Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb078140 Zea mays HOM05D004589 ORTHO05D005848 0.0e+00 2327.0 1179 100.0
Os04g0502200 Oryza sativa ssp. japonica HOM05D004589 ORTHO05D005848 0.0e+00 2062.3 1203 87.3
Dinv03411 Davidia involucrata HOM05D004589 ORTHO05D005848 0.0e+00 1602.0 1207 67.2
Aqoxy7G03529 Aquilegia oxysepala HOM05D004589 ORTHO05D005848 0.0e+00 1597.0 1207 67.4
Actinidia23085 Actinidia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1582.8 1208 66.9
Thecc.09G019500 Theobroma cacao HOM05D004589 ORTHO05D005848 0.0e+00 1580.1 1204 66.4
Nn2g12251 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1578.9 1208 67.0
CSS0038938 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 0.0e+00 1578.5 1203 66.0
COL.COLO4_18916 Corchorus olitorius HOM05D004589 ORTHO05D005848 0.0e+00 1575.8 1200 66.2
Duzib150G1268 Durio zibethinus HOM05D004589 ORTHO05D005848 0.0e+00 1575.8 1204 66.1
Haze_21457 Corylus avellana HOM05D004589 ORTHO05D005848 0.0e+00 1575.1 1205 65.8
PSO210G3160 Papaver somniferum HOM05D004589 ORTHO05D005848 0.0e+00 1572.0 1214 66.1
Cfa013100 Carpinus fangiana HOM05D004589 ORTHO05D005848 0.0e+00 1564.3 1205 65.5
PGR044G0530 Punica granatum HOM05D004589 ORTHO05D005848 0.0e+00 1553.1 1200 65.6
MSTRG.1735 Avicennia marina HOM05D004589 ORTHO05D005848 0.0e+00 1552.3 1206 65.8
MD15G1131100 Malus domestica HOM05D004589 ORTHO05D005848 0.0e+00 1552.0 1209 65.4
Nn8g39722 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1550.4 1207 65.9
Ciclev10007276m.g Citrus clementina HOM05D004589 ORTHO05D005848 0.0e+00 1546.9 1203 65.8
FvH4_2g28290 Fragaria vesca HOM05D004589 ORTHO05D005848 0.0e+00 1546.6 1204 65.2
RhsimUnG0052600 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1545.8 1293 62.3
RhsimUnG0165300 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1545.8 1293 62.3
Oeu056766.2 Olea europaea HOM05D004589 ORTHO05D005848 0.0e+00 1545.0 1213 65.0
TWI63G0229 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 0.0e+00 1545.0 1203 65.0
RcHm_v2.0_Chr6g0297201 Rosa chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1544.3 1204 65.1
Lj5g0022357 Lotus japonicus HOM05D004589 ORTHO05D005848 0.0e+00 1543.1 1206 65.3
Cc08_g00190 Coffea canephora HOM05D004589 ORTHO05D005848 0.0e+00 1542.3 1207 65.2
Gohir.A07G030400 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1539.6 1203 65.1
MELO3C016987.2 Cucumis melo HOM05D004589 ORTHO05D005848 0.0e+00 1536.9 1200 64.7
FAN24G2656 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1536.5 1220 64.4
Sed0004204 Sechium edule HOM05D004589 ORTHO05D005848 0.0e+00 1536.2 1202 64.6
Gorai.001G035900 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1535.4 1203 65.0
QL02p020149 Quercus lobata HOM05D004589 ORTHO05D005848 0.0e+00 1533.9 1295 60.8
ClCG05G016580 Citrullus lanatus HOM05D004589 ORTHO05D005848 0.0e+00 1532.7 1208 64.3
Glyma.17G215700 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1531.9 1210 64.8
Migut.E01823 Erythranthe guttata HOM05D004589 ORTHO05D005848 0.0e+00 1531.5 1203 64.7
Sc23g0006530 Simmondsia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1530.4 1193 65.2
Eucgr.C02726 Eucalyptus grandis HOM05D004589 ORTHO05D005848 0.0e+00 1530.0 1207 64.3
FAN15G2875 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1528.8 1220 64.4
VMungo0647G1846 Vigna mungo HOM05D004589 ORTHO05D005848 0.0e+00 1527.3 1203 64.8
