Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb080710 Zea mays HOM05D006960 ORTHO05D008699 7.8e-118 427.2 221 100.0
Os04g0460500 Oryza sativa ssp. japonica HOM05D006960 ORTHO05D008699 4.2e-95 351.7 225 80.4
Actinidia20248 Actinidia chinensis HOM05D000567 ORTHO05D001981 1.1e-66 257.3 217 65.0
TAR629G1073 Trochodendron aralioides HOM05D006960 ORTHO05D008699 9.1e-66 254.2 214 64.5
EL10Ac1g00259 Beta vulgaris HOM05D006960 ORTHO05D008699 2.6e-65 252.7 214 65.9
Glyma.20G102700 Glycine max HOM05D006960 ORTHO05D008699 2.6e-65 252.7 229 62.4
DCAR_021504 Daucus carota HOM05D006960 ORTHO05D008699 4.5e-65 251.9 220 64.5
Lalb_Chr06g0163941 Lupinus albus HOM05D006960 ORTHO05D008699 5.9e-65 251.5 199 65.8
PSO063G6262 Papaver somniferum HOM05D006960 ORTHO05D008699 5.9e-65 251.5 206 65.0
Lj5g0001318 Lotus japonicus HOM05D006960 ORTHO05D008699 1.3e-64 250.4 213 63.8
Oeu007886.1 Olea europaea HOM05D006960 ORTHO05D008699 1.7e-64 250.0 205 66.8
Oeu014974.1 Olea europaea HOM05D006960 ORTHO05D008699 1.7e-64 250.0 205 66.8
VMungo0720G2201 Vigna mungo HOM05D006960 ORTHO05D008699 1.7e-64 250.0 196 66.8
Aqoxy6G00316 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 2.2e-64 249.6 228 61.8
Migut.B01880 Erythranthe guttata HOM05D006960 ORTHO05D008699 2.9e-64 249.2 204 66.7
Haze_15666 Corylus avellana HOM05D000451 ORTHO05D000351 5.0e-64 248.4 222 62.6
Psat6g234040 Pisum sativum HOM05D006960 ORTHO05D008699 6.5e-64 248.1 213 64.8
ECA236G0577 Erigeron canadensis HOM05D006960 ORTHO05D008699 1.1e-63 247.3 214 63.6
MSTRG.17349 Avicennia marina HOM05D006960 ORTHO05D008699 1.5e-63 246.9 230 59.1
Sc01g0002630 Simmondsia chinensis HOM05D000016 ORTHO05D007083 1.5e-63 246.9 200 66.0
CANSAT56G1276 Cannabis sativa HOM05D006960 ORTHO05D008699 1.9e-63 246.5 207 64.3
MBI06_g44795_MAGBIO Magnolia biondii HOM05D006960 ORTHO05D008699 1.9e-63 246.5 194 70.6
CSS0036785 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 2.5e-63 246.1 204 66.2
Ciclev10022060m.g Citrus clementina HOM05D006960 ORTHO05D008699 2.5e-63 246.1 215 63.3
CSS0028122 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 3.2e-63 245.7 204 65.7
Phvul.007G014400 Phaseolus vulgaris HOM05D006960 ORTHO05D008699 7.2e-63 244.6 210 63.3
Prupe.2G189500 Prunus persica HOM05D006960 ORTHO05D008699 7.2e-63 244.6 222 61.7
Rhsim01G0172900 Rhododendron simsii HOM05D006960 ORTHO05D008699 9.4e-63 244.2 201 66.7
Nn8g41032 Nelumbo nucifera HOM05D006960 ORTHO05D008699 2.7e-62 242.7 195 68.7
QL04p060559 Quercus lobata HOM05D006960 ORTHO05D008699 2.7e-62 242.7 203 64.5
HanXRQChr06g0170731 Helianthus annuus HOM05D006960 ORTHO05D008699 3.6e-62 242.3 202 66.3
Rhsim04G0222700 Rhododendron simsii HOM05D006960 ORTHO05D008699 3.6e-62 242.3 201 66.2
vmacro12673 Vaccinium macrocarpon HOM05D006960 ORTHO05D008699 8.0e-62 241.1 202 63.4
ClCG09G009460 Citrullus lanatus HOM05D006960 ORTHO05D008699 1.0e-61 240.7 214 62.1
Cpa.g.sc46.111 Carica papaya HOM05D006960 ORTHO05D008699 1.4e-61 240.4 217 63.6
Sed0021558 Sechium edule HOM05D006960 ORTHO05D008699 1.8e-61 240.0 200 65.5
PGSC0003DMG400007011 Solanum tuberosum HOM05D006960 ORTHO05D008699 1.8e-61 240.0 232 60.3
PSO170G4910 Papaver somniferum HOM05D006960 ORTHO05D008699 3.0e-61 239.2 198 65.2
TWI14G0597 Tripterygium wilfordii HOM05D006960 ORTHO05D008699 5.2e-61 238.4 221 61.5
