Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb080880 Zea mays HOM05D000344 ORTHO05D003478 1.6e-46 189.1 98 100.0
Zm00001eb068590 Zea mays HOM05D000344 ORTHO05D003478 4.2e-31 137.9 95 80.0
Zm00001eb429630 Zea mays HOM05D000565 ORTHO05D003478 4.2e-31 137.9 91 81.3
Zm00001eb180270 Zea mays HOM05D000344 ORTHO05D003478 1.5e-25 119.4 93 69.9
CSS0046390 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D003478 1.2e-14 83.2 86 54.7
FAN19G0151 Fragaria x ananassa HOM05D000344 ORTHO05D003478 1.2e-14 83.2 93 57.0
FAN28G2688 Fragaria x ananassa HOM05D000344 ORTHO05D003478 1.2e-14 83.2 93 57.0
FvH4_1g02230 Fragaria vesca HOM05D000344 ORTHO05D003478 2.7e-14 82.0 93 55.9
HPP92_021720 Vanilla planifolia HOM05D000344 ORTHO05D003478 3.6e-14 81.6 88 56.8
HPP92_027027 Vanilla planifolia HOM05D000344 ORTHO05D003478 3.6e-14 81.6 88 56.8
FAN26G2779 Fragaria x ananassa HOM05D000344 ORTHO05D003478 4.7e-14 81.3 93 55.9
Manes.14G117800 Manihot esculenta HOM05D000344 ORTHO05D003478 4.7e-14 81.3 91 52.7
Nn2g12155 Nelumbo nucifera HOM05D000344 ORTHO05D003478 8.0e-14 80.5 93 59.1
TAR625G1378 Trochodendron aralioides HOM05D000344 ORTHO05D003478 8.0e-14 80.5 96 53.1
Sed0019075 Sechium edule HOM05D000344 ORTHO05D003478 1.4e-13 79.7 92 57.6
Psat4g035800 Pisum sativum HOM05D000344 ORTHO05D003478 1.8e-13 79.3 99 55.6
Haze_25467 Corylus avellana HOM05D000344 ORTHO05D003478 2.3e-13 79.0 96 55.2
MD15G1163000 Malus domestica HOM05D000344 ORTHO05D003478 2.3e-13 79.0 96 56.2
RcHm_v2.0_Chr2g0087351 Rosa chinensis HOM05D000344 ORTHO05D003478 2.3e-13 79.0 96 54.2
TWI34G0931 Tripterygium wilfordii HOM05D000344 ORTHO05D003478 3.0e-13 78.6 96 55.2
Haze_25471 Corylus avellana HOM05D000344 ORTHO05D003478 4.0e-13 78.2 96 54.2
Cpa.g.sc277.16 Carica papaya HOM05D000344 ORTHO05D003478 5.2e-13 77.8 91 57.1
Cfa002289 Carpinus fangiana HOM05D000344 ORTHO05D003478 5.2e-13 77.8 96 55.2
Gohir.A08G089200 Gossypium hirsutum HOM05D000344 ORTHO05D003478 5.2e-13 77.8 103 49.5
QL02p090317 Quercus lobata HOM05D000344 ORTHO05D003478 8.8e-13 77.0 104 48.1
arahy.Tifrunner.gnm1.ann1.HXU5VM Arachis hypogaea HOM05D000344 ORTHO05D003478 1.2e-12 76.6 99 52.5
CiPaw.04G176600 Carya illinoinensis HOM05D000344 ORTHO05D003478 1.2e-12 76.6 96 55.2
Ca_21650_v3 Cicer arietinum L. HOM05D000344 ORTHO05D003478 1.2e-12 76.6 98 53.1
Gohir.A13G201400 Gossypium hirsutum HOM05D000344 ORTHO05D003478 1.2e-12 76.6 98 50.0
Gohir.D08G100400 Gossypium hirsutum HOM05D000344 ORTHO05D003478 1.2e-12 76.6 103 48.5
Gorai.004G108200 Gossypium raimondii HOM05D000344 ORTHO05D003478 1.2e-12 76.6 103 48.5
Prupe.7G251600 Prunus persica HOM05D000344 ORTHO05D003478 1.2e-12 76.6 96 55.2
TWI63G0430 Tripterygium wilfordii HOM05D000344 ORTHO05D003478 1.2e-12 76.6 97 54.6
VMungo1215G0392 Vigna mungo HOM05D000344 ORTHO05D003478 1.2e-12 76.6 102 52.9
arahy.Tifrunner.gnm1.ann1.EVM46I Arachis hypogaea HOM05D000344 ORTHO05D003478 1.5e-12 76.3 102 52.9
Glyma.17G109100 Glycine max HOM05D000344 ORTHO05D003478 1.5e-12 76.3 99 52.5