Ca_13043_v3 Cicer arietinum L. HOM05D004589 ORTHO05D005848 0.0e+00 1526.9 1202 64.7
Thhalv10012483m.g Eutrema salsugineum HOM05D004589 ORTHO05D005848 0.0e+00 1524.6 1198 65.5
Psat6g028520 Pisum sativum HOM05D004589 ORTHO05D005848 0.0e+00 1524.6 1200 64.8
Lj8A732G29 Lonicera japonica HOM05D004589 ORTHO05D005848 0.0e+00 1523.8 1286 61.5
A10p26640 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1523.5 1196 65.3
Glyma.14G112200 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1523.5 1205 64.7
BraA10t44722Z Brassica rapa HOM05D004589 ORTHO05D005848 0.0e+00 1523.1 1195 65.3
BolC9t59402H Brassica oleracea HOM05D004589 ORTHO05D005848 0.0e+00 1522.7 1192 65.4
Medtr1g012980 Medicago truncatula HOM05D004589 ORTHO05D005848 0.0e+00 1521.9 1197 64.4
Carub.0006s0955 Capsella rubella HOM05D004589 ORTHO05D005848 0.0e+00 1521.5 1201 65.0
C09p65810 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1520.8 1192 65.3
Phvul.001G047300 Phaseolus vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1520.4 1202 64.3
Sp6g32450 Schrenkiella parvula HOM05D004589 ORTHO05D005848 0.0e+00 1519.6 1198 65.0
Lalb_Chr11g0075481 Lupinus albus HOM05D004589 ORTHO05D005848 0.0e+00 1518.1 1206 64.8
ATR0629G049 Amborella trichopoda HOM05D004589 ORTHO05D005848 0.0e+00 1516.5 1215 64.3
AL6G21660 Arabidopsis lyrata HOM05D004589 ORTHO05D005848 0.0e+00 1515.7 1201 64.9
Nitab4.5_0002503g0050 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1515.4 1214 64.4
Potri.018G022500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1513.8 1198 64.0
EL10Ac2g04152 Beta vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1511.9 1197 63.7
FAN27G1181 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1511.9 1220 63.6
AUR62012448 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1510.0 1200 64.0
SGA_v2.0_scaffold85G26586 Striga asiatica HOM05D004589 ORTHO05D005848 0.0e+00 1509.6 1200 64.4
THA.LOC104799036 Tarenaya hassleriana HOM05D004589 ORTHO05D005848 0.0e+00 1509.2 1196 65.1
arahy.Tifrunner.gnm1.ann1.JQP3NY Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1508.4 1204 63.7
Solyc06g065840.3 Solanum lycopersicum HOM05D004589 ORTHO05D005848 0.0e+00 1507.3 1192 64.5
AT5G11040 Arabidopsis thaliana HOM05D004589 ORTHO05D005848 0.0e+00 1506.9 1202 64.6
arahy.Tifrunner.gnm1.ann1.PKKG09 Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1506.5 1204 63.9
Sopen06g024330 Solanum pennellii HOM05D004589 ORTHO05D005848 0.0e+00 1505.0 1192 64.4
Potri.006G259500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1504.2 1198 63.9
Ah.16g104820 Amaranthus hybridus HOM05D004589 ORTHO05D005848 0.0e+00 1503.8 1200 64.1
CANSAT11G1771 Cannabis sativa HOM05D004589 ORTHO05D005848 0.0e+00 1500.7 1201 64.1
CAN.G199.72 Capsicum annuum HOM05D004589 ORTHO05D005848 0.0e+00 1497.6 1192 64.4
CDE05G2463 Ceratophyllum demersum HOM05D004589 ORTHO05D005848 0.0e+00 1495.3 1216 62.9
AUR62031571 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1494.9 1200 63.9
ECA246G2532 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1492.6 1206 62.6
Peaxi162Scf00430g00220 Petunia axillaris HOM05D004589 ORTHO05D005848 0.0e+00 1492.6 1192 64.1
Aa31LG3G16090 Aethionema arabicum HOM05D004589 ORTHO05D005848 0.0e+00 1492.2 1194 63.9
HanXRQChr16g0511131 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1484.5 1184 64.0
