Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb080280 Zea mays HOM05D041475 ORTHO05D003305 3.2e-309 1064.3 565 100.0
Os04g0467100 Oryza sativa ssp. japonica HOM05D003025 ORTHO05D003305 1.3e-119 434.5 671 46.3
Zm00001eb015830 Zea mays HOM05D041475 ORTHO05D003305 1.1e-88 331.6 196 89.3
Zm00001eb424500 Zea mays HOM05D041475 ORTHO05D003305 2.8e-79 300.4 253 67.2
Os02g0582100 Oryza sativa ssp. japonica HOM05D003025 ORTHO05D003305 3.2e-38 164.1 519 33.1
Zm00001eb245390 Zea mays HOM05D003025 ORTHO05D003305 9.9e-32 142.5 530 32.3
Prupe.1G293500 Prunus persica HOM05D003025 ORTHO05D003305 1.1e-17 95.9 55 78.2
Lsat_1_v5_gn_8_37061 Lactuca sativa HOM05D003025 ORTHO05D003305 2.4e-17 94.7 107 53.3
Dinv15582 Davidia involucrata HOM05D003025 ORTHO05D003305 4.0e-17 94.0 80 67.5
Duzib251G0179 Durio zibethinus HOM05D003025 ORTHO05D003305 9.0e-17 92.8 96 54.2
Hma1.2p1_0428F.1_g150820 Hydrangea macrophylla HOM05D003025 ORTHO05D003305 9.0e-17 92.8 144 44.4
Lj2g0017874 Lotus japonicus HOM05D003025 ORTHO05D003305 1.5e-16 92.0 80 60.0
HanXRQChr08g0215591 Helianthus annuus HOM05D003025 ORTHO05D003305 2.0e-16 91.7 145 42.8
COL.COLO4_27800 Corchorus olitorius HOM05D003025 ORTHO05D003305 2.6e-16 91.3 96 49.0
HanXRQChr12g0365071 Helianthus annuus HOM05D003025 ORTHO05D003305 2.6e-16 91.3 54 75.9
ClCG05G023550 Citrullus lanatus HOM05D003025 ORTHO05D003305 3.4e-16 90.9 55 74.5
CsaV3_6G033910 Cucumis sativus L. HOM05D003025 ORTHO05D003305 4.4e-16 90.5 80 58.8
MELO3C011401.2 Cucumis melo HOM05D003025 ORTHO05D003305 5.8e-16 90.1 80 58.8
Gorai.013G097400 Gossypium raimondii HOM05D003025 ORTHO05D003305 5.8e-16 90.1 80 56.2
MD13G1056500 Malus domestica HOM05D003025 ORTHO05D003305 9.9e-16 89.4 55 76.4
CiPaw.05G121600 Carya illinoinensis HOM05D003025 ORTHO05D003305 1.3e-15 89.0 55 76.4
Sed0001557 Sechium edule HOM05D003025 ORTHO05D003305 1.3e-15 89.0 80 56.2
Peaxi162Scf00188g01025 Petunia axillaris HOM05D003025 ORTHO05D003305 2.2e-15 88.2 55 72.7
Potri.010G138100 Populus trichocarpa HOM05D003025 ORTHO05D003305 2.9e-15 87.8 80 56.2
Thecc.02G322700 Theobroma cacao HOM05D003025 ORTHO05D003305 3.8e-15 87.4 125 41.6
HPP92_015551 Vanilla planifolia HOM05D003025 ORTHO05D003305 4.9e-15 87.0 55 72.7
CSS0010260 Camellia sinensis var. sinensis HOM05D003025 ORTHO05D003305 6.4e-15 86.7 136 42.6
MD16G1055400 Malus domestica HOM05D003025 ORTHO05D003305 8.4e-15 86.3 55 74.5
CANSAT64G2528 Cannabis sativa HOM05D003025 ORTHO05D003305 1.1e-14 85.9 583 25.6
