85.2
HanXRQChr12g0381311 Helianthus annuus HOM05D003103 ORTHO05D003999 4.1e-94 348.2 196 83.2
DCAR_010882 Daucus carota HOM05D003103 ORTHO05D003999 5.4e-94 347.8 196 84.2
Nitab4.5_0002029g0060 Nicotiana tabacum HOM05D003103 ORTHO05D003999 5.4e-94 347.8 198 82.8
TWI73G1128 Tripterygium wilfordii HOM05D003103 ORTHO05D003999 5.4e-94 347.8 198 82.3
Dinv30000 Davidia involucrata HOM05D003103 ORTHO05D003999 7.1e-94 347.4 196 83.2
Ca_22156_v3 Cicer arietinum L. HOM05D003103 ORTHO05D003999 9.2e-94 347.1 198 82.8
Gohir.A11G193300 Gossypium hirsutum HOM05D003103 ORTHO05D003999 9.2e-94 347.1 196 83.2
Zm00001eb422480 Zea mays HOM05D003103 ORTHO05D003999 9.2e-94 347.1 198 87.4
EL10Ac6g15729 Beta vulgaris HOM05D003103 ORTHO05D003999 1.2e-93 346.7 198 82.3
Oeu062450.1 Olea europaea HOM05D003103 ORTHO05D003999 1.2e-93 346.7 198 83.8
Solyc02g093290.3 Solanum lycopersicum HOM05D003103 ORTHO05D003999 1.2e-93 346.7 196 83.2
Solyc03g044430.3 Solanum lycopersicum HOM05D003103 ORTHO05D003999 1.2e-93 346.7 198 82.3
Sopen02g037850 Solanum pennellii HOM05D003103 ORTHO05D003999 1.2e-93 346.7 196 83.2
Ah.03g145520 Amaranthus hybridus HOM05D003103 ORTHO05D003999 1.6e-93 346.3 196 82.1
PGR102G2176 Punica granatum HOM05D003103 ORTHO05D003999 1.6e-93 346.3 198 82.8
MSTRG.3431 Avicennia marina HOM05D003103 ORTHO05D003999 2.1e-93 345.9 198 81.3
Duzib147G0775 Durio zibethinus HOM05D003103 ORTHO05D003999 2.1e-93 345.9 198 81.8
Sopen03g008560 Solanum pennellii HOM05D003103 ORTHO05D003999 2.1e-93 345.9 198 82.3
SGA_v2.0_scaffold15G07323 Striga asiatica HOM05D003103 ORTHO05D003999 2.1e-93 345.9 196 83.2
HPP92_009260 Vanilla planifolia HOM05D003103 ORTHO05D003999 2.1e-93 345.9 196 81.1
Cc07_g06120 Coffea canephora HOM05D003103 ORTHO05D003999 2.7e-93 345.5 196 82.7
PSO541G2306 Papaver somniferum HOM05D003103 ORTHO05D003999 2.7e-93 345.5 196 82.7
PSO675G0324 Papaver somniferum HOM05D003103 ORTHO05D003999 2.7e-93 345.5 196 82.7
arahy.Tifrunner.gnm1.ann1.N9FI25 Arachis hypogaea HOM05D003103 ORTHO05D003999 4.6e-93 344.7 198 84.3
arahy.Tifrunner.gnm1.ann1.TC99UD Arachis hypogaea HOM05D003103 ORTHO05D003999 4.6e-93 344.7 198 84.3
ECA246G4532 Erigeron canadensis HOM05D003103 ORTHO05D003999 6.0e-93 344.4 196 82.7
Gorai.007G214700 Gossypium raimondii HOM05D003103 ORTHO05D003999 6.0e-93 344.4 197 83.2
A03p64960 Brassica napus HOM05D003103 ORTHO05D003999 1.0e-92 343.6 198 81.8
C07p62250 Brassica napus HOM05D003103 ORTHO05D003999 1.0e-92 343.6 198 81.8
BolC7t46641H Brassica oleracea HOM05D003103 ORTHO05D003999 1.0e-92 343.6 198 81.8
