Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb082670 Zea mays HOM05D004752 ORTHO05D005523 9.8e-72 273.5 150 100.0
Os04g0432600 Oryza sativa ssp. japonica HOM05D004752 ORTHO05D005523 3.5e-37 158.7 97 84.5
Zm00001eb243470 Zea mays HOM05D004752 ORTHO05D005523 1.4e-30 136.7 96 74.0
Aqoxy5G02666 Aquilegia oxysepala HOM05D004752 ORTHO05D005523 3.5e-29 132.1 100 68.0
Lalb_Chr03g0036521 Lupinus albus HOM05D004752 ORTHO05D005523 6.0e-29 131.3 94 69.1
Lalb_Chr19g0129031 Lupinus albus HOM05D004752 ORTHO05D005523 7.9e-29 131.0 94 69.1
Ciclev10002954m.g Citrus clementina HOM05D004752 ORTHO05D005523 3.9e-28 128.6 94 69.1
TAR628G0740 Trochodendron aralioides HOM05D004752 ORTHO05D005523 8.7e-28 127.5 94 68.1
FvH4_5g38800 Fragaria vesca HOM05D004752 ORTHO05D005523 1.5e-27 126.7 94 67.0
FAN18G0635 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.5e-27 126.7 94 67.0
TAR381G0821 Trochodendron aralioides HOM05D004752 ORTHO05D005523 1.5e-27 126.7 95 66.3
AUR62022705 Chenopodium quinoa HOM05D004752 ORTHO05D005523 1.9e-27 126.3 94 70.2
Lalb_Chr01g0010501 Lupinus albus HOM05D004752 ORTHO05D005523 1.9e-27 126.3 74 79.7
FAN04G0063 Fragaria x ananassa HOM05D004752 ORTHO05D005523 2.5e-27 125.9 94 67.0
Atru.chr13.2410 Acer truncatum HOM05D004752 ORTHO05D005523 5.6e-27 124.8 93 69.9
FAN08G2110 Fragaria x ananassa HOM05D004752 ORTHO05D005523 5.6e-27 124.8 94 66.0
FAN13G0652 Fragaria x ananassa HOM05D004752 ORTHO05D005523 5.6e-27 124.8 94 66.0
Thecc.08G186100 Theobroma cacao HOM05D004752 ORTHO05D005523 5.6e-27 124.8 98 69.4
RcHm_v2.0_Chr7g0240801 Rosa chinensis HOM05D004752 ORTHO05D005523 1.3e-26 123.6 94 66.0
Eucgr.F02586 Eucalyptus grandis HOM05D004752 ORTHO05D005523 2.1e-26 122.9 103 64.1
PGR042G3757 Punica granatum HOM05D004752 ORTHO05D005523 2.1e-26 122.9 97 70.1
Duzib177G0553 Durio zibethinus HOM05D004752 ORTHO05D005523 2.8e-26 122.5 98 67.3
Lj5g0024701 Lotus japonicus HOM05D004752 ORTHO05D005523 2.8e-26 122.5 85 74.1
ClCG09G009960 Citrullus lanatus HOM05D004752 ORTHO05D005523 4.8e-26 121.7 75 80.0
Dinv41721 Davidia involucrata HOM05D004752 ORTHO05D005523 4.8e-26 121.7 98 65.3
Duzib211G0386 Durio zibethinus HOM05D004752 ORTHO05D005523 4.8e-26 121.7 98 68.4
Glyma.10G117300 Glycine max HOM05D004752 ORTHO05D005523 4.8e-26 121.7 94 67.0
CiPaw.05G229600 Carya illinoinensis HOM05D004752 ORTHO05D005523 6.2e-26 121.3 94 64.9
Solyc06g065180.3 Solanum lycopersicum HOM05D004752 ORTHO05D005523 8.2e-26 120.9 89 70.8
Lj6g0009552 Lotus japonicus HOM05D004752 ORTHO05D005523 1.1e-25 120.6 95 65.3
Prupe.1G506700 Prunus persica HOM05D004752 ORTHO05D005523 1.1e-25 120.6 94 64.9