MD02G1020200 Malus domestica HOM05D000344 ORTHO05D003478 1.5e-12 76.3 96 52.1
Duzib187G1206 Durio zibethinus HOM05D000344 ORTHO05D003478 2.0e-12 75.9 104 50.0
HanXRQChr05g0143571 Helianthus annuus HOM05D000344 ORTHO05D003478 2.0e-12 75.9 89 55.1
Atru.chr7.1979 Acer truncatum HOM05D000344 ORTHO05D003478 2.6e-12 75.5 93 52.7
Phvul.003G171000 Phaseolus vulgaris HOM05D000344 ORTHO05D003478 2.6e-12 75.5 102 52.0
Actinidia21934 Actinidia chinensis HOM05D000344 ORTHO05D003478 3.4e-12 75.1 86 48.8
CANSAT11G0662 Cannabis sativa HOM05D000344 ORTHO05D003478 3.4e-12 75.1 106 52.8
Dinv41457 Davidia involucrata HOM05D000344 ORTHO05D003478 3.4e-12 75.1 87 56.3
Duzib150G1444 Durio zibethinus HOM05D000344 ORTHO05D003478 3.4e-12 75.1 101 46.5
THA.LOC104815300 Tarenaya hassleriana HOM05D000344 ORTHO05D003478 3.4e-12 75.1 94 52.1
vmacro07738 Vaccinium macrocarpon HOM05D000344 ORTHO05D003478 3.4e-12 75.1 94 48.9
ClCG11G003400 Citrullus lanatus HOM05D000344 ORTHO05D003478 4.4e-12 74.7 102 51.0
Eucgr.C00319 Eucalyptus grandis HOM05D000344 ORTHO05D003478 4.4e-12 74.7 91 56.0
Eucgr.C00496 Eucalyptus grandis HOM05D000344 ORTHO05D003478 4.4e-12 74.7 91 56.0
Medtr4g115880 Medicago truncatula HOM05D000344 ORTHO05D003478 4.4e-12 74.7 104 51.0
COL.COLO4_15553 Corchorus olitorius HOM05D000344 ORTHO05D003478 5.7e-12 74.3 102 49.0
Aqoxy7G03609 Aquilegia oxysepala HOM05D000344 ORTHO05D003478 7.5e-12 73.9 95 51.6
Glyma.13G162300 Glycine max HOM05D000344 ORTHO05D003478 9.8e-12 73.6 99 52.5
Lsat_1_v5_gn_8_61360 Lactuca sativa HOM05D000344 ORTHO05D003478 9.8e-12 73.6 89 50.6
Lj7C437G7 Lonicera japonica HOM05D000344 ORTHO05D003478 9.8e-12 73.6 88 51.1
Thecc.09G135300 Theobroma cacao HOM05D000344 ORTHO05D003478 9.8e-12 73.6 100 48.0
Ciclev10007858m.g Citrus clementina HOM05D000344 ORTHO05D003478 1.7e-11 72.8 92 50.0
MELO3C004472.2 Cucumis melo HOM05D000344 ORTHO05D003478 2.2e-11 72.4 102 51.0
CsaV3_2G003240 Cucumis sativus L. HOM05D000344 ORTHO05D003478 2.2e-11 72.4 102 51.0
CSS0050456 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D003478 2.8e-11 72.0 85 49.4
Lalb_Chr13g0301411 Lupinus albus HOM05D000344 ORTHO05D003478 2.8e-11 72.0 100 50.0
FAN23G3131 Fragaria x ananassa HOM05D000344 ORTHO05D003478 3.7e-11 71.6 92 54.3
Duzib168G0306 Durio zibethinus HOM05D000344 ORTHO05D003478 4.8e-11 71.2 100 46.0
Gohir.D13G207100 Gossypium hirsutum HOM05D000344 ORTHO05D003478 4.8e-11 71.2 98 49.0
Gorai.013G236100 Gossypium raimondii HOM05D000344 ORTHO05D003478 4.8e-11 71.2 98 49.0
Peaxi162Scf00088g01025 Petunia axillaris HOM05D000344 ORTHO05D003478 4.8e-11 71.2 92 48.9
Rhsim01G0059700 Rhododendron simsii HOM05D000344 ORTHO05D003478 6.3e-11 70.9 98 48.0
Sabra18G0104900 Salix brachista HOM05D000344 ORTHO05D003478 1.1e-10 70.1 90 48.9
Hund09299 Selenicereus undatus HOM05D000344 ORTHO05D003478 1.1e-10 70.1 86 52.3
SGA_v2.0_scaffold183G39893 Striga asiatica HOM05D000344 ORTHO05D003478 1.8e-10 69.3 88 48.9
Aa31sc74G40 Aethionema arabicum HOM05D000344 ORTHO05D003478 3.1e-10 68.6 99 46.5
