Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb080830 Zea mays HOM05D004366 ORTHO05D005058 2.1e-109 399.1 203 100.0
Os04g0459600 Oryza sativa ssp. japonica HOM05D004366 ORTHO05D005058 5.2e-92 341.3 200 84.0
MBI02_g23682_MAGBIO Magnolia biondii HOM05D004366 ORTHO05D005058 1.2e-77 293.5 201 71.1
ATR0564G205 Amborella trichopoda HOM05D004366 ORTHO05D005058 2.9e-74 282.3 200 68.5
Sc11g0001840 Simmondsia chinensis HOM05D004366 ORTHO05D005058 2.3e-71 272.7 198 66.7
FvH4_4g31510 Fragaria vesca HOM05D004366 ORTHO05D005058 3.9e-71 271.9 203 67.0
FAN12G0862 Fragaria x ananassa HOM05D004366 ORTHO05D005058 3.9e-71 271.9 203 67.0
QL03p064520 Quercus lobata HOM05D004366 ORTHO05D005058 5.1e-71 271.6 190 69.5
Manes.01G186800 Manihot esculenta HOM05D004366 ORTHO05D005058 1.9e-70 269.6 190 70.0
Atru.chr11.1817 Acer truncatum HOM05D004366 ORTHO05D005058 2.5e-70 269.2 200 66.5
CSS0003416 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 4.3e-70 268.5 198 67.7
CiPaw.06G083500 Carya illinoinensis HOM05D004366 ORTHO05D005058 5.6e-70 268.1 198 67.2
Actinidia31203 Actinidia chinensis HOM05D004366 ORTHO05D005058 7.3e-70 267.7 198 67.2
Nitab4.5_0000141g0240 Nicotiana tabacum HOM05D004366 ORTHO05D005058 7.3e-70 267.7 198 66.7
Ciclev10032771m.g Citrus clementina HOM05D004366 ORTHO05D005058 9.5e-70 267.3 200 67.0
SalBow2G0488 Salvia bowleyana HOM05D004366 ORTHO05D005058 1.2e-69 266.9 198 65.7
FAN17G2550 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.6e-69 266.5 203 66.0
Peaxi162Scf00026g03112 Petunia axillaris HOM05D004366 ORTHO05D005058 1.6e-69 266.5 198 67.7
CSS0021388 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 2.1e-69 266.2 198 67.2
MELO3C012087.2 Cucumis melo HOM05D004366 ORTHO05D005058 2.1e-69 266.2 202 65.8
Eucgr.B03429 Eucalyptus grandis HOM05D004366 ORTHO05D005058 2.1e-69 266.2 198 67.2
Lj2g0005379 Lotus japonicus HOM05D004366 ORTHO05D005058 2.1e-69 266.2 203 67.5
ClCG05G024360 Citrullus lanatus HOM05D004366 ORTHO05D005058 2.8e-69 265.8 188 69.7
PGR102G1003 Punica granatum HOM05D004366 ORTHO05D005058 6.2e-69 264.6 198 67.2
CSS0022805 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 8.1e-69 264.2 198 65.7
Cc11_g13140 Coffea canephora HOM05D004366 ORTHO05D005058 8.1e-69 264.2 190 67.9
CsaV3_5G032600 Cucumis sativus L. HOM05D004366 ORTHO05D005058 8.1e-69 264.2 202 65.8
CAN.G473.145 Capsicum annuum HOM05D004366 ORTHO05D005058 1.4e-68 263.5 198 67.7
FAN15G0746 Fragaria x ananassa HOM05D004366 ORTHO05D005058 3.1e-68 262.3 203 66.0
Gorai.013G084600 Gossypium raimondii HOM05D004366 ORTHO05D005058 3.1e-68 262.3 198 66.7
Nn4g23131 Nelumbo nucifera HOM05D004366 ORTHO05D005058 3.1e-68 262.3 201 65.7
Glyma.01G045700 Glycine max HOM05D004366 ORTHO05D005058 4.0e-68 261.9 189 68.3