TAR622G0187 Trochodendron aralioides HOM05D003025 ORTHO05D003305 1.4e-14 85.5 212 37.3
Nitab4.5_0001071g0040 Nicotiana tabacum HOM05D003025 ORTHO05D003305 1.9e-14 85.1 80 56.2
Dinv34020 Davidia involucrata HOM05D003025 ORTHO05D003305 2.4e-14 84.7 139 48.9
Gohir.A12G159500 Gossypium hirsutum HOM05D003025 ORTHO05D003305 2.4e-14 84.7 55 69.1
Rhsim12G0071300 Rhododendron simsii HOM05D003025 ORTHO05D003305 2.4e-14 84.7 80 55.0
Sabra10G0106400 Salix brachista HOM05D003025 ORTHO05D003305 2.4e-14 84.7 80 70.0
AUR62003057 Chenopodium quinoa HOM05D003025 ORTHO05D003305 3.2e-14 84.3 55 69.1
AUR62007872 Chenopodium quinoa HOM05D003025 ORTHO05D003305 3.2e-14 84.3 55 69.1
MBI15_g31908_MAGBIO Magnolia biondii HOM05D003025 ORTHO05D003305 4.2e-14 84.0 218 33.9
Sabra08G0084400 Salix brachista HOM05D003025 ORTHO05D003305 4.2e-14 84.0 80 55.0
TWI79G0747 Tripterygium wilfordii HOM05D003025 ORTHO05D003305 4.2e-14 84.0 129 44.2
Actinidia07767 Actinidia chinensis HOM05D003025 ORTHO05D003305 5.4e-14 83.6 100 46.0
Lj6A773T133 Lonicera japonica HOM05D003025 ORTHO05D003305 7.1e-14 83.2 135 43.0
Lalb_Chr10g0099151 Lupinus albus HOM05D003025 ORTHO05D003305 7.1e-14 83.2 80 55.0
Gohir.D12G162800 Gossypium hirsutum HOM05D003025 ORTHO05D003305 9.3e-14 82.8 55 67.3
Gorai.008G175400 Gossypium raimondii HOM05D003025 ORTHO05D003305 9.3e-14 82.8 55 67.3
Lalb_Chr17g0341461 Lupinus albus HOM05D003025 ORTHO05D003305 9.3e-14 82.8 82 54.9
Solyc04g005290.3 Solanum lycopersicum HOM05D003025 ORTHO05D003305 9.3e-14 82.8 55 74.5
PGSC0003DMG400001936 Solanum tuberosum HOM05D003025 ORTHO05D003305 9.3e-14 82.8 55 74.5
vmacro01298 Vaccinium macrocarpon HOM05D003025 ORTHO05D003305 9.3e-14 82.8 55 69.1
Dinv38641 Davidia involucrata HOM05D003025 ORTHO05D003305 1.2e-13 82.4 119 42.9
PSO017G6048 Papaver somniferum HOM05D003025 ORTHO05D003305 1.2e-13 82.4 80 52.5
Gohir.A03G106600 Gossypium hirsutum HOM05D003025 ORTHO05D003305 2.1e-13 81.6 500 24.6
CARHR146220 Cardamine hirsuta HOM05D003025 ORTHO05D003305 2.7e-13 81.3 53 69.8
ClCG08G010610 Citrullus lanatus HOM05D003025 ORTHO05D003305 2.7e-13 81.3 250 32.0
Thhalv10004181m.g Eutrema salsugineum HOM05D003025 ORTHO05D003305 2.7e-13 81.3 53 69.8
Rhsim09G0122100 Rhododendron simsii HOM05D003025 ORTHO05D003305 2.7e-13 81.3 55 70.9
Sc04g0007330 Simmondsia chinensis HOM05D003025 ORTHO05D003305 2.7e-13 81.3 54 70.4
Manes.06G079500 Manihot esculenta HOM05D003025 ORTHO05D003305 3.5e-13 80.9 80 51.2
VMungo0251G3127 Vigna mungo HOM05D003025 ORTHO05D003305 3.5e-13 80.9 55 61.8