Potri.018G123200 Populus trichocarpa HOM05D000344 ORTHO05D003478 3.1e-10 68.6 90 48.9
Nitab4.5_0000704g0050 Nicotiana tabacum HOM05D000344 ORTHO05D003478 5.4e-10 67.8 90 50.0
HPP92_020609 Vanilla planifolia HOM05D000344 ORTHO05D003478 1.2e-09 66.6 78 48.7
ECA236G4203 Erigeron canadensis HOM05D000344 ORTHO05D003478 2.0e-09 65.9 89 46.1
SalBow1G4409 Salvia bowleyana HOM05D000344 ORTHO05D003478 2.7e-09 65.5 87 49.4
GSVIVG01012836001 Vitis vinifera HOM05D000344 ORTHO05D003478 2.7e-09 65.5 65 60.0
Dinv36460 Davidia involucrata HOM05D005237 ORTHO05D006189 3.5e-09 65.1 72 58.3
MSTRG.10651 Avicennia marina HOM05D000344 ORTHO05D003478 5.9e-09 64.3 87 48.3
MD08G1052900 Malus domestica HOM05D000344 ORTHO05D003478 7.7e-09 63.9 84 44.0
Nitab4.5_0002267g0010 Nicotiana tabacum HOM05D000344 ORTHO05D003478 7.7e-09 63.9 90 46.7
Sopen07g003630 Solanum pennellii HOM05D000344 ORTHO05D003478 7.7e-09 63.9 95 46.3
Cpa.g.sc148.35 Carica papaya HOM05D000344 ORTHO05D003478 1.0e-08 63.5 89 44.9
FAN15G2802 Fragaria x ananassa HOM05D000344 ORTHO05D003478 1.3e-08 63.2 84 40.5
FvH4_2g41240 Fragaria vesca HOM05D000344 ORTHO05D003478 1.7e-08 62.8 84 40.5
MD15G1042700 Malus domestica HOM05D000344 ORTHO05D003478 1.7e-08 62.8 84 42.9
Sp6g32670 Schrenkiella parvula HOM05D000344 ORTHO05D003478 1.7e-08 62.8 86 41.9
DCAR_014905 Daucus carota HOM05D000344 ORTHO05D003478 2.9e-08 62.0 87 47.1
Gorai.010G244700 Gossypium raimondii HOM05D000344 ORTHO05D003478 3.8e-08 61.6 84 38.1
SMO144G0169 Selaginella moellendorffii HOM05D000344 ORTHO05D003478 3.8e-08 61.6 92 43.5
Eucgr.C00299 Eucalyptus grandis HOM05D000344 ORTHO05D003478 8.5e-08 60.5 93 46.2
Thhalv10013142m.g Eutrema salsugineum HOM05D000344 ORTHO05D003478 8.5e-08 60.5 86 39.5
Migut.K00411 Erythranthe guttata HOM05D000344 ORTHO05D003478 1.1e-07 60.1 86 45.3
Prupe.1G396000 Prunus persica HOM05D000344 ORTHO05D003478 1.1e-07 60.1 86 44.2
unitig_26.g9518 Utricularia gibba HOM05D000344 ORTHO05D003478 1.1e-07 60.1 88 45.5
Gohir.D07G037100 Gossypium hirsutum HOM05D000344 ORTHO05D003478 1.5e-07 59.7 89 40.4
Cc06_g07820 Coffea canephora HOM05D000344 ORTHO05D003478 1.9e-07 59.3 99 42.4
Gohir.D13G187400 Gossypium hirsutum HOM05D000344 ORTHO05D003478 1.9e-07 59.3 84 36.9
CARHR202510 Cardamine hirsuta HOM05D000344 ORTHO05D003478 2.5e-07 58.9 86 40.7
CDE01G0649 Ceratophyllum demersum HOM05D000344 ORTHO05D003478 2.5e-07 58.9 89 43.8
Eucgr.C00530 Eucalyptus grandis HOM05D000344 ORTHO05D003478 3.2e-07 58.5 68 55.9
RcHm_v2.0_Chr6g0299261 Rosa chinensis HOM05D000344 ORTHO05D003478 3.2e-07 58.5 73 39.7
Pp3c7_13690 Physcomitrium patens HOM05D000344 ORTHO05D003478 4.2e-07 58.2 75 49.3
PGR044G0522 Punica granatum HOM05D000344 ORTHO05D003478 4.2e-07 58.2 68 45.6
GSVIVG01035988001 Vitis vinifera HOM05D000344 ORTHO05D003478 4.2e-07 58.2 58 51.7
Atru.chr7.2547 Acer truncatum HOM05D000344 ORTHO05D003478 5.5e-07 57.8 90 37.8
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 5.5e-07 57.8 76 43.4
CBR_g25882 Chara braunii HOM05D000344 ORTHO05D003478 5.5e-07 57.8 65 50.8
