Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb078060 Zea mays HOM05D006473 ORTHO05D008108 7.1e-93 344.0 181 100.0
Os04g0504200 Oryza sativa ssp. japonica HOM05D006473 ORTHO05D008108 4.0e-51 205.3 193 67.9
Nn7g38339 Nelumbo nucifera HOM05D006473 ORTHO05D008108 1.3e-14 84.0 49 81.6
TAR626G1390 Trochodendron aralioides HOM05D006473 ORTHO05D008108 8.6e-14 81.3 51 78.4
Aqoxy5G02466 Aquilegia oxysepala HOM05D006473 ORTHO05D008108 1.5e-13 80.5 155 37.4
TAR626G1015 Trochodendron aralioides HOM05D006473 ORTHO05D008108 4.3e-13 79.0 51 76.5
CDE05G3197 Ceratophyllum demersum HOM05D006473 ORTHO05D008108 5.6e-13 78.6 46 78.3
CDE11G0296 Ceratophyllum demersum HOM05D006473 ORTHO05D008108 2.8e-12 76.3 45 75.6
MBI02_g01129_MAGBIO Magnolia biondii HOM05D006464 ORTHO05D007923 8.1e-12 74.7 40 85.0
HPP92_016064 Vanilla planifolia HOM05D006473 ORTHO05D008108 1.1e-11 74.3 153 40.5
PSO675G8005 Papaver somniferum HOM05D006473 ORTHO05D008108 4.0e-11 72.4 163 34.4
PGR031G0759 Punica granatum HOM05D006473 ORTHO05D008108 5.2e-11 72.0 159 37.7
ClCG11G016910 Citrullus lanatus HOM05D006473 ORTHO05D008108 8.9e-11 71.2 175 38.3
VMungo0540G0033 Vigna mungo HOM05D006473 ORTHO05D008108 1.5e-10 70.5 165 33.9
Migut.H01260 Erythranthe guttata HOM05D006473 ORTHO05D008108 2.0e-10 70.1 157 34.4
Duzib138G0874 Durio zibethinus HOM05D006473 ORTHO05D008108 2.6e-10 69.7 162 35.8
EL10Ac6g15336 Beta vulgaris HOM05D006473 ORTHO05D008108 4.4e-10 68.9 45 71.1
Sabra06G0006200 Salix brachista HOM05D006473 ORTHO05D008108 4.4e-10 68.9 174 33.9
Sed0027280 Sechium edule HOM05D006473 ORTHO05D008108 9.9e-10 67.8 153 35.9
DCAR_029496 Daucus carota HOM05D006473 ORTHO05D008108 1.3e-09 67.4 62 56.5
Atru.chr8.1011 Acer truncatum HOM05D006473 ORTHO05D008108 1.7e-09 67.0 48 66.7
CANSAT64G1482 Cannabis sativa HOM05D006473 ORTHO05D008108 2.2e-09 66.6 64 60.9
Nitab4.5_0002292g0030 Nicotiana tabacum HOM05D006473 ORTHO05D008108 2.2e-09 66.6 153 35.9
Potri.006G008000 Populus trichocarpa HOM05D006473 ORTHO05D008108 2.2e-09 66.6 167 35.3
ATR0763G071 Amborella trichopoda HOM05D006473 ORTHO05D008108 2.9e-09 66.2 142 33.1
arahy.Tifrunner.gnm1.ann1.ITU10B Arachis hypogaea HOM05D006473 ORTHO05D008108 2.9e-09 66.2 168 36.9
CsaV3_4G032520 Cucumis sativus L. HOM05D006473 ORTHO05D008108 2.9e-09 66.2 168 39.3
SGA_v2.0_scaffold49G18372 Striga asiatica HOM05D006473 ORTHO05D008108 2.9e-09 66.2 136 35.3
Cpa.g.sc8.265 Carica papaya HOM05D006473 ORTHO05D008108 4.9e-09 65.5 43 69.8
Gohir.D11G162300 Gossypium hirsutum HOM05D006473 ORTHO05D008108 6.4e-09 65.1 48 66.7
Gorai.007G172600 Gossypium raimondii HOM05D006473 ORTHO05D008108 6.4e-09 65.1 48 66.7
Prupe.3G184300 Prunus persica HOM05D006473 ORTHO05D008108 6.4e-09 65.1 52 63.5
QL10p019398 Quercus lobata HOM05D006473 ORTHO05D008108 6.4e-09 65.1 82 48.8
TWI34G1686 Tripterygium wilfordii HOM05D006473 ORTHO05D008108 6.4e-09 65.1 152 35.5