Solyc01g010810.4 Solanum lycopersicum HOM05D004366 ORTHO05D005058 4.0e-68 261.9 198 66.7
Migut.L01306 Erythranthe guttata HOM05D004366 ORTHO05D005058 5.2e-68 261.5 198 64.6
Gohir.D13G074000 Gossypium hirsutum HOM05D004366 ORTHO05D005058 5.2e-68 261.5 198 66.7
Hund05888 Selenicereus undatus HOM05D004366 ORTHO05D005058 5.2e-68 261.5 190 66.8
Sopen01g006640 Solanum pennellii HOM05D004366 ORTHO05D005058 6.8e-68 261.2 198 66.2
Cpa.g.sc128.8 Carica papaya HOM05D004366 ORTHO05D005058 8.9e-68 260.8 198 65.7
COL.COLO4_22987 Corchorus olitorius HOM05D004366 ORTHO05D005058 8.9e-68 260.8 198 67.7
Lalb_Chr04g0256161 Lupinus albus HOM05D004366 ORTHO05D005058 8.9e-68 260.8 189 68.3
Sed0027317 Sechium edule HOM05D004366 ORTHO05D005058 8.9e-68 260.8 198 66.7
Thecc.02G350500 Theobroma cacao HOM05D004366 ORTHO05D005058 8.9e-68 260.8 198 67.2
Gohir.A13G073900 Gossypium hirsutum HOM05D004366 ORTHO05D005058 1.2e-67 260.4 198 66.2
Ca_04775_v3 Cicer arietinum L. HOM05D004366 ORTHO05D005058 1.5e-67 260.0 189 68.3
Medtr5g039690 Medicago truncatula HOM05D004366 ORTHO05D005058 1.5e-67 260.0 199 64.3
AL2G28850 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 2.0e-67 259.6 198 64.1
EL10Ac6g13190 Beta vulgaris HOM05D004366 ORTHO05D005058 2.0e-67 259.6 199 62.8
FAN24G0452 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.0e-67 259.6 203 64.0
Prupe.1G272700 Prunus persica HOM05D004366 ORTHO05D005058 2.0e-67 259.6 190 67.9
Rhsim12G0062000 Rhododendron simsii HOM05D004366 ORTHO05D005058 2.6e-67 259.2 190 68.4
Aa31LG4G11100 Aethionema arabicum HOM05D004366 ORTHO05D005058 3.4e-67 258.8 198 63.1
Glyma.02G106000 Glycine max HOM05D004366 ORTHO05D005058 3.4e-67 258.8 189 67.7
Medtr8g463620 Medicago truncatula HOM05D004366 ORTHO05D005058 3.4e-67 258.8 199 63.8
Phvul.002G086500 Phaseolus vulgaris HOM05D004366 ORTHO05D005058 4.4e-67 258.5 189 67.7
FAN27G2895 Fragaria x ananassa HOM05D004366 ORTHO05D005058 5.8e-67 258.1 204 65.7
MD13G1073400 Malus domestica HOM05D004366 ORTHO05D005058 5.8e-67 258.1 190 68.4
PGSC0003DMG400006558 Solanum tuberosum HOM05D004366 ORTHO05D005058 5.8e-67 258.1 198 65.7
TWI12G0004 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 7.6e-67 257.7 190 68.9
RcHm_v2.0_Chr4g0440001 Rosa chinensis HOM05D004366 ORTHO05D005058 2.2e-66 256.1 203 65.0
Sabra13G0046200 Salix brachista HOM05D004366 ORTHO05D005058 2.2e-66 256.1 198 65.2
AT1G69680 Arabidopsis thaliana HOM05D004366 ORTHO05D005058 2.9e-66 255.8 198 64.1
AUR62026617 Chenopodium quinoa HOM05D004366 ORTHO05D005058 2.9e-66 255.8 199 64.3
Aqoxy3G03355 Aquilegia oxysepala HOM05D004366 ORTHO05D005058 6.4e-66 254.6 200 62.0
Carub.0002s1634 Capsella rubella HOM05D004366 ORTHO05D005058 6.4e-66 254.6 198 63.6
MD16G1074700 Malus domestica HOM05D004366 ORTHO05D005058 6.4e-66 254.6 190 67.9