Gohir.D02G131800 Gossypium hirsutum HOM05D003025 ORTHO05D003305 6.0e-13 80.1 508 24.2
CDE10G0152 Ceratophyllum demersum HOM05D003025 ORTHO05D003305 7.8e-13 79.7 124 39.5
THA.LOC104805213 Tarenaya hassleriana HOM05D003025 ORTHO05D003305 7.8e-13 79.7 80 50.0
GSVIVG01008155001 Vitis vinifera HOM05D003025 ORTHO05D003305 7.8e-13 79.7 117 43.6
Actinidia19904 Actinidia chinensis HOM05D003025 ORTHO05D003305 1.0e-12 79.3 236 33.9
CDE10G0686 Ceratophyllum demersum HOM05D003025 ORTHO05D003305 1.0e-12 79.3 116 47.4
Lj3A1027T87 Lonicera japonica HOM05D003025 ORTHO05D003305 1.0e-12 79.3 92 55.4
TAR374G0527 Trochodendron aralioides HOM05D003025 ORTHO05D003305 1.0e-12 79.3 215 36.7
CiPaw.06G095000 Carya illinoinensis HOM05D003025 ORTHO05D003305 1.7e-12 78.6 124 42.7
FAN13G2721 Fragaria x ananassa HOM05D003025 ORTHO05D003305 1.7e-12 78.6 76 48.7
THA.LOC104801838 Tarenaya hassleriana HOM05D003025 ORTHO05D003305 1.7e-12 78.6 55 61.8
Gorai.005G147700 Gossypium raimondii HOM05D003025 ORTHO05D003305 3.0e-12 77.8 508 24.0
PGR102G2660 Punica granatum HOM05D003025 ORTHO05D003305 3.0e-12 77.8 215 33.0
Migut.L01161 Erythranthe guttata HOM05D003025 ORTHO05D003305 3.9e-12 77.4 140 35.0
unitig_8.g3969 Utricularia gibba HOM05D003025 ORTHO05D003305 3.9e-12 77.4 80 52.5
FAN18G0971 Fragaria x ananassa HOM05D003025 ORTHO05D003305 5.1e-12 77.0 76 48.7
Sed0017206 Sechium edule HOM05D003025 ORTHO05D003305 5.1e-12 77.0 55 63.6
MD06G1205800 Malus domestica HOM05D003025 ORTHO05D003305 6.6e-12 76.6 55 61.8
TWI31G1177 Tripterygium wilfordii HOM05D003025 ORTHO05D003305 6.6e-12 76.6 400 27.0
HPP92_018243 Vanilla planifolia HOM05D003025 ORTHO05D003305 6.6e-12 76.6 55 63.6
Aqoxy3G03750 Aquilegia oxysepala HOM05D003025 ORTHO05D003305 8.7e-12 76.3 222 36.5
Phvul.003G280500 Phaseolus vulgaris HOM05D003025 ORTHO05D003305 8.7e-12 76.3 55 58.2
Sopen05g006590 Solanum pennellii HOM05D003025 ORTHO05D003305 8.7e-12 76.3 234 35.0
Sc11g0002650 Simmondsia chinensis HOM05D003025 ORTHO05D003305 1.1e-11 75.9 52 65.4
vmacro10474 Vaccinium macrocarpon HOM05D003025 ORTHO05D003305 1.1e-11 75.9 140 37.9
Cc11_g11550 Coffea canephora HOM05D003025 ORTHO05D003305 1.9e-11 75.1 189 34.9
Nitab4.5_0002491g0030 Nicotiana tabacum HOM05D003025 ORTHO05D003305 1.9e-11 75.1 95 46.3
FvH4_5g13400 Fragaria vesca HOM05D003025 ORTHO05D003305 2.5e-11 74.7 76 47.4
Gohir.A13G088100 Gossypium hirsutum HOM05D003025 ORTHO05D003305 2.5e-11 74.7 259 31.3
Nn4g23540 Nelumbo nucifera HOM05D003025 ORTHO05D003305 2.5e-11 74.7 194 37.1