arahy.Tifrunner.gnm1.ann1.UN21ID Arachis hypogaea HOM05D006473 ORTHO05D008108 8.4e-09 64.7 165 36.4
CSS0026100 Camellia sinensis var. sinensis HOM05D006473 ORTHO05D008108 8.4e-09 64.7 38 81.6
CSS0046570 Camellia sinensis var. sinensis HOM05D006473 ORTHO05D008108 8.4e-09 64.7 38 81.6
COL.COLO4_19989 Corchorus olitorius HOM05D006473 ORTHO05D008108 8.4e-09 64.7 165 37.0
Haze_13545 Corylus avellana HOM05D006473 ORTHO05D008108 8.4e-09 64.7 43 69.8
FAN09G0937 Fragaria x ananassa HOM05D006473 ORTHO05D008108 8.4e-09 64.7 76 52.6
FAN14G2613 Fragaria x ananassa HOM05D006473 ORTHO05D008108 8.4e-09 64.7 76 52.6
MD09G1143500 Malus domestica HOM05D006473 ORTHO05D008108 8.4e-09 64.7 156 37.2
MD17G1129800 Malus domestica HOM05D006473 ORTHO05D008108 8.4e-09 64.7 43 74.4
Cfa023365 Carpinus fangiana HOM05D006473 ORTHO05D008108 1.1e-08 64.3 43 69.8
CiPaw.03G109100 Carya illinoinensis HOM05D006473 ORTHO05D008108 1.1e-08 64.3 158 36.7
COL.COLO4_18222 Corchorus olitorius HOM05D006473 ORTHO05D008108 1.1e-08 64.3 48 64.6
Haze_13544 Corylus avellana HOM05D006473 ORTHO05D008108 1.1e-08 64.3 43 69.8
Manes.08G068100 Manihot esculenta HOM05D006473 ORTHO05D008108 1.4e-08 63.9 156 30.8
Solyc07g043070.3 Solanum lycopersicum HOM05D006473 ORTHO05D008108 1.4e-08 63.9 150 32.0
MELO3C026363.2 Cucumis melo HOM05D006473 ORTHO05D008108 1.9e-08 63.5 158 38.0
Actinidia32074 Actinidia chinensis HOM05D006473 ORTHO05D008108 2.4e-08 63.2 46 69.6
Ciclev10012907m.g Citrus clementina HOM05D006473 ORTHO05D008108 2.4e-08 63.2 40 77.5
Lalb_Chr17g0337141 Lupinus albus HOM05D006473 ORTHO05D008108 2.4e-08 63.2 48 66.7
Psat5g106240 Pisum sativum HOM05D006473 ORTHO05D008108 2.4e-08 63.2 40 80.0
TPR.G17559 Trifolium pratense HOM05D006473 ORTHO05D008108 2.4e-08 63.2 172 35.5
Actinidia12507 Actinidia chinensis HOM05D006473 ORTHO05D008108 3.2e-08 62.8 159 31.4
CAN.G529.20 Capsicum annuum HOM05D006473 ORTHO05D008108 3.2e-08 62.8 140 37.9
Peaxi162Scf00322g00416 Petunia axillaris HOM05D006473 ORTHO05D008108 3.2e-08 62.8 159 32.7
Sed0014549 Sechium edule HOM05D006473 ORTHO05D008108 3.2e-08 62.8 172 35.5
Sopen07g022630 Solanum pennellii HOM05D006473 ORTHO05D008108 3.2e-08 62.8 150 32.0
vmacro08765 Vaccinium macrocarpon HOM05D006473 ORTHO05D008108 3.2e-08 62.8 160 31.9
Carub.0007s2685 Capsella rubella HOM05D006473 ORTHO05D008108 4.2e-08 62.4 140 37.1
FvH4_6g39300 Fragaria vesca HOM05D006473 ORTHO05D008108 4.2e-08 62.4 165 35.2
BcaB04g18284 Brassica carinata HOM05D006473 ORTHO05D008108 5.4e-08 62.0 44 68.2
Nitab4.5_0000170g0320 Nicotiana tabacum HOM05D006473 ORTHO05D008108 5.4e-08 62.0 43 67.4
PGSC0003DMG400013558 Solanum tuberosum HOM05D006473 ORTHO05D008108 5.4e-08 62.0 145 35.9
Thecc.01G174700 Theobroma cacao HOM05D006473 ORTHO05D008108 5.4e-08 62.0 155 34.2
Phvul.007G120134 Phaseolus vulgaris HOM05D006473 ORTHO05D008108 7.1e-08 61.6 172 32.0
Rhsim12G0015400 Rhododendron simsii HOM05D006473 ORTHO05D008108 7.1e-08 61.6 132 32.6
