Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb077360 Zea mays HOM05D001580 ORTHO05D001517 5.7e-40 167.2 86 100.0
Zm00001eb179530 Zea mays HOM05D001580 ORTHO05D001517 8.8e-17 90.1 42 100.0
Zm00001eb041750 Zea mays HOM05D001580 ORTHO05D001517 1.1e-14 83.2 42 90.5
Zm00001eb014580 Zea mays HOM05D001580 ORTHO05D001517 1.0e-12 76.6 35 100.0
Zm00001eb414820 Zea mays HOM05D001580 ORTHO05D001517 2.9e-12 75.1 35 97.1
Os08g0431100 Oryza sativa ssp. japonica HOM05D001580 ORTHO05D001517 2.5e-11 72.0 42 78.6
CDE05G2558 Ceratophyllum demersum HOM05D001580 ORTHO05D001517 3.0e-09 65.1 44 59.1
CDE05G2360 Ceratophyllum demersum HOM05D001580 ORTHO05D001517 4.0e-09 64.7 42 64.3
Gohir.A13G054100 Gossypium hirsutum HOM05D001580 ORTHO05D001517 1.5e-08 62.8 51 54.9
Nn3g17805 Nelumbo nucifera HOM05D001580 ORTHO05D001517 1.5e-08 62.8 42 64.3
Potri.008G119400 Populus trichocarpa HOM05D001580 ORTHO05D001517 1.5e-08 62.8 59 50.8
Prupe.1G309000 Prunus persica HOM05D001580 ORTHO05D001517 1.5e-08 62.8 42 64.3
MBI12_g23292_MAGBIO Magnolia biondii HOM05D001580 ORTHO05D001517 2.0e-08 62.4 42 61.9
VMungo1215G2901 Vigna mungo HOM05D001580 ORTHO05D001517 2.0e-08 62.4 42 61.9
Glyma.08G263800 Glycine max HOM05D001580 ORTHO05D001517 3.4e-08 61.6 42 61.9
Hma1.2p1_3293F.1_g334950 Hydrangea macrophylla HOM05D001580 ORTHO05D001517 3.4e-08 61.6 59 49.2
Actinidia13666 Actinidia chinensis HOM05D001580 ORTHO05D001517 4.4e-08 61.2 59 49.2
Aqoxy3G03949 Aquilegia oxysepala HOM05D001580 ORTHO05D001517 4.4e-08 61.2 42 59.5
ClCG08G005230 Citrullus lanatus HOM05D001580 ORTHO05D001517 4.4e-08 61.2 42 59.5
COL.COLO4_07905 Corchorus olitorius HOM05D001580 ORTHO05D001517 4.4e-08 61.2 42 57.1
CsaV3_6G003420 Cucumis sativus L. HOM05D001580 ORTHO05D001517 4.4e-08 61.2 42 59.5
Dinv21105 Davidia involucrata HOM05D001580 ORTHO05D001517 4.4e-08 61.2 59 49.2
FvH4_4g27610 Fragaria vesca HOM05D001580 ORTHO05D001517 4.4e-08 61.2 42 61.9
FAN12G1012 Fragaria x ananassa HOM05D001580 ORTHO05D001517 4.4e-08 61.2 42 61.9
FAN12G2491 Fragaria x ananassa HOM05D001580 ORTHO05D001517 4.4e-08 61.2 42 61.9
FAN22G2176 Fragaria x ananassa HOM05D001580 ORTHO05D001517 4.4e-08 61.2 42 61.9
Glyma.01G082400 Glycine max HOM05D001580 ORTHO05D001517 4.4e-08 61.2 42 59.5
Gohir.D13G071600 Gossypium hirsutum HOM05D001580 ORTHO05D001517 4.4e-08 61.2 51 52.9
Gorai.013G082000 Gossypium raimondii HOM05D001580 ORTHO05D001517 4.4e-08 61.2 51 52.9
MD16G1044300 Malus domestica HOM05D001580 ORTHO05D001517 4.4e-08 61.2 42 61.9
RcHm_v2.0_Chr4g0435461 Rosa chinensis HOM05D001580 ORTHO05D001517 4.4e-08 61.2 42 61.9
Sabra10G0096200 Salix brachista HOM05D001580 ORTHO05D001517 4.4e-08 61.2 62 50.0
Sed0013346 Sechium edule HOM05D001580 ORTHO05D001517 4.4e-08 61.2 42 61.9
TAR371G0795 Trochodendron aralioides HOM05D001580 ORTHO05D001517 4.4e-08 61.2 64 48.4
Gohir.D12G171500 Gossypium hirsutum HOM05D001580 ORTHO05D001517 5.7e-08 60.8 42 59.5
Gorai.008G184000 Gossypium raimondii HOM05D001580 ORTHO05D001517 5.7e-08 60.8 42 59.5
