Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb077400 Zea mays HOM05D006857 ORTHO05D008679 1.1e-286 989.2 489 100.0
Os04g0510700 Oryza sativa ssp. japonica HOM05D006857 ORTHO05D008679 3.4e-190 668.7 434 74.7
ATR0787G032 Amborella trichopoda HOM05D006857 ORTHO05D008679 1.1e-124 451.1 417 54.9
CSS0034732 Camellia sinensis var. sinensis HOM05D006857 ORTHO05D008679 1.1e-124 451.1 404 55.2
Rhsim04G0172300 Rhododendron simsii HOM05D006857 ORTHO05D008679 2.0e-121 440.3 408 54.4
QL06p021004 Quercus lobata HOM05D006857 ORTHO05D008679 7.5e-121 438.3 415 54.7
vmacro08554 Vaccinium macrocarpon HOM05D006857 ORTHO05D008679 6.4e-120 435.3 402 54.7
Cfa014781 Carpinus fangiana HOM05D006857 ORTHO05D008679 1.4e-119 434.1 410 52.9
RcHm_v2.0_Chr4g0395361 Rosa chinensis HOM05D006857 ORTHO05D008679 9.2e-119 431.4 405 52.8
Actinidia35816 Actinidia chinensis HOM05D006857 ORTHO05D008679 2.0e-118 430.3 404 55.4
FvH4_4g04570 Fragaria vesca HOM05D006857 ORTHO05D008679 2.7e-118 429.9 429 50.8
TAR362G0064 Trochodendron aralioides HOM05D006857 ORTHO05D008679 6.0e-118 428.7 410 53.7
CsaV3_3G011690 Cucumis sativus L. HOM05D006857 ORTHO05D008679 1.0e-117 427.9 413 53.5
Nn1g02958 Nelumbo nucifera HOM05D006857 ORTHO05D008679 1.0e-117 427.9 425 52.5
Psat7g076560 Pisum sativum HOM05D006857 ORTHO05D008679 1.7e-117 427.2 408 53.2
Medtr8g085480 Medicago truncatula HOM05D006857 ORTHO05D008679 3.9e-117 426.0 411 53.3
Cpa.g.sc44.1 Carica papaya HOM05D006857 ORTHO05D008679 5.0e-117 425.6 405 53.3
Glyma.10G132600 Glycine max HOM05D006857 ORTHO05D008679 6.6e-117 425.2 434 50.0
FAN17G2805 Fragaria x ananassa HOM05D006857 ORTHO05D008679 1.1e-116 424.5 402 52.2
MD16G1226200 Malus domestica HOM05D006857 ORTHO05D008679 3.3e-116 422.9 403 52.9
TWI09G0838 Tripterygium wilfordii HOM05D006857 ORTHO05D008679 4.3e-116 422.5 412 53.2
CiPaw.02G107000 Carya illinoinensis HOM05D006857 ORTHO05D008679 7.3e-116 421.8 433 51.0
Sc19g0005530 Simmondsia chinensis HOM05D006857 ORTHO05D008679 4.7e-115 419.1 435 50.3
Duzib151G0230 Durio zibethinus HOM05D006857 ORTHO05D008679 1.1e-114 417.9 411 51.3
Ciclev10005032m.g Citrus clementina HOM05D006857 ORTHO05D008679 3.1e-114 416.4 405 54.1
PSO017G4333 Papaver somniferum HOM05D006857 ORTHO05D008679 3.1e-114 416.4 409 51.8
Prupe.1G048100 Prunus persica HOM05D006857 ORTHO05D008679 3.1e-114 416.4 432 50.7
Thecc.04G264000 Theobroma cacao HOM05D006857 ORTHO05D008679 3.1e-114 416.4 416 49.8