A07p31430 Brassica napus HOM05D004366 ORTHO05D005058 1.4e-65 253.4 197 63.5
BraA07t30778Z Brassica rapa HOM05D004366 ORTHO05D005058 1.4e-65 253.4 197 63.5
SGA_v2.0_scaffold20G09275 Striga asiatica HOM05D004366 ORTHO05D005058 1.4e-65 253.4 198 62.6
TWI53G1314 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 1.4e-65 253.4 198 64.6
arahy.Tifrunner.gnm1.ann1.5V6A51 Arachis hypogaea HOM05D004366 ORTHO05D005058 2.4e-65 252.7 208 60.6
Psat0s2341g0040 Pisum sativum HOM05D004366 ORTHO05D005058 2.4e-65 252.7 198 64.1
THA.LOC104822115 Tarenaya hassleriana HOM05D004366 ORTHO05D005058 3.2e-65 252.3 198 62.1
FvH4_2g13310 Fragaria vesca HOM05D004366 ORTHO05D005058 4.1e-65 251.9 204 63.2
BcaC08g46415 Brassica carinata HOM05D004366 ORTHO05D005058 5.4e-65 251.5 198 61.1
BolC6t38782H Brassica oleracea HOM05D004366 ORTHO05D005058 5.4e-65 251.5 197 63.5
BolC6t39421H Brassica oleracea HOM05D004366 ORTHO05D005058 5.4e-65 251.5 198 61.1
A07p36060 Brassica napus HOM05D004366 ORTHO05D005058 7.1e-65 251.1 198 61.1
BraA07t31186Z Brassica rapa HOM05D004366 ORTHO05D005058 7.1e-65 251.1 198 61.1
C06p43460 Brassica napus HOM05D004366 ORTHO05D005058 9.2e-65 250.8 198 61.1
Thhalv10019150m.g Eutrema salsugineum HOM05D004366 ORTHO05D005058 9.2e-65 250.8 198 62.6
Lj3C1038T15 Lonicera japonica HOM05D004366 ORTHO05D005058 9.2e-65 250.8 190 66.8
C06p36720 Brassica napus HOM05D004366 ORTHO05D005058 1.6e-64 250.0 197 62.4
PSO339G1196 Papaver somniferum HOM05D004366 ORTHO05D005058 2.1e-64 249.6 198 61.1
BcaB03g14744 Brassica carinata HOM05D004366 ORTHO05D005058 2.7e-64 249.2 198 60.6
BcaB03g15490 Brassica carinata HOM05D004366 ORTHO05D005058 3.5e-64 248.8 193 63.7
CARHR062670 Cardamine hirsuta HOM05D004366 ORTHO05D005058 6.0e-64 248.1 198 63.1
AUR62034912 Chenopodium quinoa HOM05D004366 ORTHO05D005058 6.0e-64 248.1 180 66.7
AUR62005764 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.7e-63 246.5 180 67.2
Oeu028302.2 Olea europaea HOM05D004366 ORTHO05D005058 1.7e-63 246.5 196 65.3
Lsat_1_v5_gn_8_52741 Lactuca sativa HOM05D004366 ORTHO05D005058 2.3e-63 246.1 190 64.7
PSO384G0235 Papaver somniferum HOM05D004366 ORTHO05D005058 3.9e-63 245.4 198 60.6
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 3.9e-63 245.4 185 62.7
Sp5g24810 Schrenkiella parvula HOM05D004366 ORTHO05D005058 8.6e-63 244.2 198 60.6
SEGI_03925 Sequoiadendron giganteum HOM05D004366 ORTHO05D005058 7.3e-62 241.1 195 58.5
PSO675G4203 Papaver somniferum HOM05D004366 ORTHO05D005058 1.2e-61 240.4 198 59.6
HanXRQChr12g0362541 Helianthus annuus HOM05D004366 ORTHO05D005058 1.6e-61 240.0 190 62.1
Sp3g28750 Schrenkiella parvula HOM05D004366 ORTHO05D005058 2.1e-61 239.6 201 58.7
unitig_22.g6909 Utricularia gibba HOM05D004366 ORTHO05D005058 2.4e-60 236.1 198 61.6