Cc00_g06570 Coffea canephora HOM05D004752 ORTHO05D005523 1.4e-25 120.2 98 65.3
COL.COLO4_34528 Corchorus olitorius HOM05D004752 ORTHO05D005523 1.4e-25 120.2 97 68.0
Migut.C01286 Erythranthe guttata HOM05D004752 ORTHO05D005523 1.4e-25 120.2 95 64.2
Sopen06g023680 Solanum pennellii HOM05D004752 ORTHO05D005523 1.4e-25 120.2 89 69.7
THA.LOC104809736 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 1.4e-25 120.2 94 68.1
CSS0011118 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 1.8e-25 119.8 97 67.0
CSS0018537 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 1.8e-25 119.8 97 67.0
CsaV3_2G033590 Cucumis sativus L. HOM05D004752 ORTHO05D005523 2.4e-25 119.4 96 64.6
Glyma.20G068500 Glycine max HOM05D004752 ORTHO05D005523 2.4e-25 119.4 94 66.0
Phvul.007G240400 Phaseolus vulgaris HOM05D004752 ORTHO05D005523 2.4e-25 119.4 93 64.5
Carub.0002s1880 Capsella rubella HOM05D004752 ORTHO05D005523 3.1e-25 119.0 95 61.1
DCAR_011527 Daucus carota HOM05D004752 ORTHO05D005523 3.1e-25 119.0 95 65.3
PGSC0003DMG400026069 Solanum tuberosum HOM05D004752 ORTHO05D005523 4.0e-25 118.6 95 67.4
A07p38200 Brassica napus HOM05D004752 ORTHO05D005523 5.3e-25 118.2 95 62.1
ECA247G0381 Erigeron canadensis HOM05D004752 ORTHO05D005523 5.3e-25 118.2 92 66.3
TPR.G20783 Trifolium pratense HOM05D004752 ORTHO05D005523 5.3e-25 118.2 95 66.3
BcaB03g14924 Brassica carinata HOM05D004752 ORTHO05D005523 6.9e-25 117.9 95 62.1
BcaC08g46649 Brassica carinata HOM05D004752 ORTHO05D005523 6.9e-25 117.9 95 62.1
CARHR064830 Cardamine hirsuta HOM05D004752 ORTHO05D005523 6.9e-25 117.9 95 62.1
FAN02G3062 Fragaria x ananassa HOM05D004752 ORTHO05D005523 6.9e-25 117.9 82 68.3
EL10Ac1g00098 Beta vulgaris HOM05D004752 ORTHO05D005523 9.0e-25 117.5 94 63.8
BolC6t38628H Brassica oleracea HOM05D004752 ORTHO05D005523 9.0e-25 117.5 95 61.1
Ca_21523_v3 Cicer arietinum L. HOM05D004752 ORTHO05D005523 9.0e-25 117.5 94 62.8
MELO3C008132.2 Cucumis melo HOM05D004752 ORTHO05D005523 9.0e-25 117.5 95 64.2
Thhalv10019369m.g Eutrema salsugineum HOM05D004752 ORTHO05D005523 9.0e-25 117.5 95 62.1
BcaC08g46647 Brassica carinata HOM05D004752 ORTHO05D005523 1.2e-24 117.1 95 61.1
BcaC08g46651 Brassica carinata HOM05D004752 ORTHO05D005523 1.2e-24 117.1 95 61.1
BcaC08g46652 Brassica carinata HOM05D004752 ORTHO05D005523 1.2e-24 117.1 95 61.1
C06p35220 Brassica napus HOM05D004752 ORTHO05D005523 1.2e-24 117.1 95 63.2
BraA07t31385Z Brassica rapa HOM05D004752 ORTHO05D005523 1.2e-24 117.1 95 61.1
AUR62004632 Chenopodium quinoa HOM05D004752 ORTHO05D005523 1.2e-24 117.1 106 61.3