Nitab4.5_0003811g0060 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1484.2 1227 63.0
CiPaw.08G008300 Carya illinoinensis HOM05D004589 ORTHO05D005848 0.0e+00 1474.1 1129 66.2
Gohir.D06G102200 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1458.4 1204 62.5
vmacro22576 Vaccinium macrocarpon HOM05D004589 ORTHO05D005848 0.0e+00 1456.4 1346 57.9
Lsat_1_v5_gn_6_115440 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1453.0 1183 63.0
Manes.16G126200 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1432.2 1204 61.0
Atru.chr7.2502 Acer truncatum HOM05D004589 ORTHO05D005848 0.0e+00 1423.7 1097 66.2
BcaC04g19264 Brassica carinata HOM05D004589 ORTHO05D005848 0.0e+00 1422.1 1197 62.3
GSVIVG01035919001 Vitis vinifera HOM05D004589 ORTHO05D005848 0.0e+00 1421.8 1186 62.4
DCAR_021911 Daucus carota HOM05D004589 ORTHO05D005848 0.0e+00 1405.2 1209 60.3
HanXRQChr01g0030641 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1363.6 1191 58.4
Lsat_1_v5_gn_1_43861 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1340.9 1188 58.3
CsaV3_4G036860 Cucumis sativus L. HOM05D004589 ORTHO05D005848 0.0e+00 1332.8 1039 65.9
Gohir.A06G100000 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1332.4 1048 65.2
Gorai.010G117200 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1329.7 1045 65.3
Manes.03G011700 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1286.6 1018 64.4
TAR383G0245 Trochodendron aralioides HOM05D004589 ORTHO05D005848 0.0e+00 1270.8 1025 63.3
Prupe.1G486400 Prunus persica HOM05D004589 ORTHO05D005848 0.0e+00 1263.4 981 66.1
AagrBONN_evm.TU.Sc2ySwM_368.2742 Anthoceros agrestis HOM05D004589 ORTHO05D005848 0.0e+00 1255.4 1212 55.8
FAN20G1713 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1253.8 982 65.4
CARHR202250 Cardamine hirsuta HOM05D004589 ORTHO05D005848 0.0e+00 1250.7 988 65.3
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1211.4 1047 58.9
Mapoly0001s0490 Marchantia polymorpha HOM05D004589 ORTHO05D005848 0.0e+00 1167.9 1235 52.2
Hma1.2p1_0167F.1_g073640 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 0.0e+00 1160.6 901 65.8
Hund04463 Selenicereus undatus HOM05D004589 ORTHO05D005848 0.0e+00 1153.3 934 63.4
HPP92_020312 Vanilla planifolia HOM05D004589 ORTHO05D005848 0.0e+00 1151.0 903 65.6
Gohir.D07G034300 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1140.6 819 68.6
unitig_32.g11112 Utricularia gibba HOM05D004589 ORTHO05D005848 0.0e+00 1078.5 871 63.0
Pp3c22_21520 Physcomitrium patens HOM05D004589 ORTHO05D005848 4.2e-303 1045.0 1212 47.9
Pp3c19_10170 Physcomitrium patens HOM05D004589 ORTHO05D005848 5.9e-297 1024.6 1212 47.2
CBR_g36903 Chara braunii HOM05D004589 ORTHO05D005848 7.8e-265 917.9 1344 42.9
SMO364G0672 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 4.3e-263 912.1 1153 44.5
SMO199G0047 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 5.3e-237 825.5 1181 41.7
SMO361G0208 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.1e-221 774.6 1127 41.3
Actinidia14103 Actinidia chinensis HOM05D004589 ORTHO05D005848 2.3e-208 730.3 520 70.8
TPR.G40835 Trifolium pratense HOM05D004589 ORTHO05D005848 4.1e-173 613.2 425 72.2
HPP92_024788 Vanilla planifolia HOM05D004589 ORTHO05D005848 1.0e-147 528.9 732 43.7
SEGI_04045 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 1.9e-125 454.9 324 68.8