AL7G43580 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 3.1e-60 235.7 184 64.1
HanXRQChr08g0210471 Helianthus annuus HOM05D004366 ORTHO05D005058 8.9e-60 234.2 190 62.1
Nitab4.5_0005950g0010 Nicotiana tabacum HOM05D004366 ORTHO05D005058 2.0e-59 233.0 198 61.6
AUR62028793 Chenopodium quinoa HOM05D004366 ORTHO05D005058 3.4e-59 232.3 199 59.3
ECA233G4070 Erigeron canadensis HOM05D004366 ORTHO05D005058 3.4e-59 232.3 190 61.6
arahy.Tifrunner.gnm1.ann1.QXP3RB Arachis hypogaea HOM05D004366 ORTHO05D005058 4.4e-59 231.9 173 64.2
Haze_12025 Corylus avellana HOM05D004366 ORTHO05D005058 2.2e-58 229.6 198 60.1
Potri.013G049900 Populus trichocarpa HOM05D004366 ORTHO05D005058 2.2e-58 229.6 181 64.1
BcaC08g45875 Brassica carinata HOM05D004366 ORTHO05D005058 2.9e-58 229.2 200 59.5
Duzib248G1524 Durio zibethinus HOM05D004366 ORTHO05D005058 4.9e-58 228.4 198 62.6
Oeu013622.3 Olea europaea HOM05D004366 ORTHO05D005058 1.4e-57 226.9 200 60.0
Aa31sc15G10 Aethionema arabicum HOM05D004366 ORTHO05D005058 1.2e-56 223.8 174 64.4
CANSAT54G1616 Cannabis sativa HOM05D004366 ORTHO05D005058 1.2e-56 223.8 190 61.1
CANSAT25G1390 Cannabis sativa HOM05D004366 ORTHO05D005058 1.7e-55 219.9 190 60.5
VMungo1215G0984 Vigna mungo HOM05D004366 ORTHO05D005058 1.7e-55 219.9 166 68.7
SGA_v2.0_scaffold53G19387 Striga asiatica HOM05D004366 ORTHO05D005058 7.3e-54 214.5 235 52.8
Hma1.2p1_0598F.1_g186660 Hydrangea macrophylla HOM05D004366 ORTHO05D005058 3.6e-53 212.2 328 41.2
Aa31LG9G5650 Aethionema arabicum HOM05D004366 ORTHO05D005058 2.0e-51 206.5 217 50.7
Ah.03g135200 Amaranthus hybridus HOM05D004366 ORTHO05D005058 2.0e-51 206.5 199 52.8
GSVIVG01020010001 Vitis vinifera HOM05D004366 ORTHO05D005058 6.4e-50 201.4 165 63.6
AagrBONN_evm.TU.Sc2ySwM_344.5131 Anthoceros agrestis HOM05D004366 ORTHO05D005058 8.4e-50 201.1 198 52.5
FAN22G2022 Fragaria x ananassa HOM05D004366 ORTHO05D005058 3.2e-49 199.1 238 49.6
Pp3c9_14930 Physcomitrium patens HOM05D004366 ORTHO05D005058 1.0e-47 194.1 188 52.7
vmacro01244 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 5.1e-47 191.8 248 46.8
TPR.G39101 Trifolium pratense HOM05D004366 ORTHO05D005058 9.0e-44 181.0 168 56.5
Cfa008996 Carpinus fangiana HOM05D004366 ORTHO05D005058 7.6e-43 177.9 217 47.0
CBR_g17957 Chara braunii HOM05D004366 ORTHO05D005058 6.4e-42 174.9 198 48.0
SMO147G0050 Selaginella moellendorffii HOM05D004366 ORTHO05D005058 1.4e-41 173.7 195 51.3
DCAR_027406 Daucus carota HOM05D002775 ORTHO05D005058 1.6e-40 170.2 128 67.2
vmacro01242 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 4.8e-37 158.7 223 44.8
arahy.Tifrunner.gnm1.ann1.4LW61L Arachis hypogaea HOM05D004366 ORTHO05D005058 9.0e-36 154.5 115 62.6
AagrBONN_evm.TU.Sc2ySwM_362.1786 Anthoceros agrestis HOM05D004366 ORTHO05D005058 7.6e-35 151.4 173 48.0