Prupe.5G210100 Prunus persica HOM05D003025 ORTHO05D003305 2.5e-11 74.7 56 64.3
Eucgr.G02421 Eucalyptus grandis HOM05D003025 ORTHO05D003305 3.3e-11 74.3 275 30.5
PGSC0003DMG400025716 Solanum tuberosum HOM05D003025 ORTHO05D003305 3.3e-11 74.3 236 34.7
TPR.G38556 Trifolium pratense HOM05D003025 ORTHO05D003305 3.3e-11 74.3 235 33.6
BcaB07g30644 Brassica carinata HOM05D003025 ORTHO05D003305 4.3e-11 73.9 54 63.0
Gohir.D13G085500 Gossypium hirsutum HOM05D003025 ORTHO05D003305 4.3e-11 73.9 222 32.0
Potri.008G111800 Populus trichocarpa HOM05D003025 ORTHO05D003305 4.3e-11 73.9 246 30.5
VMungo1215G0401 Vigna mungo HOM05D003025 ORTHO05D003305 4.3e-11 73.9 247 32.8
RcHm_v2.0_Chr7g0183741 Rosa chinensis HOM05D003025 ORTHO05D003305 5.6e-11 73.6 55 60.0
THA.LOC104824052 Tarenaya hassleriana HOM05D003025 ORTHO05D003305 5.6e-11 73.6 224 29.9
AL5G13600 Arabidopsis lyrata HOM05D003025 ORTHO05D003305 7.3e-11 73.2 239 35.1
BcaC06g31142 Brassica carinata HOM05D003025 ORTHO05D003305 7.3e-11 73.2 53 64.2
A06p42840 Brassica napus HOM05D003025 ORTHO05D003305 7.3e-11 73.2 80 50.0
BraA06t27196Z Brassica rapa HOM05D003025 ORTHO05D003305 7.3e-11 73.2 80 50.0
Psat2g085960 Pisum sativum HOM05D003025 ORTHO05D003305 7.3e-11 73.2 252 34.5
GSVIVG01010102001 Vitis vinifera HOM05D003025 ORTHO05D003305 9.6e-11 72.8 215 32.6
Glyma.02G122700 Glycine max HOM05D003025 ORTHO05D003305 1.3e-10 72.4 238 31.1
MSTRG.781 Avicennia marina HOM05D003025 ORTHO05D003305 1.6e-10 72.0 149 37.6
Medtr5g047930 Medicago truncatula HOM05D003025 ORTHO05D003305 1.6e-10 72.0 238 33.6
CsaV3_5G033470 Cucumis sativus L. HOM05D003025 ORTHO05D003305 2.1e-10 71.6 239 30.5
HanXRQChr17g0568661 Helianthus annuus HOM05D003025 ORTHO05D003305 2.1e-10 71.6 245 29.0
Oeu062245.1 Olea europaea HOM05D003025 ORTHO05D003305 2.1e-10 71.6 156 32.1
Hund09959 Selenicereus undatus HOM05D003025 ORTHO05D003305 2.1e-10 71.6 57 57.9
Actinidia31928 Actinidia chinensis HOM05D003025 ORTHO05D003305 2.8e-10 71.2 221 33.5
PSO063G1603 Papaver somniferum HOM05D003025 ORTHO05D003305 2.8e-10 71.2 231 32.9
Hma1.2p1_0060F.1_g032730 Hydrangea macrophylla HOM05D003025 ORTHO05D003305 3.6e-10 70.9 55 60.0
Manes.14G090300 Manihot esculenta HOM05D003025 ORTHO05D003305 3.6e-10 70.9 280 29.3
FAN07G1412 Fragaria x ananassa HOM05D003025 ORTHO05D003305 4.8e-10 70.5 56 67.9
unitig_52.g17161 Utricularia gibba HOM05D003025 ORTHO05D003305 4.8e-10 70.5 55 60.0
Oeu021806.1 Olea europaea HOM05D003025 ORTHO05D003305 6.2e-10 70.1 56 62.5
FvH4_4g29290 Fragaria vesca HOM05D003025 ORTHO05D003305 1.1e-09 69.3 56 66.1