BraA03t15555Z Brassica rapa HOM05D003103 ORTHO05D003999 1.0e-92 343.6 198 81.8
CANSAT01G0334 Cannabis sativa HOM05D003103 ORTHO05D003999 1.0e-92 343.6 198 82.3
ClCG02G012340 Citrullus lanatus HOM05D003103 ORTHO05D003999 1.0e-92 343.6 196 83.7
Glyma.17G172500 Glycine max HOM05D003103 ORTHO05D003999 1.0e-92 343.6 196 83.2
Peaxi162Scf00685g00413 Petunia axillaris HOM05D003103 ORTHO05D003999 1.0e-92 343.6 198 81.8
CAN.G11.2 Capsicum annuum HOM05D003103 ORTHO05D003999 1.3e-92 343.2 198 80.8
Oeu031966.1 Olea europaea HOM05D003103 ORTHO05D003999 1.3e-92 343.2 198 81.8
Hund13545 Selenicereus undatus HOM05D003103 ORTHO05D003999 1.3e-92 343.2 196 81.6
ATR0584G122 Amborella trichopoda HOM05D003103 ORTHO05D003999 1.7e-92 342.8 198 80.8
Aqoxy6G01280 Aquilegia oxysepala HOM05D003103 ORTHO05D003999 1.7e-92 342.8 198 81.3
Thhalv10024704m.g Eutrema salsugineum HOM05D003103 ORTHO05D003999 2.3e-92 342.4 198 81.3
Medtr4g094805 Medicago truncatula HOM05D003103 ORTHO05D003999 2.3e-92 342.4 198 81.3
CARHR245570 Cardamine hirsuta HOM05D003103 ORTHO05D003999 3.0e-92 342.0 198 80.8
Psat4g086400 Pisum sativum HOM05D003103 ORTHO05D003999 3.0e-92 342.0 198 81.3
AL7G13700 Arabidopsis lyrata HOM05D003103 ORTHO05D003999 3.9e-92 341.7 198 80.8
AT4G36940 Arabidopsis thaliana HOM05D003103 ORTHO05D003999 5.1e-92 341.3 198 80.3
MSTRG.15382 Avicennia marina HOM05D003103 ORTHO05D003999 6.6e-92 340.9 196 81.1
BcaNung05429 Brassica carinata HOM05D003103 ORTHO05D003999 6.6e-92 340.9 198 81.3
COL.COLO4_11442 Corchorus olitorius HOM05D003103 ORTHO05D003999 6.6e-92 340.9 196 81.6
MELO3C020858.2 Cucumis melo HOM05D003103 ORTHO05D003999 1.1e-91 340.1 196 83.7
CsaV3_2G016480 Cucumis sativus L. HOM05D003103 ORTHO05D003999 1.1e-91 340.1 196 83.7
Aa31LG6G14040 Aethionema arabicum HOM05D003103 ORTHO05D003999 1.5e-91 339.7 198 80.3
Carub.0007s0312 Capsella rubella HOM05D003103 ORTHO05D003999 1.5e-91 339.7 198 80.3
MD15G1285500 Malus domestica HOM05D003103 ORTHO05D003999 1.5e-91 339.7 196 81.1
Sed0020253 Sechium edule HOM05D003103 ORTHO05D003999 1.5e-91 339.7 196 83.2
Sp7g34830 Schrenkiella parvula HOM05D003103 ORTHO05D003999 2.5e-91 339.0 198 80.8
ECA238G1051 Erigeron canadensis HOM05D003103 ORTHO05D003999 3.3e-91 338.6 196 81.1
HanXRQChr07g0187961 Helianthus annuus HOM05D003103 ORTHO05D003999 4.3e-91 338.2 196 80.1
MD02G1174500 Malus domestica HOM05D003103 ORTHO05D003999 4.3e-91 338.2 196 80.6
SalBow5G1645 Salvia bowleyana HOM05D003103 ORTHO05D003999 5.6e-91 337.8 196 81.6
