Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb080920 Zea mays HOM05D003963 ORTHO05D004558 1.1e-196 690.6 626 100.0
Zm00001eb423980 Zea mays HOM05D003963 ORTHO05D004558 3.4e-166 589.3 624 92.5
Os04g0458200 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 4.1e-111 406.4 634 80.6
Os02g0575700 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 2.2e-56 224.6 666 67.1
Zm00001eb182980 Zea mays HOM05D003963 ORTHO05D004558 6.8e-50 203.0 636 65.9
Zm00001eb244890 Zea mays HOM05D003963 ORTHO05D004558 1.2e-43 182.2 639 64.5
MBI05_g46461_MAGBIO Magnolia biondii HOM05D003963 ORTHO05D004558 4.0e-34 150.6 642 62.8
TAR381G1468 Trochodendron aralioides HOM05D003963 ORTHO05D004558 1.7e-32 145.2 600 66.2
Os04g0640900 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 4.9e-32 143.7 211 46.9
Nn1g05173 Nelumbo nucifera HOM05D003963 ORTHO05D004558 1.1e-31 142.5 645 59.2
Nn5g28887 Nelumbo nucifera HOM05D003963 ORTHO05D004558 3.5e-30 137.5 258 41.5
Aqoxy6G00464 Aquilegia oxysepala HOM05D003963 ORTHO05D004558 1.1e-28 132.5 611 64.0
Duzib052G0219 Durio zibethinus HOM05D003963 ORTHO05D004558 4.0e-26 124.0 644 57.8
PSO541G3622 Papaver somniferum HOM05D003963 ORTHO05D004558 6.9e-26 123.2 252 39.3
Zm00001eb068980 Zea mays HOM05D003963 ORTHO05D004558 9.0e-26 122.9 612 63.1
PSO675G1096 Papaver somniferum HOM05D003963 ORTHO05D004558 4.4e-25 120.6 251 39.0
Hma1.2p1_0557F.1_g178060 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 5.8e-25 120.2 575 64.7
TWI23G1041 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 1.3e-24 119.0 641 56.9
Zm00001eb347870 Zea mays HOM05D003963 ORTHO05D010684 1.7e-24 118.6 212 41.0
Eucgr.I02691 Eucalyptus grandis HOM05D003963 ORTHO05D004558 2.2e-24 118.2 634 57.7
Manes.04G062400 Manihot esculenta HOM05D003963 ORTHO05D004558 2.2e-24 118.2 665 57.1
TWI59G0617 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 2.9e-24 117.9 639 59.5
FvH4_5g30651 Fragaria vesca HOM05D003963 ORTHO05D004558 3.8e-24 117.5 634 58.5
COL.COLO4_20869 Corchorus olitorius HOM05D003963 ORTHO05D004558 4.9e-24 117.1 644 57.1
ECA236G3037 Erigeron canadensis HOM05D003963 ORTHO05D004558 4.9e-24 117.1 644 60.1
Thecc.02G143400 Theobroma cacao HOM05D003963 ORTHO05D004558 6.4e-24 116.7 639 57.4
Dinv19323 Davidia involucrata HOM05D003963 ORTHO05D004558 8.4e-24 116.3 613 59.7
RcHm_v2.0_Chr7g0225521 Rosa chinensis HOM05D003963 ORTHO05D004558 1.1e-23 115.9 640 57.7
EL10Ac8g19340 Beta vulgaris HOM05D003963 ORTHO05D004558 1.9e-23 115.2 640 57.5
Lsat_1_v5_gn_7_80140 Lactuca sativa HOM05D003963 ORTHO05D004558 1.9e-23 115.2 635 58.0
AUR62027385 Chenopodium quinoa HOM05D003963 ORTHO05D004558 2.4e-23 114.8 639 57.0
Potri.003G023300 Populus trichocarpa HOM05D003963 ORTHO05D004558 5.4e-23 113.6 601 59.4
CSS0000527 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 7.1e-23 113.2 646 58.0