Gohir.A05G250200 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.2e-24 117.1 96 67.7
Aa31LG4G8590 Aethionema arabicum HOM05D004752 ORTHO05D005523 1.5e-24 116.7 95 63.2
BcaB05g24700 Brassica carinata HOM05D004752 ORTHO05D005523 1.5e-24 116.7 95 64.2
BcaC03g15326 Brassica carinata HOM05D004752 ORTHO05D005523 1.5e-24 116.7 95 61.1
A02p17630 Brassica napus HOM05D004752 ORTHO05D005523 1.5e-24 116.7 95 61.1
C02p29310 Brassica napus HOM05D004752 ORTHO05D005523 1.5e-24 116.7 95 61.1
C06p46120 Brassica napus HOM05D004752 ORTHO05D005523 1.5e-24 116.7 95 61.1
BolC2t08982H Brassica oleracea HOM05D004752 ORTHO05D005523 1.5e-24 116.7 95 61.1
BolC6t39665H Brassica oleracea HOM05D004752 ORTHO05D005523 1.5e-24 116.7 95 61.1
BraA02t06809Z Brassica rapa HOM05D004752 ORTHO05D005523 1.5e-24 116.7 95 61.1
HanXRQChr04g0109661 Helianthus annuus HOM05D004752 ORTHO05D005523 1.5e-24 116.7 96 64.6
MD00G1104100 Malus domestica HOM05D004752 ORTHO05D005523 1.5e-24 116.7 93 64.5
Sc23g0001310 Simmondsia chinensis HOM05D004752 ORTHO05D005523 2.0e-24 116.3 75 76.0
BcaC08g45743 Brassica carinata HOM05D004752 ORTHO05D005523 2.6e-24 115.9 95 60.0
Medtr1g048960 Medicago truncatula HOM05D004752 ORTHO05D005523 2.6e-24 115.9 95 65.3
FAN18G0607 Fragaria x ananassa HOM05D004752 ORTHO05D005523 3.4e-24 115.5 83 67.5
FAN18G1874 Fragaria x ananassa HOM05D004752 ORTHO05D005523 3.4e-24 115.5 83 67.5
FAN18G2073 Fragaria x ananassa HOM05D004752 ORTHO05D005523 3.4e-24 115.5 83 67.5
Rhsim06G0089000 Rhododendron simsii HOM05D004752 ORTHO05D005523 4.5e-24 115.2 76 72.4
Rhsim11G0057800 Rhododendron simsii HOM05D004752 ORTHO05D005523 4.5e-24 115.2 76 72.4
Sp5g27090 Schrenkiella parvula HOM05D004752 ORTHO05D005523 4.5e-24 115.2 95 60.0
Sed0006132 Sechium edule HOM05D004752 ORTHO05D005523 4.5e-24 115.2 96 61.5
vmacro00760 Vaccinium macrocarpon HOM05D004752 ORTHO05D005523 4.5e-24 115.2 75 73.3
Actinidia29420 Actinidia chinensis HOM05D004752 ORTHO05D005523 5.8e-24 114.8 75 74.7
BcaB03g15640 Brassica carinata HOM05D004752 ORTHO05D005523 5.8e-24 114.8 96 59.4
A07p30460 Brassica napus HOM05D004752 ORTHO05D005523 5.8e-24 114.8 96 59.4
VMungo0720G2181 Vigna mungo HOM05D004752 ORTHO05D005523 5.8e-24 114.8 70 80.0
Gohir.D05G251900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 7.6e-24 114.4 96 65.6
Gohir.D05G253600 Gossypium hirsutum HOM05D004752 ORTHO05D005523 7.6e-24 114.4 96 65.6
Gorai.009G263300 Gossypium raimondii HOM05D004752 ORTHO05D005523 7.6e-24 114.4 96 65.6
Gorai.009G263400 Gossypium raimondii HOM05D004752 ORTHO05D005523 7.6e-24 114.4 96 65.6
Nn5g27610 Nelumbo nucifera HOM05D004752 ORTHO05D005523 1.0e-23 114.0 95 62.1