ClCG05G016160 Citrullus lanatus HOM05D000344 ORTHO05D003478 5.5e-07 57.8 87 34.5
Ciclev10007902m.g Citrus clementina HOM05D000344 ORTHO05D003478 5.5e-07 57.8 85 37.6
Lj7A737T44 Lonicera japonica HOM05D000344 ORTHO05D003478 5.5e-07 57.8 89 42.7
C02p04670 Brassica napus HOM05D000344 ORTHO05D003478 7.2e-07 57.4 87 41.4
Gohir.A13G179300 Gossypium hirsutum HOM05D000344 ORTHO05D003478 7.2e-07 57.4 84 35.7
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 9.4e-07 57.0 74 43.2
Carub.0006s0929 Capsella rubella HOM05D000344 ORTHO05D003478 9.4e-07 57.0 86 39.5
CAN.G1382.5 Capsicum annuum HOM05D000344 ORTHO05D003478 9.4e-07 57.0 75 45.3
Mapoly0053s0037 Marchantia polymorpha HOM05D000344 ORTHO05D003478 9.4e-07 57.0 80 42.5
SEGI_18100 Sequoiadendron giganteum HOM05D000344 ORTHO05D003478 9.4e-07 57.0 59 44.1
Gorai.001G038700 Gossypium raimondii HOM05D000344 ORTHO05D003478 1.2e-06 56.6 89 34.8
Sc08g0006190 Simmondsia chinensis HOM05D000344 ORTHO05D003478 1.2e-06 56.6 86 47.7
A02p00670 Brassica napus HOM05D000344 ORTHO05D003478 1.6e-06 56.2 54 46.3
AL6G21370 Arabidopsis lyrata HOM05D000344 ORTHO05D003478 2.1e-06 55.8 86 39.5
MELO3C016949.2 Cucumis melo HOM05D000344 ORTHO05D003478 2.1e-06 55.8 86 38.4
MBI14_g31379_MAGBIO Magnolia biondii HOM05D000344 ORTHO05D003478 2.1e-06 55.8 69 43.5
Manes.16G131400 Manihot esculenta HOM05D000344 ORTHO05D003478 2.1e-06 55.8 84 33.3
Sed0011564 Sechium edule HOM05D000344 ORTHO05D003478 2.1e-06 55.8 79 36.7
Actinidia14138 Actinidia chinensis HOM05D000344 ORTHO05D003478 2.7e-06 55.5 89 43.8
Aa31LG3G16310 Aethionema arabicum HOM05D000344 ORTHO05D003478 2.7e-06 55.5 87 39.1
BcaC03g13333 Brassica carinata HOM05D000344 ORTHO05D003478 2.7e-06 55.5 76 42.1
CiPaw.07G231700 Carya illinoinensis HOM05D000344 ORTHO05D003478 2.7e-06 55.5 84 38.1
CsaV3_4G036430 Cucumis sativus L. HOM05D000344 ORTHO05D003478 2.7e-06 55.5 87 37.9
Dinv01907 Davidia involucrata HOM05D000344 ORTHO05D003478 2.7e-06 55.5 93 43.0
Thecc.09G013900 Theobroma cacao HOM05D000344 ORTHO05D003478 2.7e-06 55.5 86 37.2
BraA02t05051Z Brassica rapa HOM05D000344 ORTHO05D003478 3.6e-06 55.1 86 36.0
Gohir.A07G033500 Gossypium hirsutum HOM05D000344 ORTHO05D003478 3.6e-06 55.1 91 35.2
SHI03219 Sapria himalayana HOM05D000344 ORTHO05D003478 3.6e-06 55.1 69 44.9
ATR0580G183 Amborella trichopoda HOM05D000344 ORTHO05D003478 4.7e-06 54.7 89 40.4
Psat6g027480 Pisum sativum HOM05D000344 ORTHO05D003478 6.1e-06 54.3 85 38.8
Hund02974 Selenicereus undatus HOM05D000344 ORTHO05D003478 6.1e-06 54.3 89 38.2
THA.LOC104814982 Tarenaya hassleriana HOM05D000344 ORTHO05D003478 6.1e-06 54.3 86 37.2
TPR.G38840 Trifolium pratense HOM05D000344 ORTHO05D003478 6.1e-06 54.3 85 40.0
Cfa013027 Carpinus fangiana HOM05D000344 ORTHO05D003478 8.0e-06 53.9 84 36.9
TAR383G0569 Trochodendron aralioides HOM05D000344 ORTHO05D003478 8.0e-06 53.9 87 35.6
vmacro05118 Vaccinium macrocarpon HOM05D000344 ORTHO05D003478 8.0e-06 53.9 87 39.1


User provided reference genes

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