Pp3c15_14240 Physcomitrium patens HOM05D004366 ORTHO05D005058 1.1e-33 147.5 166 48.8
Dinv16634 Davidia involucrata HOM05D004366 ORTHO05D005058 4.6e-32 142.1 104 68.3
SalBow2G3183 Salvia bowleyana HOM05D004366 ORTHO05D005058 4.6e-32 142.1 116 60.3
TAR629G2773 Trochodendron aralioides HOM05D004366 ORTHO05D005058 1.5e-30 137.1 112 61.6
Mapoly0113s0045 Marchantia polymorpha HOM05D004366 ORTHO05D005058 5.7e-30 135.2 202 40.1
MSTRG.695 Avicennia marina HOM05D004366 ORTHO05D005058 2.4e-28 129.8 87 70.1
Potri.019G023800 Populus trichocarpa HOM05D004366 ORTHO05D005058 2.0e-27 126.7 83 72.3
Lj6A789T49 Lonicera japonica HOM05D004366 ORTHO05D005058 7.2e-25 118.2 85 63.5
MD11G1061500 Malus domestica HOM05D004366 ORTHO05D005058 1.2e-24 117.5 104 58.7
CSS0000370 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 2.7e-24 116.3 70 81.4
CSS0042124 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.0e-23 114.4 70 80.0
MCO13G325 Micromonas commoda HOM05D004366 ORTHO05D005058 1.8e-23 113.6 199 40.7
arahy.Tifrunner.gnm1.ann1.J913Y5 Arachis hypogaea HOM05D004366 ORTHO05D005058 4.3e-22 109.0 87 58.6
arahy.Tifrunner.gnm1.ann1.D4KK35 Arachis hypogaea HOM05D004366 ORTHO05D005058 9.7e-22 107.8 116 50.9
arahy.Tifrunner.gnm1.ann1.MY0RSE Arachis hypogaea HOM05D004366 ORTHO05D005058 1.3e-21 107.5 103 54.4
PGSC0003DMG400015729 Solanum tuberosum HOM05D004366 ORTHO05D005058 1.1e-17 94.4 97 54.6
FAN07G2952 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.5e-17 93.2 75 61.3
Rhsim11G0057700 Rhododendron simsii HOM05D004366 ORTHO05D005058 7.2e-17 91.7 70 64.3
PRCOL_00002884 Prasinoderma coloniale HOM05D004366 ORTHO05D005058 9.4e-17 91.3 193 32.1
CAN.G154.11 Capsicum annuum HOM05D004366 ORTHO05D005058 1.4e-15 87.4 130 43.1
BcaC07g37109 Brassica carinata HOM05D004366 ORTHO05D005058 7.4e-14 81.6 77 51.9
arahy.Tifrunner.gnm1.ann1.N9R1JE Arachis hypogaea HOM05D004366 ORTHO05D005058 1.7e-13 80.5 77 54.5
C08p04780 Brassica napus HOM05D004366 ORTHO05D005058 2.2e-13 80.1 73 53.4
arahy.Tifrunner.gnm1.ann1.8CQ436 Arachis hypogaea HOM05D004366 ORTHO05D005058 2.4e-12 76.6 68 57.4
SalBow1G5797 Salvia bowleyana HOM05D004366 ORTHO05D005058 3.1e-12 76.3 63 60.3
BolC8t47277H Brassica oleracea HOM05D004366 ORTHO05D005058 4.1e-12 75.9 78 51.3
Cre05.g244850 Chlamydomonas reinhardtii HOM05D004366 ORTHO05D005058 5.3e-12 75.5 199 30.2
arahy.Tifrunner.gnm1.ann1.NKT7G2 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.3e-10 70.9 101 42.6
CANSAT54G0841 Cannabis sativa HOM05D001400 ORTHO05D001795 2.2e-10 70.1 75 52.0
Lsat_1_v5_gn_1_103541 Lactuca sativa HOM05D004366 ORTHO05D005058 7.2e-09 65.1 70 50.0
AUR62028525 Chenopodium quinoa HOM05D004366 ORTHO05D000022 2.0e-06 57.0 43 60.5


User provided reference genes

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