Gorai.011G177900 Gossypium raimondii HOM05D006857 ORTHO05D008679 6.8e-114 415.2 441 49.9
CANSAT78G0655 Cannabis sativa HOM05D006857 ORTHO05D008679 8.9e-114 414.8 410 50.0
Ca_17963_v3 Cicer arietinum L. HOM05D006857 ORTHO05D008679 2.0e-113 413.7 412 51.9
PSO063G2784 Papaver somniferum HOM05D006857 ORTHO05D008679 2.0e-113 413.7 420 51.2
Atru.chr4.1915 Acer truncatum HOM05D006857 ORTHO05D008679 2.6e-113 413.3 414 53.4
Gohir.D10G158400 Gossypium hirsutum HOM05D006857 ORTHO05D008679 2.6e-113 413.3 441 49.7
VMungo0720G0849 Vigna mungo HOM05D006857 ORTHO05D008679 2.6e-113 413.3 403 51.6
Aqoxy2G03746 Aquilegia oxysepala HOM05D006857 ORTHO05D008679 4.4e-113 412.5 408 51.0
MD07G1289900 Malus domestica HOM05D006857 ORTHO05D008679 5.8e-113 412.1 404 52.2
Manes.03G158900 Manihot esculenta HOM05D006857 ORTHO05D008679 5.8e-113 412.1 413 51.3
Cc03_g06310 Coffea canephora HOM05D006857 ORTHO05D008679 9.8e-113 411.4 404 52.0
MELO3C006377.2 Cucumis melo HOM05D006857 ORTHO05D008679 1.3e-112 411.0 452 50.2
GSVIVG01027915001 Vitis vinifera HOM05D006857 ORTHO05D008679 2.9e-112 409.8 426 50.5
ClCG05G004000 Citrullus lanatus HOM05D006857 ORTHO05D008679 3.7e-112 409.5 400 53.2
Lsat_1_v5_gn_2_41360 Lactuca sativa HOM05D006857 ORTHO05D008679 6.4e-112 408.7 401 52.9
Lalb_Chr03g0036951 Lupinus albus HOM05D006857 ORTHO05D008679 6.4e-112 408.7 415 51.8
Aqoxy7G02302 Aquilegia oxysepala HOM05D006857 ORTHO05D008679 1.1e-111 407.9 408 50.5
EL10Ac3g06657 Beta vulgaris HOM05D006857 ORTHO05D008679 1.1e-111 407.9 447 49.7
Nitab4.5_0000194g0200 Nicotiana tabacum HOM05D006857 ORTHO05D008679 1.1e-111 407.9 408 50.0
PGR031G1141 Punica granatum HOM05D006857 ORTHO05D008679 1.1e-111 407.9 434 51.8
PGR031G1585 Punica granatum HOM05D006857 ORTHO05D008679 1.1e-111 407.9 434 51.8
arahy.Tifrunner.gnm1.ann1.I81STG Arachis hypogaea HOM05D006857 ORTHO05D008679 5.4e-111 405.6 411 49.6
CAN.G524.29 Capsicum annuum HOM05D006857 ORTHO05D008679 5.4e-111 405.6 432 47.7
AUR62015271 Chenopodium quinoa HOM05D006857 ORTHO05D008679 5.4e-111 405.6 435 49.0
Nitab4.5_0013063g0010 Nicotiana tabacum HOM05D006857 ORTHO05D008679 9.2e-111 404.8 411 49.9
PGSC0003DMG400017145 Solanum tuberosum HOM05D006857 ORTHO05D008679 1.2e-110 404.4 408 49.8
Aqoxy7G02465 Aquilegia oxysepala HOM05D006857 ORTHO05D008679 2.1e-110 403.7 408 50.2
arahy.Tifrunner.gnm1.ann1.SJBM1Y Arachis hypogaea HOM05D006857 ORTHO05D008679 2.1e-110 403.7 411 49.4
Lj6g0000537 Lotus japonicus HOM05D006857 ORTHO05D008679 2.1e-110 403.7 408 50.7