HanXRQChr14g0449051 Helianthus annuus HOM05D003103 ORTHO05D003999 7.3e-91 337.4 196 79.6
SalBow5G5600 Salvia bowleyana HOM05D003103 ORTHO05D003999 7.3e-91 337.4 196 81.1
Peaxi162Scf00450g00126 Petunia axillaris HOM05D003103 ORTHO05D003999 1.2e-90 336.7 208 77.4
TWI09G1566 Tripterygium wilfordii HOM05D003103 ORTHO05D003999 1.2e-90 336.7 198 79.3
Prupe.7G131500 Prunus persica HOM05D003103 ORTHO05D003999 2.8e-90 335.5 196 80.6
AUR62001914 Chenopodium quinoa HOM05D003103 ORTHO05D003999 3.6e-90 335.1 198 80.8
Ca_24758_v3 Cicer arietinum L. HOM05D003103 ORTHO05D003999 3.6e-90 335.1 198 81.3
arahy.Tifrunner.gnm1.ann1.Q9CK1R Arachis hypogaea HOM05D003103 ORTHO05D003999 2.4e-89 332.4 194 82.0
arahy.Tifrunner.gnm1.ann1.WH2MYH Arachis hypogaea HOM05D003103 ORTHO05D003999 2.4e-89 332.4 194 82.0
FAN26G0572 Fragaria x ananassa HOM05D003103 ORTHO05D003999 3.1e-89 332.0 197 80.2
FAN28G1880 Fragaria x ananassa HOM05D003103 ORTHO05D003999 3.1e-89 332.0 197 80.2
RcHm_v2.0_Chr2g0105921 Rosa chinensis HOM05D003103 ORTHO05D003999 3.1e-89 332.0 197 80.7
Medtr5g017050 Medicago truncatula HOM05D003103 ORTHO05D003999 4.0e-89 331.6 198 80.8
Migut.H00421 Erythranthe guttata HOM05D003103 ORTHO05D003999 6.8e-89 330.9 196 80.1
Psat2g166720 Pisum sativum HOM05D003103 ORTHO05D003999 6.8e-89 330.9 198 80.3
HPP92_025020 Vanilla planifolia HOM05D003103 ORTHO05D003999 6.8e-89 330.9 198 78.8
HPP92_025048 Vanilla planifolia HOM05D003103 ORTHO05D003999 6.8e-89 330.9 198 78.8
RcHm_v2.0_Chr7g0236011 Rosa chinensis HOM05D003103 ORTHO05D003999 2.6e-88 328.9 197 80.2
VMungo1215G3025 Vigna mungo HOM05D003103 ORTHO05D003999 5.8e-88 327.8 198 79.3
FAN23G0049 Fragaria x ananassa HOM05D003103 ORTHO05D003999 7.6e-88 327.4 193 80.3
CSS0023497 Camellia sinensis var. sinensis HOM05D003103 ORTHO05D003999 1.3e-87 326.6 184 82.6
Glyma.01G187500 Glycine max HOM05D003103 ORTHO05D003999 8.4e-87 323.9 198 77.8
SEGI_29401 Sequoiadendron giganteum HOM05D003103 ORTHO05D003999 8.4e-87 323.9 198 76.3
Phvul.002G017800 Phaseolus vulgaris HOM05D003103 ORTHO05D003999 1.1e-86 323.6 196 78.1
Hund16344 Selenicereus undatus HOM05D003103 ORTHO05D003999 1.1e-86 323.6 198 79.3
TPR.G26868 Trifolium pratense HOM05D003103 ORTHO05D003999 4.2e-86 321.6 221 71.9
Mapoly0013s0004 Marchantia polymorpha HOM05D003103 ORTHO05D003999 7.8e-85 317.4 198 72.7
Mapoly0010s0215 Marchantia polymorpha HOM05D003103 ORTHO05D003999 6.6e-84 314.3 198 72.2
Lsat_1_v5_gn_3_89301 Lactuca sativa HOM05D003103 ORTHO05D003999 1.1e-83 313.5 178 83.1