Ciclev10030866m.g Citrus clementina HOM05D001580 ORTHO05D001517 7.5e-08 60.5 42 59.5
FAN07G0550 Fragaria x ananassa HOM05D001580 ORTHO05D001517 7.5e-08 60.5 42 61.9
PSO063G2552 Papaver somniferum HOM05D001580 ORTHO05D001517 7.5e-08 60.5 42 59.5
Potri.010G126700 Populus trichocarpa HOM05D001580 ORTHO05D001517 7.5e-08 60.5 59 50.8
Duzib251G0849 Durio zibethinus HOM05D001580 ORTHO05D001517 9.8e-08 60.1 42 57.1
Duzib268G1243 Durio zibethinus HOM05D001580 ORTHO05D001517 9.8e-08 60.1 42 59.5
Lj6A761T51 Lonicera japonica HOM05D001580 ORTHO05D001517 9.8e-08 60.1 59 49.2
Oeu057622.1 Olea europaea HOM05D001580 ORTHO05D001517 9.8e-08 60.1 59 49.2
QL01p043854 Quercus lobata HOM05D001580 ORTHO05D001517 9.8e-08 60.1 59 49.2
Rhsim12G0082700 Rhododendron simsii HOM05D001580 ORTHO05D001517 9.8e-08 60.1 59 47.5
Thecc.02G357100 Theobroma cacao HOM05D001580 ORTHO05D001517 9.8e-08 60.1 42 57.1
HPP92_023479 Vanilla planifolia HOM05D001580 ORTHO05D001517 9.8e-08 60.1 42 61.9
MELO3C011556.2 Cucumis melo HOM05D001580 ORTHO05D001517 1.3e-07 59.7 42 59.5
Manes.14G100700 Manihot esculenta HOM05D001580 ORTHO05D001517 1.3e-07 59.7 42 57.1
MD13G1043500 Malus domestica HOM05D001580 ORTHO05D001517 1.7e-07 59.3 42 59.5
PGR102G0992 Punica granatum HOM05D001580 ORTHO05D001517 1.7e-07 59.3 42 54.8
Sabra08G0090600 Salix brachista HOM05D001580 ORTHO05D001517 1.7e-07 59.3 59 49.2
Ca_18124_v3 Cicer arietinum L. HOM05D001580 ORTHO05D001517 2.2e-07 58.9 42 59.5
Eucgr.B03027 Eucalyptus grandis HOM05D001580 ORTHO05D001517 2.2e-07 58.9 51 52.9
vmacro01374 Vaccinium macrocarpon HOM05D001580 ORTHO05D001517 2.2e-07 58.9 59 47.5
Peaxi162Scf00004g01817 Petunia axillaris HOM05D001580 ORTHO05D001517 2.8e-07 58.5 42 52.4
Actinidia03234 Actinidia chinensis HOM05D001580 ORTHO05D001517 3.7e-07 58.2 59 47.5
Actinidia16642 Actinidia chinensis HOM05D001580 ORTHO05D001517 3.7e-07 58.2 59 47.5
Lsat_1_v5_gn_4_18460 Lactuca sativa HOM05D001580 ORTHO05D001517 3.7e-07 58.2 42 57.1
Oeu003403.3 Olea europaea HOM05D001580 ORTHO05D001517 3.7e-07 58.2 42 54.8
TWI75G1749 Tripterygium wilfordii HOM05D001580 ORTHO05D001517 3.7e-07 58.2 42 57.1
arahy.Tifrunner.gnm1.ann1.55Y2CK Arachis hypogaea HOM05D001580 ORTHO05D001517 6.3e-07 57.4 42 54.8
arahy.Tifrunner.gnm1.ann1.NE4VJA Arachis hypogaea HOM05D001580 ORTHO05D001517 6.3e-07 57.4 42 54.8
BcaC08g46309 Brassica carinata HOM05D001580 ORTHO05D001517 6.3e-07 57.4 59 49.2
A07p35010 Brassica napus HOM05D001580 ORTHO05D001517 6.3e-07 57.4 59 49.2
C06p41260 Brassica napus HOM05D001580 ORTHO05D001517 6.3e-07 57.4 59 49.2
BolC6t39299H Brassica oleracea HOM05D001580 ORTHO05D001517 6.3e-07 57.4 59 49.2
CAN.G45.8 Capsicum annuum HOM05D001580 ORTHO05D001517 6.3e-07 57.4 42 52.4
Gohir.A12G167900 Gossypium hirsutum HOM05D001580 ORTHO05D001517 6.3e-07 57.4 42 57.1
Sc11g0003260 Simmondsia chinensis HOM05D001580 ORTHO05D001517 6.3e-07 57.4 43 53.5
TPR.G38304 Trifolium pratense HOM05D001580 ORTHO05D001517 6.3e-07 57.4 42 54.8