Hund20529 Selenicereus undatus HOM05D006857 ORTHO05D008679 2.1e-110 403.7 433 50.8
Sed0022275 Sechium edule HOM05D006857 ORTHO05D008679 4.6e-110 402.5 399 53.6
Solyc09g090690.4 Solanum lycopersicum HOM05D006857 ORTHO05D008679 4.6e-110 402.5 410 49.5
Sopen09g033630 Solanum pennellii HOM05D006857 ORTHO05D008679 4.6e-110 402.5 410 49.5
HanXRQChr06g0182801 Helianthus annuus HOM05D006857 ORTHO05D008679 1.3e-109 401.0 401 53.9
Haze_11458 Corylus avellana HOM05D006857 ORTHO05D008679 1.7e-109 400.6 367 53.7
SGA_v2.0_scaffold67G22686 Striga asiatica HOM05D006857 ORTHO05D008679 5.1e-109 399.1 429 48.7
Sabra08G0131200 Salix brachista HOM05D006857 ORTHO05D008679 1.5e-108 397.5 420 50.2
AUR62018068 Chenopodium quinoa HOM05D006857 ORTHO05D008679 4.7e-107 392.5 415 49.9
Potri.008G171900 Populus trichocarpa HOM05D006857 ORTHO05D008679 1.8e-106 390.6 420 49.3
Migut.G00555 Erythranthe guttata HOM05D006857 ORTHO05D008679 3.1e-106 389.8 429 47.8
Peaxi162Scf00153g01846 Petunia axillaris HOM05D006857 ORTHO05D008679 3.1e-106 389.8 411 49.1
COL.COLO4_15963 Corchorus olitorius HOM05D006857 ORTHO05D008679 5.2e-106 389.0 369 52.0
Ah.04g153670 Amaranthus hybridus HOM05D006857 ORTHO05D008679 1.4e-103 380.9 429 48.0
Eucgr.H00127 Eucalyptus grandis HOM05D006857 ORTHO05D008679 9.2e-103 378.3 389 49.9
Lj6C621T18 Lonicera japonica HOM05D006857 ORTHO05D008679 1.6e-102 377.5 500 43.0
Sp7g10880 Schrenkiella parvula HOM05D006857 ORTHO05D008679 1.0e-101 374.8 412 46.8
THA.LOC104804575 Tarenaya hassleriana HOM05D006857 ORTHO05D008679 3.0e-101 373.2 402 48.8
Aa31LG9G4440 Aethionema arabicum HOM05D006857 ORTHO05D008679 3.9e-101 372.9 441 46.7
C06p17330 Brassica napus HOM05D006857 ORTHO05D008679 6.2e-99 365.5 404 47.8
BolC6t36929H Brassica oleracea HOM05D006857 ORTHO05D008679 6.2e-99 365.5 404 47.8
BraA05t20557Z Brassica rapa HOM05D006857 ORTHO05D008679 6.2e-99 365.5 431 46.2
A05p16520 Brassica napus HOM05D006857 ORTHO05D008679 8.1e-99 365.2 403 47.9
Phvul.007G231500 Phaseolus vulgaris HOM05D006857 ORTHO05D008679 2.4e-98 363.6 353 51.0
AT4G13330 Arabidopsis thaliana HOM05D006857 ORTHO05D008679 4.0e-98 362.8 405 46.9
CARHR218870 Cardamine hirsuta HOM05D006857 ORTHO05D008679 8.9e-98 361.7 409 48.2
ECA234G1558 Erigeron canadensis HOM05D006857 ORTHO05D005985 1.5e-97 360.9 369 50.9
Thhalv10026810m.g Eutrema salsugineum HOM05D006857 ORTHO05D008679 1.5e-97 360.9 404 47.0
AL9U10380 Arabidopsis lyrata HOM05D006857 ORTHO05D008679 7.6e-97 358.6 405 46.9