QL12p035384 Quercus lobata HOM05D004752 ORTHO05D005523 1.0e-23 114.0 93 65.6
Gohir.A05G250100 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.3e-23 113.6 96 64.6
Manes.02G194400 Manihot esculenta HOM05D004752 ORTHO05D005523 1.7e-23 113.2 93 63.4
THA.LOC104816385 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 1.7e-23 113.2 95 64.2
arahy.Tifrunner.gnm1.ann1.S21HCY Arachis hypogaea HOM05D004752 ORTHO05D005523 2.2e-23 112.8 96 62.5
Nitab4.5_0000303g0280 Nicotiana tabacum HOM05D004752 ORTHO05D005523 2.2e-23 112.8 96 64.6
Nitab4.5_0001082g0040 Nicotiana tabacum HOM05D004752 ORTHO05D005523 2.2e-23 112.8 96 64.6
Potri.019G081700 Populus trichocarpa HOM05D004752 ORTHO05D005523 2.2e-23 112.8 95 63.2
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 2.9e-23 112.5 94 58.5
arahy.Tifrunner.gnm1.ann1.0CG85F Arachis hypogaea HOM05D004752 ORTHO05D005523 2.9e-23 112.5 96 62.5
BraA07t30682Z Brassica rapa HOM05D004752 ORTHO05D005523 2.9e-23 112.5 96 58.3
CiPaw.06G024200 Carya illinoinensis HOM05D004752 ORTHO05D005523 2.9e-23 112.5 93 60.2
Lj4E474T0 Lonicera japonica HOM05D004752 ORTHO05D005523 3.8e-23 112.1 70 77.1
PGSC0003DMG400009277 Solanum tuberosum HOM05D004752 ORTHO05D005523 4.9e-23 111.7 74 73.0
PSO170G1458 Papaver somniferum HOM05D004752 ORTHO05D005523 6.5e-23 111.3 96 60.4
PSO782G1292 Papaver somniferum HOM05D004752 ORTHO05D005523 6.5e-23 111.3 96 60.4
Potri.013G110600 Populus trichocarpa HOM05D004752 ORTHO05D005523 6.5e-23 111.3 97 63.9
Nitab4.5_0003010g0020 Nicotiana tabacum HOM05D004752 ORTHO05D005523 8.4e-23 110.9 74 71.6
Peaxi162Scf00268g00615 Petunia axillaris HOM05D004752 ORTHO05D005523 8.4e-23 110.9 96 63.5
Peaxi162Scf00391g00436 Petunia axillaris HOM05D004752 ORTHO05D005523 8.4e-23 110.9 74 70.3
MBI17_g21481_MAGBIO Magnolia biondii HOM05D004752 ORTHO05D005523 3.2e-22 109.0 71 77.5
Rhsim11G0056800 Rhododendron simsii HOM05D004752 ORTHO05D005523 3.2e-22 109.0 81 70.4
MD15G1358900 Malus domestica HOM05D004752 ORTHO05D005523 5.5e-22 108.2 94 59.6
Nitab4.5_0000365g0250 Nicotiana tabacum HOM05D004752 ORTHO05D005523 5.5e-22 108.2 75 72.0
Hund27095 Selenicereus undatus HOM05D004752 ORTHO05D005523 7.1e-22 107.8 95 62.1
Gohir.D09G112900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 9.3e-22 107.5 98 58.2
TWI59G0745 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 9.3e-22 107.5 96 59.4
Sc01g0001860 Simmondsia chinensis HOM05D004752 ORTHO05D005523 1.2e-21 107.1 76 68.4
Actinidia03509 Actinidia chinensis HOM05D004752 ORTHO05D005523 1.6e-21 106.7 70 74.3
Gorai.006G130300 Gossypium raimondii HOM05D004752 ORTHO05D005523 1.6e-21 106.7 99 57.6