Cc11_g10280 Coffea canephora HOM05D001580 ORTHO05D001517 8.3e-07 57.0 59 45.8
HanXRQChr17g0567621 Helianthus annuus HOM05D001580 ORTHO05D001517 8.3e-07 57.0 42 54.8
Lalb_Chr04g0254781 Lupinus albus HOM05D001580 ORTHO05D001517 8.3e-07 57.0 42 57.1
CSS0015801 Camellia sinensis var. sinensis HOM05D001580 ORTHO05D001517 1.1e-06 56.6 42 54.8
Migut.L01075 Erythranthe guttata HOM05D001580 ORTHO05D001517 1.1e-06 56.6 59 45.8
Migut.L01392 Erythranthe guttata HOM05D001580 ORTHO05D001517 1.1e-06 56.6 59 45.8
Lalb_Chr17g0342061 Lupinus albus HOM05D001580 ORTHO05D001517 1.1e-06 56.6 42 54.8
BcaB03g15430 Brassica carinata HOM05D001580 ORTHO05D001517 1.4e-06 56.2 42 57.1
BcaC08g45956 Brassica carinata HOM05D001580 ORTHO05D001517 1.4e-06 56.2 42 57.1
A07p31930 Brassica napus HOM05D001580 ORTHO05D001517 1.4e-06 56.2 42 57.1
C06p37500 Brassica napus HOM05D001580 ORTHO05D001517 1.4e-06 56.2 42 57.1
BolC6t38852H Brassica oleracea HOM05D001580 ORTHO05D001517 1.4e-06 56.2 42 57.1
BraA07t30821Z Brassica rapa HOM05D001580 ORTHO05D001517 1.4e-06 56.2 42 57.1
CANSAT64G1699 Cannabis sativa HOM05D001580 ORTHO05D001517 1.4e-06 56.2 42 50.0
Sp5g23680 Schrenkiella parvula HOM05D001580 ORTHO05D001517 1.4e-06 56.2 42 57.1
THA.LOC104821945 Tarenaya hassleriana HOM05D001580 ORTHO05D001517 1.4e-06 56.2 42 54.8
Aa31sc179G70 Aethionema arabicum HOM05D001580 ORTHO05D001517 1.8e-06 55.8 42 54.8
Ah.02g127030 Amaranthus hybridus HOM05D001580 ORTHO05D001517 1.8e-06 55.8 59 47.5
AL2G27480 Arabidopsis lyrata HOM05D001580 ORTHO05D001517 1.8e-06 55.8 59 45.8
Thhalv10018227m.g Eutrema salsugineum HOM05D001580 ORTHO05D001517 1.8e-06 55.8 42 54.8
AT1G68580 Arabidopsis thaliana HOM05D001580 ORTHO05D001517 2.4e-06 55.5 59 44.1
ECA234G2014 Erigeron canadensis HOM05D001580 ORTHO05D001517 2.4e-06 55.5 42 50.0
Hund05755 Selenicereus undatus HOM05D001580 ORTHO05D001517 2.4e-06 55.5 42 52.4
unitig_22.g6873 Utricularia gibba HOM05D001580 ORTHO05D009101 2.4e-06 55.5 42 52.4
EL10Ac6g14436 Beta vulgaris HOM05D001580 ORTHO05D001517 3.1e-06 55.1 59 47.5
Medtr5g055210 Medicago truncatula HOM05D001580 ORTHO05D001517 3.1e-06 55.1 42 52.4
SalBow8G2131 Salvia bowleyana HOM05D001580 ORTHO05D001517 3.1e-06 55.1 41 51.2
BcaB03g15837 Brassica carinata HOM05D001580 ORTHO05D001517 4.1e-06 54.7 59 45.8
Carub.0002s1511 Capsella rubella HOM05D001580 ORTHO05D001517 4.1e-06 54.7 59 44.1
SGA_v2.0_scaffold124G33545 Striga asiatica HOM05D001580 ORTHO05D001517 4.1e-06 54.7 59 42.4
THA.LOC104804864 Tarenaya hassleriana HOM05D001580 ORTHO05D001517 4.1e-06 54.7 42 52.4
TWI79G1395 Tripterygium wilfordii HOM05D001580 ORTHO05D001517 4.1e-06 54.7 59 47.5
CARHR061370 Cardamine hirsuta HOM05D001580 ORTHO05D001517 5.4e-06 54.3 51 49.0
DCAR_030073 Daucus carota HOM05D001580 ORTHO05D001517 5.4e-06 54.3 84 36.9
Lj2g0010314 Lotus japonicus HOM05D001580 ORTHO05D001517 5.4e-06 54.3 42 52.4
AUR62002888 Chenopodium quinoa HOM05D001580 ORTHO05D001517 9.2e-06 53.5 42 52.4


User provided reference genes

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