FAN04G2665 Fragaria x ananassa HOM05D003963 ORTHO05D004558 9.3e-23 112.8 628 58.8
HanXRQChr11g0337121 Helianthus annuus HOM05D003963 ORTHO05D004558 9.3e-23 112.8 647 58.0
CSS0022227 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 1.2e-22 112.5 646 58.2
Gorai.013G063300 Gossypium raimondii HOM05D003963 ORTHO05D004558 1.2e-22 112.5 640 59.1
Prupe.1G559700 Prunus persica HOM05D003963 ORTHO05D004558 1.6e-22 112.1 638 56.9
MD15G1414300 Malus domestica HOM05D003963 ORTHO05D004558 2.1e-22 111.7 646 58.0
Sabra03G0014600 Salix brachista HOM05D003963 ORTHO05D004558 2.1e-22 111.7 602 59.6
FAN13G1550 Fragaria x ananassa HOM05D003963 ORTHO05D004558 2.7e-22 111.3 633 60.3
VMungo0251G0315 Vigna mungo HOM05D003963 ORTHO05D004558 6.0e-22 110.2 252 35.3
vmacro01810 Vaccinium macrocarpon HOM05D003963 ORTHO05D004558 7.8e-22 109.8 590 61.5
AUR62031300 Chenopodium quinoa HOM05D003963 ORTHO05D004558 1.3e-21 109.0 640 56.9
Ah.09g232110 Amaranthus hybridus HOM05D003963 ORTHO05D004558 1.7e-21 108.6 237 36.3
CAN.G523.95 Capsicum annuum HOM05D003963 ORTHO05D004558 1.7e-21 108.6 610 60.0
MD08G1221900 Malus domestica HOM05D003963 ORTHO05D004558 2.3e-21 108.2 661 55.1
Ah.14g085400 Amaranthus hybridus HOM05D003963 ORTHO05D004558 3.0e-21 107.8 644 56.4
Ca_18336_v3 Cicer arietinum L. HOM05D003963 ORTHO05D004558 3.9e-21 107.5 646 56.8
Medtr4g094290 Medicago truncatula HOM05D003963 ORTHO05D004558 3.9e-21 107.5 257 34.6
QL11p019412 Quercus lobata HOM05D003963 ORTHO05D004558 8.7e-21 106.3 662 56.0
Sc14g0002710 Simmondsia chinensis HOM05D003963 ORTHO05D004558 8.7e-21 106.3 208 39.4
Gohir.D02G195000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 1.1e-20 105.9 254 35.0
Sp2g27620 Schrenkiella parvula HOM05D003963 ORTHO05D004558 1.1e-20 105.9 239 36.0
TPR.G10467 Trifolium pratense HOM05D003963 ORTHO05D004558 1.1e-20 105.9 257 35.0
Carub.0008s2535 Capsella rubella HOM05D003963 ORTHO05D004558 2.5e-20 104.8 240 37.1
Cpa.g.sc0.13 Carica papaya HOM05D003963 ORTHO05D004558 2.5e-20 104.8 634 56.5
Atru.chr6.908 Acer truncatum HOM05D003963 ORTHO05D004558 3.3e-20 104.4 269 35.3
Potri.001G206600 Populus trichocarpa HOM05D003963 ORTHO05D004558 4.3e-20 104.0 636 56.0
SalBow6G3757 Salvia bowleyana HOM05D003963 ORTHO05D004558 7.3e-20 103.2 603 59.2
SalBow6G4534 Salvia bowleyana HOM05D003963 ORTHO05D004558 7.3e-20 103.2 603 59.2
AL8G41940 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 9.6e-20 102.8 239 37.2
Haze_10775 Corylus avellana HOM05D003963 ORTHO05D004558 9.6e-20 102.8 655 55.6
Hma1.2p1_0217F.1_g091740 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 1.6e-19 102.1 201 40.3
Duzib248G1667 Durio zibethinus HOM05D003963 ORTHO05D004558 2.1e-19 101.7 644 56.8
AT5G64550 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 2.8e-19 101.3 243 36.2
CiPaw.05G038900 Carya illinoinensis HOM05D003963 ORTHO05D004558 2.8e-19 101.3 273 35.2