GSVIVG01027159001 Vitis vinifera HOM05D006960 ORTHO05D008699 5.2e-61 238.4 214 62.6
Medtr5g015740 Medicago truncatula HOM05D006960 ORTHO05D008699 6.7e-61 238.0 199 65.3
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 8.8e-61 237.7 162 72.2
Ca_11259_v3 Cicer arietinum L. HOM05D006960 ORTHO05D008699 8.8e-61 237.7 213 62.0
SalBow3G0783 Salvia bowleyana HOM05D006960 ORTHO05D008699 8.8e-61 237.7 230 59.6
Atru.chr5.678 Acer truncatum HOM05D006960 ORTHO05D008699 1.1e-60 237.3 214 61.7
COL.COLO4_21448 Corchorus olitorius HOM05D006960 ORTHO05D008699 1.1e-60 237.3 249 56.2
CAN.G1178.29 Capsicum annuum HOM05D006960 ORTHO05D008699 1.5e-60 236.9 206 62.1
AUR62004502 Chenopodium quinoa HOM05D006960 ORTHO05D008699 1.5e-60 236.9 201 63.7
Medtr1g114590 Medicago truncatula HOM05D006960 ORTHO05D008699 1.5e-60 236.9 199 64.8
Nitab4.5_0000258g0220 Nicotiana tabacum HOM05D006960 ORTHO05D008699 1.5e-60 236.9 207 63.8
Potri.014G099500 Populus trichocarpa HOM05D006960 ORTHO05D008699 1.5e-60 236.9 242 55.4
Solyc05g050570.3 Solanum lycopersicum HOM05D006960 ORTHO05D008699 1.5e-60 236.9 231 59.7
Nitab4.5_0004506g0020 Nicotiana tabacum HOM05D006960 ORTHO05D008699 2.0e-60 236.5 207 63.3
Sopen05g029010 Solanum pennellii HOM05D006960 ORTHO05D008699 2.6e-60 236.1 231 59.3
FAN10G0984 Fragaria x ananassa HOM05D006960 ORTHO05D008699 3.3e-60 235.7 201 62.2
SGA_v2.0_scaffold22G09984 Striga asiatica HOM05D006960 ORTHO05D008699 3.3e-60 235.7 205 62.0
MELO3C024139.2 Cucumis melo HOM05D006960 ORTHO05D008699 4.4e-60 235.3 229 58.1
FAN06G3195 Fragaria x ananassa HOM05D006960 ORTHO05D008699 7.5e-60 234.6 201 61.7
FAN10G4095 Fragaria x ananassa HOM05D006960 ORTHO05D008699 7.5e-60 234.6 201 61.7
Thecc.01G341400 Theobroma cacao HOM05D006960 ORTHO05D008699 9.7e-60 234.2 247 55.5
FAN06G2002 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.3e-59 233.8 201 61.7
MD07G1150800 Malus domestica HOM05D006960 ORTHO05D008699 1.3e-59 233.8 201 62.2
Cc01_g12480 Coffea canephora HOM05D006960 ORTHO05D008699 1.7e-59 233.4 208 60.6
FvH4_7g16680 Fragaria vesca HOM05D006960 ORTHO05D008699 1.7e-59 233.4 201 61.7
Gohir.D11G102000 Gossypium hirsutum HOM05D006960 ORTHO05D008699 1.7e-59 233.4 248 56.9
FAN01G3090 Fragaria x ananassa HOM05D006960 ORTHO05D008699 2.2e-59 233.0 201 61.7
Gorai.007G109000 Gossypium raimondii HOM05D006960 ORTHO05D008699 2.2e-59 233.0 248 56.5
Lsat_1_v5_gn_8_13101 Lactuca sativa HOM05D006960 ORTHO05D008699 2.2e-59 233.0 221 61.1
Gohir.A11G097200 Gossypium hirsutum HOM05D006960 ORTHO05D008699 4.8e-59 231.9 246 56.9
Sabra14G0073000 Salix brachista HOM05D006960 ORTHO05D008699 4.8e-59 231.9 231 57.1
TPR.G4075 Trifolium pratense HOM05D006960 ORTHO05D008699 4.8e-59 231.9 215 60.0
Peaxi162Scf00716g00022 Petunia axillaris HOM05D006960 ORTHO05D008699 1.1e-58 230.7 199 63.3
Aqoxy3G01066 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 1.4e-58 230.3 195 65.6
arahy.Tifrunner.gnm1.ann1.CCVT8N Arachis hypogaea HOM05D006960 ORTHO05D008699 2.4e-58 229.6 158 72.2
RcHm_v2.0_Chr1g0359831 Rosa chinensis HOM05D006960 ORTHO05D008699 4.1e-58 228.8 201 60.7
BraA09t42243Z Brassica rapa HOM05D006960 ORTHO05D008699 5.3e-58 228.4 239 55.6
CAN.G1385.4 Capsicum annuum HOM05D006960 ORTHO05D008699 9.1e-58 227.6 195 63.6
Eucgr.E00049 Eucalyptus grandis HOM05D006960 ORTHO05D008699 1.2e-57 227.3 201 61.7