FAN17G1716 Fragaria x ananassa HOM05D003025 ORTHO05D003305 1.1e-09 69.3 56 66.1
FAN22G0063 Fragaria x ananassa HOM05D003025 ORTHO05D003305 1.1e-09 69.3 56 66.1
SEGI_24332 Sequoiadendron giganteum HOM05D066507 ORTHO05D003305 1.1e-09 69.3 51 62.7
Duzib248G1661 Durio zibethinus HOM05D003025 ORTHO05D003305 1.4e-09 68.9 501 25.3
FAN12G3072 Fragaria x ananassa HOM05D003025 ORTHO05D003305 1.4e-09 68.9 56 66.1
HanXRQChr15g0475601 Helianthus annuus HOM05D003025 ORTHO05D003305 1.4e-09 68.9 110 43.6
Phvul.003G038300 Phaseolus vulgaris HOM05D003025 ORTHO05D003305 1.8e-09 68.6 229 31.4
SGA_v2.0_scaffold59G20657 Striga asiatica HOM05D003025 ORTHO05D003305 1.8e-09 68.6 146 34.9
Carub.0001s1338 Capsella rubella HOM05D003025 ORTHO05D003305 2.4e-09 68.2 57 52.6
Glyma.01G064900 Glycine max HOM05D003025 ORTHO05D003305 2.4e-09 68.2 237 30.0
arahy.Tifrunner.gnm1.ann1.161SS5 Arachis hypogaea HOM05D003025 ORTHO05D003305 3.1e-09 67.8 248 31.0
RcHm_v2.0_Chr4g0437341 Rosa chinensis HOM05D003025 ORTHO05D003305 3.1e-09 67.8 56 64.3
Ciclev10021731m.g Citrus clementina HOM05D003025 ORTHO05D003305 4.0e-09 67.4 54 53.7
ECA233G1104 Erigeron canadensis HOM05D003025 ORTHO05D003305 4.0e-09 67.4 79 59.5
Lalb_Chr04g0255461 Lupinus albus HOM05D003025 ORTHO05D003305 4.0e-09 67.4 222 30.6
Oeu024157.1 Olea europaea HOM05D003025 ORTHO05D003305 4.0e-09 67.4 202 32.2
unitig_22.g5562 Utricularia gibba HOM05D003025 ORTHO05D003305 4.0e-09 67.4 178 33.7
Ca_05068_v3 Cicer arietinum L. HOM05D003025 ORTHO05D003305 6.9e-09 66.6 229 33.6
Sopen04g001270 Solanum pennellii HOM05D003025 ORTHO05D003305 6.9e-09 66.6 234 29.1
PSO782G5508 Papaver somniferum HOM05D003025 ORTHO05D003305 1.2e-08 65.9 289 28.0
Sp2g14630 Schrenkiella parvula HOM05D003025 ORTHO05D003305 1.2e-08 65.9 230 34.8
Sed0016639 Sechium edule HOM05D003025 ORTHO05D003305 1.2e-08 65.9 227 31.3
Aa31LG2G6910 Aethionema arabicum HOM05D003025 ORTHO05D003305 1.5e-08 65.5 223 34.1
BcaB02g06463 Brassica carinata HOM05D003025 ORTHO05D003305 1.5e-08 65.5 55 56.4
C05p11460 Brassica napus HOM05D003025 ORTHO05D003305 1.5e-08 65.5 55 54.5
DCAR_030058 Daucus carota HOM05D003025 ORTHO05D003305 1.5e-08 65.5 541 24.2
Lsat_1_v5_gn_3_105000 Lactuca sativa HOM05D003025 ORTHO05D003305 2.0e-08 65.1 253 27.3
MBI14_g31150_MAGBIO Magnolia biondii HOM05D003025 ORTHO05D003305 2.6e-08 64.7 241 33.6
PSO478G4016 Papaver somniferum HOM05D003025 ORTHO05D003305 3.4e-08 64.3 214 29.4
ATR0691G160 Amborella trichopoda HOM05D003025 ORTHO05D003305 4.5e-08 63.9 227 34.8