Gorai.005G217900 Gossypium raimondii HOM05D003963 ORTHO05D004558 2.8e-19 101.3 642 56.4
Phvul.002G206700 Phaseolus vulgaris HOM05D003963 ORTHO05D004558 2.8e-19 101.3 214 37.9
Solyc01g104910.3 Solanum lycopersicum HOM05D003963 ORTHO05D004558 2.8e-19 101.3 610 60.0
Gohir.A13G065700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 3.6e-19 100.9 253 35.6
Sopen01g047420 Solanum pennellii HOM05D003963 ORTHO05D004558 3.6e-19 100.9 610 60.0
CANSAT11G0470 Cannabis sativa HOM05D003963 ORTHO05D004558 4.8e-19 100.5 639 56.5
ClCG06G009720 Citrullus lanatus HOM05D003963 ORTHO05D004558 4.8e-19 100.5 637 57.0
Dinv24217 Davidia involucrata HOM05D003963 ORTHO05D004558 4.8e-19 100.5 214 37.4
Glyma.05G120100 Glycine max HOM05D003963 ORTHO05D004558 8.1e-19 99.8 252 33.3
Rhsim11G0134700 Rhododendron simsii HOM05D003963 ORTHO05D004558 8.1e-19 99.8 592 61.0
Sabra03G0014700 Salix brachista HOM05D003963 ORTHO05D004558 8.1e-19 99.8 607 59.8
Thhalv10003819m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 1.1e-18 99.4 258 33.7
Glyma.08G074900 Glycine max HOM05D003963 ORTHO05D004558 1.1e-18 99.4 252 33.3
Peaxi162Scf00001g00041 Petunia axillaris HOM05D003963 ORTHO05D004558 1.1e-18 99.4 601 58.9
Peaxi162Scf00001g00043 Petunia axillaris HOM05D003963 ORTHO05D004558 1.1e-18 99.4 601 58.9
PGSC0003DMG400029740 Solanum tuberosum HOM05D003963 ORTHO05D004558 1.1e-18 99.4 610 59.3
BcaC03g18430 Brassica carinata HOM05D003963 ORTHO05D004558 1.8e-18 98.6 234 33.3
Gohir.A03G171700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 2.4e-18 98.2 596 59.7
Sed0018276 Sechium edule HOM05D003963 ORTHO05D004558 2.4e-18 98.2 597 59.0
Actinidia28070 Actinidia chinensis HOM05D003963 ORTHO05D004558 3.1e-18 97.8 277 32.9
DCAR_029216 Daucus carota HOM05D003963 ORTHO05D004558 4.0e-18 97.4 602 61.5
Nitab4.5_0003748g0020 Nicotiana tabacum HOM05D003963 ORTHO05D004558 4.0e-18 97.4 616 56.8
CARHR278520 Cardamine hirsuta HOM05D003963 ORTHO05D004558 6.9e-18 96.7 235 36.2
Peaxi162Scf00003g00367 Petunia axillaris HOM05D003963 ORTHO05D004558 6.9e-18 96.7 588 59.2
Lalb_Chr13g0291591 Lupinus albus HOM05D003963 ORTHO05D004558 9.0e-18 96.3 269 33.1
Aa31LG3G17400 Aethionema arabicum HOM05D003963 ORTHO05D004558 1.2e-17 95.9 205 38.0
Aa31sc1834G20 Aethionema arabicum HOM05D003963 ORTHO05D004558 1.2e-17 95.9 205 38.0
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 1.5e-17 95.5 656 55.2
Ciclev10000572m.g Citrus clementina HOM05D003963 ORTHO05D004558 2.0e-17 95.1 631 56.1
Gohir.D13G056000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 2.0e-17 95.1 640 57.8
Lj4g0008212 Lotus japonicus HOM05D003963 ORTHO05D004558 2.6e-17 94.7 256 34.0
GSVIVG01038733001 Vitis vinifera HOM05D003963 ORTHO05D004558 4.5e-17 94.0 235 34.9
Nitab4.5_0002865g0100 Nicotiana tabacum HOM05D003963 ORTHO05D004558 5.8e-17 93.6 602 58.0