Carub.0007s2931 Capsella rubella HOM05D006857 ORTHO05D008679 2.2e-96 357.1 405 47.7
CDE02G1483 Ceratophyllum demersum HOM05D006857 ORTHO05D008679 3.8e-96 356.3 436 45.4
SalBow3G1529 Salvia bowleyana HOM05D006857 ORTHO05D008679 5.4e-95 352.4 402 45.8
Hma1.2p1_0112F.1_g054740 Hydrangea macrophylla HOM05D006857 ORTHO05D008679 2.1e-94 350.5 358 50.3
MSTRG.4172 Avicennia marina HOM05D006857 ORTHO05D008679 8.7e-93 345.1 370 48.6
DCAR_002298 Daucus carota HOM05D004684 ORTHO05D006904 4.3e-92 342.8 349 49.0
Oeu002936.2 Olea europaea HOM05D006857 ORTHO05D008679 3.0e-85 320.1 467 40.5
TPR.G11804 Trifolium pratense HOM05D006857 ORTHO05D008679 2.7e-78 297.0 302 50.7
Pp3c15_24290 Physcomitrium patens HOM05D006857 ORTHO05D008679 1.9e-76 290.8 451 38.1
Dinv27112 Davidia involucrata HOM05D006857 ORTHO05D008679 5.3e-74 282.7 313 50.2
MBI10_g35430_MAGBIO Magnolia biondii HOM05D006857 ORTHO05D008679 1.1e-66 258.5 292 47.9
Mapoly0127s0023 Marchantia polymorpha HOM05D006857 ORTHO05D008679 1.4e-66 258.1 440 37.7
SHI00774 Sapria himalayana HOM05D006857 ORTHO05D008679 5.5e-55 219.5 271 45.0
MBI10_g35433_MAGBIO Magnolia biondii HOM05D006857 ORTHO05D008679 3.9e-53 213.4 236 49.2
BcaC08g44309 Brassica carinata HOM05D006857 ORTHO05D008679 2.4e-50 204.1 185 55.7
unitig_748.g8297 Utricularia gibba HOM05D006857 ORTHO05D008679 3.3e-44 183.7 185 49.2
unitig_748.g8298 Utricularia gibba HOM05D006857 ORTHO05D008679 1.3e-40 171.8 209 46.4
AagrBONN_evm.TU.Sc2ySwM_117.1189 Anthoceros agrestis HOM05D006857 ORTHO05D008679 3.2e-39 167.2 293 38.2
BcaC08g44310 Brassica carinata HOM05D006857 ORTHO05D008679 1.7e-35 154.8 209 40.2
CDE08G1596 Ceratophyllum demersum HOM05D006857 ORTHO05D008679 1.7e-35 154.8 182 44.0
MBI10_g35434_MAGBIO Magnolia biondii HOM05D006857 ORTHO05D008679 6.5e-32 142.9 162 47.5
FvH4_5g26950 Fragaria vesca HOM05D006857 ORTHO05D008679 9.4e-31 139.0 113 58.4
FAN13G3085 Fragaria x ananassa HOM05D006857 ORTHO05D008679 4.0e-29 133.7 114 57.9
SEGI_21065 Sequoiadendron giganteum HOM05D006857 ORTHO05D008679 4.0e-13 80.5 98 43.9
TPR.G25294 Trifolium pratense HOM05D006857 ORTHO05D008679 6.8e-13 79.7 106 40.6
SHI00775 Sapria himalayana HOM05D000105 ORTHO05D000023 1.8e-10 71.6 79 40.5
MCO09G143 Micromonas commoda HOM05D006857 ORTHO05D008679 9.2e-10 69.3 183 29.5
MCO07G483 Micromonas commoda HOM05D006857 ORTHO05D008679 7.8e-09 66.2 219 29.7
HanXRQChr11g0332551 Helianthus annuus HOM05D006857 ORTHO05D008679 3.9e-08 63.9 52 59.6


User provided reference genes

Program Settings