arahy.Tifrunner.gnm1.ann1.8UFH9N Arachis hypogaea HOM05D003025 ORTHO05D003305 4.5e-08 63.9 222 34.7
Oeu003749.3 Olea europaea HOM05D003025 ORTHO05D003305 4.5e-08 63.9 209 29.7
MSTRG.7727 Avicennia marina HOM05D003025 ORTHO05D003305 5.8e-08 63.5 240 29.2
C09p31660 Brassica napus HOM05D003025 ORTHO05D003305 7.6e-08 63.2 212 31.1
BolC9t56021H Brassica oleracea HOM05D003025 ORTHO05D003305 7.6e-08 63.2 212 31.1
Duzib205G1035 Durio zibethinus HOM05D003025 ORTHO05D003305 7.6e-08 63.2 50 54.0
SGA_v2.0_scaffold287G47189 Striga asiatica HOM05D003025 ORTHO05D003305 9.9e-08 62.8 135 34.8
CANSAT80G0192 Cannabis sativa HOM05D003025 ORTHO05D003305 1.3e-07 62.4 54 57.4
AT2G03810 Arabidopsis thaliana HOM05D003025 ORTHO05D003305 2.2e-07 61.6 229 34.5
MD14G1216700 Malus domestica HOM05D003025 ORTHO05D003305 2.9e-07 61.2 211 28.0
Carub.0005s0297 Capsella rubella HOM05D003025 ORTHO05D003305 4.9e-07 60.5 427 27.6
unitig_21.g20865 Utricularia gibba HOM05D001307 ORTHO05D001158 1.1e-06 59.3 55 54.5
Ah.03g138600 Amaranthus hybridus HOM05D003025 ORTHO05D003305 1.4e-06 58.9 494 23.7
Sed0026748 Sechium edule HOM05D025218 ORTHO05D025068 1.4e-06 58.9 54 51.9
SGA_v2.0_scaffold16G07826 Striga asiatica HOM05D003025 ORTHO05D003305 1.4e-06 58.9 489 25.8
Thecc.03G108500 Theobroma cacao HOM05D003025 ORTHO05D003305 1.4e-06 58.9 49 51.0
BcaC05g25272 Brassica carinata HOM05D003025 ORTHO05D003305 1.9e-06 58.5 45 57.8
Nitab4.5_0000027g0390 Nicotiana tabacum HOM05D003025 ORTHO05D003305 1.9e-06 58.5 36 63.9
Nitab4.5_0009153g0010 Nicotiana tabacum HOM05D003025 ORTHO05D003305 1.9e-06 58.5 36 63.9
CDE05G3645 Ceratophyllum demersum HOM05D003025 ORTHO05D003305 2.4e-06 58.2 80 42.5
C02p51790 Brassica napus HOM05D003025 ORTHO05D003305 3.2e-06 57.8 220 29.5
CDE02G2647 Ceratophyllum demersum HOM05D003025 ORTHO05D003305 4.2e-06 57.4 80 42.5
Gorai.001G067100 Gossypium raimondii HOM05D003025 ORTHO05D003305 4.2e-06 57.4 180 32.2
EL10Ac6g14672 Beta vulgaris HOM05D003025 ORTHO05D003305 5.4e-06 57.0 225 32.0
Cc04_g08270 Coffea canephora HOM05D003025 ORTHO05D003305 5.4e-06 57.0 75 44.0
PGSC0003DMG404024620 Solanum tuberosum HOM05D017485 ORTHO05D020287 5.4e-06 57.0 56 55.4
BcaC04g21446 Brassica carinata HOM05D003025 ORTHO05D003305 9.3e-06 56.2 412 25.2
BolC7t43953H Brassica oleracea HOM05D003025 ORTHO05D003305 9.3e-06 56.2 239 26.8
Migut.E00253 Erythranthe guttata HOM05D003025 ORTHO05D003305 9.3e-06 56.2 144 33.3


User provided reference genes

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