A09p69060 Brassica napus HOM05D006960 ORTHO05D008699 2.0e-57 226.5 215 59.5
BolC8t52877H Brassica oleracea HOM05D006960 ORTHO05D008699 2.0e-57 226.5 239 55.6
Manes.05G022300 Manihot esculenta HOM05D006960 ORTHO05D008699 2.0e-57 226.5 222 58.6
C08p53630 Brassica napus HOM05D006960 ORTHO05D008699 2.7e-57 226.1 215 59.5
Dinv22299 Davidia involucrata HOM05D006960 ORTHO05D008699 3.5e-57 225.7 188 67.0
Hund16718 Selenicereus undatus HOM05D006960 ORTHO05D008699 1.3e-56 223.8 193 63.7
HPP92_002925 Vanilla planifolia HOM05D006960 ORTHO05D008699 2.2e-56 223.0 152 75.7
PGR142G3971 Punica granatum HOM05D006960 ORTHO05D008699 2.9e-56 222.6 210 59.5
AT1G01290 Arabidopsis thaliana HOM05D006960 ORTHO05D008699 3.8e-56 222.2 261 51.7
CARHR001180 Cardamine hirsuta HOM05D006960 ORTHO05D008699 1.1e-55 220.7 253 51.4
unitig_899.g14796 Utricularia gibba HOM05D006960 ORTHO05D008699 1.1e-55 220.7 200 61.0
ATR0602G026 Amborella trichopoda HOM05D006960 ORTHO05D008699 1.9e-55 219.9 193 62.7
Thhalv10008544m.g Eutrema salsugineum HOM05D006960 ORTHO05D008699 1.9e-55 219.9 231 55.0
Sp1g01000 Schrenkiella parvula HOM05D006960 ORTHO05D008699 4.2e-55 218.8 245 53.5
AL1G11170 Arabidopsis lyrata HOM05D006960 ORTHO05D008699 1.6e-54 216.9 175 65.7
Carub.0001s0093 Capsella rubella HOM05D006960 ORTHO05D008699 3.6e-54 215.7 246 52.8
Aa31LG5G970 Aethionema arabicum HOM05D000451 ORTHO05D000351 1.2e-52 210.7 210 58.6
Mapoly0053s0024 Marchantia polymorpha HOM05D006960 ORTHO05D008699 1.0e-48 197.6 233 52.4
Pp3c20_11370 Physcomitrium patens HOM05D006960 ORTHO05D008699 2.1e-46 189.9 242 48.3
SMO351G0341 Selaginella moellendorffii HOM05D006960 ORTHO05D008699 8.8e-45 184.5 190 57.9
HPP92_028636 Vanilla planifolia HOM05D006960 ORTHO05D008699 4.7e-38 162.2 191 52.4
CBR_g23014 Chara braunii HOM05D006960 ORTHO05D008699 6.8e-37 158.3 154 55.8
MCO01G113 Micromonas commoda HOM05D006960 ORTHO05D008699 6.8e-37 158.3 161 55.9
Cre08.g361050 Chlamydomonas reinhardtii HOM05D006960 ORTHO05D008699 1.5e-36 157.1 154 55.2
CDE10G0916 Ceratophyllum demersum HOM05D000108 ORTHO05D001781 6.4e-35 151.8 112 68.8
CDE10G0236 Ceratophyllum demersum HOM05D006960 ORTHO05D008699 1.4e-34 150.6 214 44.4
AUR62014969 Chenopodium quinoa HOM05D006960 ORTHO05D008699 2.4e-34 149.8 201 46.3
AUR62023452 Chenopodium quinoa HOM05D000040 ORTHO05D000759 1.1e-31 141.0 180 49.4
VMungo0964G0001 Vigna mungo HOM05D006960 ORTHO05D008699 3.3e-31 139.4 152 48.0
CsaV3_7G025390 Cucumis sativus L. HOM05D006960 ORTHO05D008699 4.3e-31 139.0 160 50.6
FAN03G0019 Fragaria x ananassa HOM05D006960 ORTHO05D008699 6.0e-25 118.6 92 64.1
Cfa022703 Carpinus fangiana HOM05D006960 ORTHO05D008699 4.7e-22 109.0 162 44.4
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 1.2e-20 104.4 116 46.6
Cpa.g.sc96.27 Carica papaya HOM05D006960 ORTHO05D008699 2.9e-19 99.8 150 44.0
TAR636G2744 Trochodendron aralioides HOM05D006960 ORTHO05D008699 8.3e-19 98.2 86 60.5
PRCOL_00000953 Prasinoderma coloniale HOM05D006960 ORTHO05D008699 6.8e-13 78.6 219 31.1
CiPaw.01G076800 Carya illinoinensis HOM05D006960 ORTHO05D008699 4.1e-10 69.3 82 53.7
Medtr5g015730 Medicago truncatula HOM05D006960 ORTHO05D008699 5.6e-07 58.9 36 75.0


User provided reference genes

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