Aa31LG1G17380 Aethionema arabicum HOM05D003963 ORTHO05D004558 7.6e-17 93.2 208 38.0
Oeu037198.2 Olea europaea HOM05D003963 ORTHO05D004558 7.6e-17 93.2 634 56.0
THA.LOC104799580 Tarenaya hassleriana HOM05D003963 ORTHO05D004558 7.6e-17 93.2 204 36.8
Cfa005579 Carpinus fangiana HOM05D003963 ORTHO05D004558 1.3e-16 92.4 654 54.7
MELO3C020350.2 Cucumis melo HOM05D003963 ORTHO05D004558 1.3e-16 92.4 635 56.4
ECA234G1426 Erigeron canadensis HOM05D003963 ORTHO05D004558 2.2e-16 91.7 188 38.3
Psat7g097440 Pisum sativum HOM05D003963 ORTHO05D004558 2.2e-16 91.7 646 55.7
CiPaw.06G151200 Carya illinoinensis HOM05D003963 ORTHO05D004558 2.9e-16 91.3 270 31.9
Cc02_g21840 Coffea canephora HOM05D003963 ORTHO05D004558 2.9e-16 91.3 629 56.1
Lalb_Chr12g0208491 Lupinus albus HOM05D003963 ORTHO05D004558 2.9e-16 91.3 250 35.6
AT5G09670 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 6.4e-16 90.1 201 38.3
Thhalv10013049m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 6.4e-16 90.1 257 32.7
Peaxi162Scf00152g01123 Petunia axillaris HOM05D003963 ORTHO05D004558 1.1e-15 89.4 217 34.6
AL6G20100 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 1.4e-15 89.0 244 34.0
A06p31280 Brassica napus HOM05D003963 ORTHO05D004558 1.9e-15 88.6 205 35.1
BraA06t26067Z Brassica rapa HOM05D003963 ORTHO05D004558 1.9e-15 88.6 205 35.1
CsaV3_2G011200 Cucumis sativus L. HOM05D003963 ORTHO05D004558 3.2e-15 87.8 634 56.5
Hund06704 Selenicereus undatus HOM05D003963 ORTHO05D004558 4.2e-15 87.4 190 37.9
SalBow5G2159 Salvia bowleyana HOM05D003963 ORTHO05D004558 5.4e-15 87.0 615 58.0
Oeu000233.2 Olea europaea HOM05D003963 ORTHO05D004558 7.1e-15 86.7 202 33.7
ATR0564G216 Amborella trichopoda HOM05D003963 ORTHO05D004558 9.3e-15 86.3 241 34.0
Migut.B00637 Erythranthe guttata HOM05D003963 ORTHO05D004558 9.3e-15 86.3 612 57.4
Lalb_Chr07g0189461 Lupinus albus HOM05D003963 ORTHO05D004558 9.3e-15 86.3 233 35.6
Oeu037196.1 Olea europaea HOM05D003963 ORTHO05D004558 1.2e-14 85.9 253 31.6
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 1.6e-14 85.5 237 34.2
Sp6g33710 Schrenkiella parvula HOM05D003963 ORTHO05D004558 2.7e-14 84.7 197 35.5
Actinidia00250 Actinidia chinensis HOM05D003963 ORTHO05D004558 3.5e-14 84.3 604 56.1
C03p61710 Brassica napus HOM05D003963 ORTHO05D004558 7.9e-14 83.2 205 34.1
BolC3t18432H Brassica oleracea HOM05D003963 ORTHO05D004558 7.9e-14 83.2 205 34.1
Rhsim11G0135400 Rhododendron simsii HOM05D003963 ORTHO05D004558 7.9e-14 83.2 210 36.7
HPP92_027148 Vanilla planifolia HOM05D003963 ORTHO05D004558 1.0e-13 82.8 224 33.9
Atru.chr10.2100 Acer truncatum HOM05D003963 ORTHO05D004558 3.9e-13 80.9 120 44.2
MSTRG.16566 Avicennia marina HOM05D003963 ORTHO05D004558 8.7e-13 79.7 637 55.7
BraA09t36518Z Brassica rapa HOM05D003963 ORTHO05D004558 8.7e-13 79.7 237 30.4
CDE05G1767 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 8.7e-13 79.7 137 41.6