Zm00001eb426010 Zea mays HOM05D004589 ORTHO05D005848 2.0e-119 434.9 252 87.3
Cpa.g.sc187.29 Carica papaya HOM05D004589 ORTHO05D005848 3.4e-119 434.1 307 67.8
TPR.G38939 Trifolium pratense HOM05D004589 ORTHO05D005848 2.2e-118 431.4 325 64.3
arahy.Tifrunner.gnm1.ann1.X695T9 Arachis hypogaea HOM05D004589 ORTHO05D005848 2.7e-116 424.5 476 50.8
TPR.G38909 Trifolium pratense HOM05D004589 ORTHO05D005848 7.9e-116 422.9 430 53.0
arahy.Tifrunner.gnm1.ann1.3DY4JU Arachis hypogaea HOM05D004589 ORTHO05D005848 9.4e-101 372.9 329 59.9
Gohir.D07G034250 Gossypium hirsutum HOM05D004589 ORTHO05D005848 4.3e-98 364.0 349 56.7
Hma1.2p1_0167F.1_g073630 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 1.1e-96 359.4 293 62.1
HPP92_024789 Vanilla planifolia HOM05D004589 ORTHO05D005848 1.1e-93 349.4 257 70.4
SEGI_21363 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 5.7e-90 337.0 363 51.0
unitig_32.g11113 Utricularia gibba HOM05D004589 ORTHO05D005848 8.2e-89 333.2 313 57.2
AagrBONN_evm.TU.Sc2ySwM_368.2737 Anthoceros agrestis HOM05D004589 ORTHO05D005848 3.6e-84 317.8 305 52.5
Zm00001eb426000 Zea mays HOM05D004589 ORTHO05D005848 2.0e-63 248.8 150 89.3
Medtr7g069440 Medicago truncatula HOM05D004589 ORTHO05D005848 3.5e-63 248.1 391 39.9
TAR383G0934 Trochodendron aralioides HOM05D004589 ORTHO05D005848 6.6e-54 217.2 163 66.3
SMO361G0808 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 2.2e-41 175.6 275 40.4
arahy.Tifrunner.gnm1.ann1.6TA6W9 Arachis hypogaea HOM05D004589 ORTHO05D005848 3.7e-41 174.9 164 53.7
Cre07.g316100 Chlamydomonas reinhardtii HOM05D004589 ORTHO05D005848 4.9e-41 174.5 728 25.7
HPP92_024790 Vanilla planifolia HOM05D004589 ORTHO05D005848 4.9e-41 174.5 138 55.8
Cpa.g.sc187.28 Carica papaya HOM05D004589 ORTHO05D005848 2.1e-39 169.1 117 66.7
CSS0039966 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 2.7e-39 168.7 139 63.3
HPP92_020311 Vanilla planifolia HOM05D004589 ORTHO05D005848 1.4e-35 156.4 182 48.4
MD08G1153900 Malus domestica HOM05D004589 ORTHO05D005848 6.8e-35 154.1 119 60.5
Nn2g16054 Nelumbo nucifera HOM05D004589 ORTHO05D005848 1.3e-30 139.8 83 83.1
TWI34G0107 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 5.8e-26 124.4 161 45.3
arahy.Tifrunner.gnm1.ann1.6PY749 Arachis hypogaea HOM05D004589 ORTHO05D005848 1.0e-22 113.6 164 39.6
SMO164G0067 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 2.9e-17 95.5 215 34.0
SEGI_40067 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 8.4e-17 94.0 78 53.8
Atru.chr7.2501 Acer truncatum HOM05D004589 ORTHO05D005848 5.4e-16 91.3 59 71.2
RcHm_v2.0_Chr2g0096161 Rosa chinensis HOM05D004589 ORTHO05D005848 8.1e-12 77.4 47 70.2
A02p00800 Brassica napus HOM05D004589 ORTHO05D023960 4.5e-10 71.6 76 55.3
C02p04820 Brassica napus HOM05D004589 ORTHO05D023960 5.8e-10 71.2 70 61.4
BolC2t06439H Brassica oleracea HOM05D004589 ORTHO05D023960 5.8e-10 71.2 70 61.4
Sp3g28070 Schrenkiella parvula HOM05D004589 ORTHO05D005848 1.1e-08 67.0 63 50.8
SMO364G0797 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 4.2e-08 65.1 81 43.2
GSVIVG01037947001 Vitis vinifera HOM05D004589 ORTHO05D005848 1.6e-07 63.2 39 69.2
Sabra19G0134500 Salix brachista HOM05D001978 ORTHO05D000005 3.0e-06 58.9 91 40.7


User provided reference genes

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