FAN05G1961 Fragaria x ananassa HOM05D006473 ORTHO05D008108 9.3e-08 61.2 171 34.5
Medtr3g082070 Medicago truncatula HOM05D006473 ORTHO05D008108 9.3e-08 61.2 163 36.2
Sc07g0001930 Simmondsia chinensis HOM05D006473 ORTHO05D008108 9.3e-08 61.2 144 30.6
unitig_62.g23243 Utricularia gibba HOM05D006473 ORTHO05D008108 9.3e-08 61.2 119 37.8
Cc00_g04870 Coffea canephora HOM05D006473 ORTHO05D008108 1.2e-07 60.8 144 33.3
RcHm_v2.0_Chr2g0153221 Rosa chinensis HOM05D006473 ORTHO05D008108 1.2e-07 60.8 164 34.8
A08p11670 Brassica napus HOM05D006473 ORTHO05D008108 1.6e-07 60.5 138 34.8
BraA08t33161Z Brassica rapa HOM05D006473 ORTHO05D008108 1.6e-07 60.5 138 34.8
Peaxi162Scf00393g01011 Petunia axillaris HOM05D006473 ORTHO05D008108 1.6e-07 60.5 151 33.1
QL07p025679 Quercus lobata HOM05D006473 ORTHO05D008108 1.6e-07 60.5 83 47.0
QL07p026979 Quercus lobata HOM05D006473 ORTHO05D008108 1.6e-07 60.5 83 47.0
Eucgr.A00949 Eucalyptus grandis HOM05D006473 ORTHO05D008108 2.1e-07 60.1 145 33.1
Gohir.A11G155300 Gossypium hirsutum HOM05D006473 ORTHO05D008108 2.1e-07 60.1 162 32.7
HanXRQChr02g0035171 Helianthus annuus HOM05D006473 ORTHO05D008108 2.1e-07 60.1 41 70.7
Nitab4.5_0011512g0010 Nicotiana tabacum HOM05D006473 ORTHO05D008108 2.1e-07 60.1 43 65.1
AT4G15140 Arabidopsis thaliana HOM05D006473 ORTHO05D008108 2.7e-07 59.7 140 38.6
Thhalv10027487m.g Eutrema salsugineum HOM05D006473 ORTHO05D008108 2.7e-07 59.7 35 77.1
AL7G40560 Arabidopsis lyrata HOM05D006473 ORTHO05D008108 3.5e-07 59.3 43 67.4
CARHR221880 Cardamine hirsuta HOM05D006473 ORTHO05D008108 3.5e-07 59.3 141 32.6
Glyma.13G004200 Glycine max HOM05D006473 ORTHO05D008108 3.5e-07 59.3 173 32.4
Sp7g13370 Schrenkiella parvula HOM05D006473 ORTHO05D008108 3.5e-07 59.3 43 67.4
BcaC07g37876 Brassica carinata HOM05D006473 ORTHO05D008108 4.6e-07 58.9 138 34.1
BolC8t48269H Brassica oleracea HOM05D006473 ORTHO05D008108 4.6e-07 58.9 138 34.1
QL09p045725 Quercus lobata HOM05D006473 ORTHO05D008108 6.0e-07 58.5 72 50.0
Lsat_1_v5_gn_1_29560 Lactuca sativa HOM05D006473 ORTHO05D008108 7.8e-07 58.2 41 68.3
Lj6g0005292 Lotus japonicus HOM05D006473 ORTHO05D008108 7.8e-07 58.2 172 32.6
Aa31LG9G2250 Aethionema arabicum HOM05D006473 ORTHO05D008108 1.3e-06 57.4 47 57.4
ECA247G3587 Erigeron canadensis HOM05D006473 ORTHO05D008108 1.7e-06 57.0 160 32.5
BcaC08g44251 Brassica carinata HOM05D006473 ORTHO05D008108 5.1e-06 55.5 43 62.8
C06p16570 Brassica napus HOM05D006473 ORTHO05D008108 5.1e-06 55.5 43 62.8
BolC6t36859H Brassica oleracea HOM05D006473 ORTHO05D008108 5.1e-06 55.5 43 62.8
Hund23023 Selenicereus undatus HOM05D006473 ORTHO05D008108 5.1e-06 55.5 147 27.9
QL07p027003 Quercus lobata HOM05D006473 ORTHO05D008108 6.6e-06 55.1 83 44.6
QL07p026949 Quercus lobata HOM05D006473 ORTHO05D008108 8.7e-06 54.7 83 44.6
THA.LOC104808506 Tarenaya hassleriana HOM05D006473 ORTHO05D008108 8.7e-06 54.7 150 31.3


User provided reference genes

Program Settings