SMO358G0676 Selaginella moellendorffii HOM05D003103 ORTHO05D003999 7.3e-83 310.8 196 73.0
Nitab4.5_0001064g0060 Nicotiana tabacum HOM05D003103 ORTHO05D003999 9.9e-80 300.4 173 80.9
Pp3c24_5980 Physcomitrium patens HOM05D003103 ORTHO05D003999 1.7e-79 299.7 198 72.2
Lj4C151G10 Lonicera japonica HOM05D003103 ORTHO05D003999 4.9e-79 298.1 196 74.0
AagrBONN_evm.TU.Sc2ySwM_344.1320 Anthoceros agrestis HOM05D003103 ORTHO05D003999 1.1e-78 297.0 196 69.4
Lalb_Chr09g0323241 Lupinus albus HOM05D003103 ORTHO05D003999 1.1e-75 287.0 172 79.1
Lsat_1_v5_gn_2_84981 Lactuca sativa HOM05D003103 ORTHO05D003999 1.9e-75 286.2 170 78.2
RcHm_v2.0_Chr1g0342971 Rosa chinensis HOM05D003103 ORTHO05D003999 9.0e-73 277.3 176 74.4
unitig_899.g14947 Utricularia gibba HOM05D003103 ORTHO05D003999 1.0e-68 263.8 157 77.7
PRCOL_00006024 Prasinoderma coloniale HOM05D003103 ORTHO05D003999 8.1e-66 254.2 196 60.7
MCO01G563 Micromonas commoda HOM05D003103 ORTHO05D003999 1.1e-65 253.8 195 62.1
Nitab4.5_0002646g0010 Nicotiana tabacum HOM05D003103 ORTHO05D003999 5.3e-65 251.5 173 71.1
arahy.Tifrunner.gnm1.ann1.556YNA Arachis hypogaea HOM05D003103 ORTHO05D003999 3.2e-62 242.3 132 87.1
SMO143G0022 Selaginella moellendorffii HOM05D003103 ORTHO05D003999 4.2e-62 241.9 204 57.8
FvH4_1g16212 Fragaria vesca HOM05D003103 ORTHO05D003999 1.0e-60 237.3 166 70.5
CBR_g54876 Chara braunii HOM05D003103 ORTHO05D003999 3.1e-49 199.1 158 58.2
Manes.12G104000 Manihot esculenta HOM05D003103 ORTHO05D003999 7.7e-48 194.5 106 84.0
Haze_26099 Corylus avellana HOM05D003103 ORTHO05D003999 7.9e-45 184.5 170 51.8
Zm00001eb063870 Zea mays HOM05D003103 ORTHO05D003999 1.4e-44 183.7 109 81.7
CDE08G1207 Ceratophyllum demersum HOM05D003103 ORTHO05D003999 3.3e-43 179.1 98 84.7
SEGI_07299 Sequoiadendron giganteum HOM05D003103 ORTHO05D003999 7.4e-43 177.9 105 80.0
arahy.Tifrunner.gnm1.ann1.LT9345 Arachis hypogaea HOM05D003103 ORTHO05D003999 9.7e-43 177.6 176 56.2
SGA_v2.0_scaffold62G21520 Striga asiatica HOM05D003103 ORTHO05D003999 7.7e-40 167.9 96 81.2
CDE08G1507 Ceratophyllum demersum HOM05D003103 ORTHO05D000386 1.9e-30 136.7 86 74.4
HanXRQChr16g0531001 Helianthus annuus HOM05D003103 ORTHO05D003999 5.0e-23 112.1 64 79.7
Lsat_1_v5_gn_3_76520 Lactuca sativa HOM05D003103 ORTHO05D003999 5.7e-19 98.6 57 82.5
CBR_g54871 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-15 87.4 56 69.6
Lsat_1_v5_gn_6_68940 Lactuca sativa HOM05D003103 ORTHO05D232577 2.7e-13 79.7 51 72.5


User provided reference genes

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