Manes.18G103200 Manihot esculenta HOM05D004752 ORTHO05D005523 1.6e-21 106.7 96 60.4
PGR102G0675 Punica granatum HOM05D004752 ORTHO05D005523 1.6e-21 106.7 99 62.6
SalBow6G0286 Salvia bowleyana HOM05D004752 ORTHO05D005523 2.1e-21 106.3 70 71.4
SalBow6G5891 Salvia bowleyana HOM05D004752 ORTHO05D005523 2.1e-21 106.3 70 71.4
Sabra19G0093300 Salix brachista HOM05D004752 ORTHO05D005523 2.7e-21 105.9 73 72.6
Gohir.D09G112701 Gossypium hirsutum HOM05D004752 ORTHO05D005523 3.5e-21 105.5 97 57.7
TWI14G1278 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 3.5e-21 105.5 96 57.3
AL2G31650 Arabidopsis lyrata HOM05D004752 ORTHO05D005523 6.0e-21 104.8 96 56.2
unitig_0.g2130 Utricularia gibba HOM05D004752 ORTHO05D005523 1.3e-20 103.6 82 61.0
CANSAT80G1056 Cannabis sativa HOM05D004752 ORTHO05D005523 2.3e-20 102.8 99 60.6
Duzib177G0197 Durio zibethinus HOM05D004752 ORTHO05D005523 2.3e-20 102.8 98 59.2
SalBow6G5456 Salvia bowleyana HOM05D004752 ORTHO05D005523 3.0e-20 102.4 93 57.0
SalBow6G7070 Salvia bowleyana HOM05D004752 ORTHO05D005523 3.0e-20 102.4 93 57.0
MSTRG.1541 Avicennia marina HOM05D004752 ORTHO05D005523 3.9e-20 102.1 101 56.4
HPP92_000079 Vanilla planifolia HOM05D004752 ORTHO05D005523 3.9e-20 102.1 57 86.0
AT1G72020 Arabidopsis thaliana HOM05D004752 ORTHO05D005523 5.1e-20 101.7 96 53.1
SEGI_26065 Sequoiadendron giganteum HOM05D004752 ORTHO05D005523 5.1e-20 101.7 92 58.7
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 5.1e-20 101.7 70 71.4
CDE04G0573 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 8.7e-20 100.9 94 59.6
CDE07G1886 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 1.1e-19 100.5 94 59.6
ATR0071G025 Amborella trichopoda HOM05D004752 ORTHO05D005523 1.9e-19 99.8 71 73.2
MSTRG.25459 Avicennia marina HOM05D004752 ORTHO05D005523 3.3e-19 99.0 96 55.2
Lsat_1_v5_gn_1_12481 Lactuca sativa HOM05D004752 ORTHO05D005523 4.3e-19 98.6 97 57.7
GSVIVG01012767001 Vitis vinifera HOM05D004752 ORTHO05D005523 3.7e-18 95.5 104 51.9
unitig_747.g21474 Utricularia gibba HOM05D004752 ORTHO05D005523 1.8e-17 93.2 61 73.8
Gohir.A09G115700 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.0e-15 87.4 62 69.4
SHI09031 Sapria himalayana HOM05D004752 ORTHO05D005523 6.5e-15 84.7 69 55.1
CBR_g3658 Chara braunii HOM05D004752 ORTHO05D005523 7.4e-11 71.2 81 49.4
Pp3c19_1780 Physcomitrium patens HOM05D004752 ORTHO05D005523 9.1e-09 64.3 97 42.3
AagrBONN_evm.TU.Sc2ySwM_117.1418 Anthoceros agrestis HOM05D004752 ORTHO05D005523 1.2e-08 63.9 90 38.9


User provided reference genes

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