A09p08700 Brassica napus HOM05D003963 ORTHO05D004558 1.9e-12 78.6 237 30.0
Atru.chr10.2101 Acer truncatum HOM05D003963 ORTHO05D004558 4.3e-12 77.4 255 32.5
unitig_62.g23623 Utricularia gibba HOM05D003963 ORTHO05D004558 7.4e-12 76.6 201 33.3
Lj9P318T69 Lonicera japonica HOM05D003963 ORTHO05D004558 9.6e-12 76.3 104 51.0
HPP92_016461 Vanilla planifolia HOM05D003963 ORTHO05D004558 1.3e-11 75.9 107 50.5
BcaB05g21539 Brassica carinata HOM05D003963 ORTHO05D004558 1.6e-11 75.5 234 32.5
BraA02t09261Z Brassica rapa HOM05D003963 ORTHO05D004558 1.6e-11 75.5 203 34.5
SGA_v2.0_scaffold45G17289 Striga asiatica HOM05D003963 ORTHO05D004558 2.1e-11 75.1 231 32.5
CARHR203720 Cardamine hirsuta HOM05D003963 ORTHO05D004558 3.7e-11 74.3 232 32.8
C02p63440 Brassica napus HOM05D003963 ORTHO05D004558 4.8e-11 73.9 575 61.2
BolC2t12411H Brassica oleracea HOM05D003963 ORTHO05D004558 4.8e-11 73.9 575 61.2
BolC9t53891H Brassica oleracea HOM05D003963 ORTHO05D004558 5.3e-10 70.5 236 28.8
Lsat_1_v5_gn_5_106681 Lactuca sativa HOM05D003963 ORTHO05D004558 9.0e-10 69.7 106 45.3
BcaB07g29747 Brassica carinata HOM05D003963 ORTHO05D004558 1.2e-09 69.3 239 30.5
A02p43350 Brassica napus HOM05D003963 ORTHO05D004558 1.2e-09 69.3 574 61.5
Pp3c11_24820 Physcomitrium patens HOM05D031910 ORTHO05D004558 2.0e-09 68.6 202 35.6
BcaC04g23312 Brassica carinata HOM05D003963 ORTHO05D004558 2.6e-09 68.2 192 31.2
C09p09830 Brassica napus HOM05D003963 ORTHO05D004558 3.4e-09 67.8 116 37.9
A02p00100 Brassica napus HOM05D003963 ORTHO05D004558 5.8e-09 67.0 196 34.2
CDE02G0069 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 9.9e-09 66.2 117 41.0
SEGI_28658 Sequoiadendron giganteum HOM05D003548 ORTHO05D004066 1.3e-08 65.9 125 36.0
BcaB04g19973 Brassica carinata HOM05D003963 ORTHO05D004558 2.9e-08 64.7 132 38.6
Mapoly0048s0020 Marchantia polymorpha HOM05D003963 ORTHO05D004558 2.9e-08 64.7 150 35.3
Pp3c7_8590 Physcomitrium patens HOM05D031910 ORTHO05D004558 1.1e-07 62.8 120 39.2
BraA02t04995Z Brassica rapa HOM05D003963 ORTHO05D004558 2.4e-07 61.6 187 33.2
BcaC03g13269 Brassica carinata HOM05D003963 ORTHO05D004558 5.5e-07 60.5 192 31.2
BolC2t06362H Brassica oleracea HOM05D006324 ORTHO05D007463 5.5e-07 60.5 192 31.2
Haze_09989 Corylus avellana HOM05D003963 ORTHO05D004558 9.3e-07 59.7 134 35.8
MBI05_g29099_MAGBIO Magnolia biondii HOM05D003963 ORTHO05D004558 1.6e-06 58.9 120 36.7
HPP92_006483 Vanilla planifolia HOM05D003548 ORTHO05D004066 1.6e-06 58.9 75 46.7
Actinidia34177 Actinidia chinensis HOM05D003548 ORTHO05D004066 6.0e-06 57.0 123 34.1
MBI06_g29318_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 7.9e-06 56.6 216 29.2
Peaxi162Scf00074g00156 Petunia axillaris HOM05D003548 ORTHO05D004066 7.9e-06 56.6 66 50.0
SalBow1G6595 Salvia bowleyana HOM05D003548 ORTHO05D004066 7.9e-06 56.6 257 24.5


User provided reference genes

Program Settings