Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb077060 Zea mays HOM05D005228 ORTHO05D006208 1.0e-84 316.6 153 100.0
Zm00001eb426760 Zea mays HOM05D005228 ORTHO05D006208 3.6e-37 158.7 95 83.2
Os04g0522800 Oryza sativa ssp. japonica HOM05D005228 ORTHO05D006208 2.7e-24 115.9 94 64.9
TAR374G1162 Trochodendron aralioides HOM05D005228 ORTHO05D006208 4.9e-18 95.1 85 55.3
MBI03_g05132_MAGBIO Magnolia biondii HOM05D005228 ORTHO05D006208 1.2e-16 90.5 84 56.0
MBI03_g22258_MAGBIO Magnolia biondii HOM05D005228 ORTHO05D006208 1.2e-16 90.5 84 56.0
Prupe.1G343900 Prunus persica HOM05D005228 ORTHO05D006208 2.7e-16 89.4 87 51.7
TAR622G0859 Trochodendron aralioides HOM05D005228 ORTHO05D006208 2.7e-16 89.4 84 52.4
TAR374G0035 Trochodendron aralioides HOM05D005228 ORTHO05D006208 4.6e-16 88.6 85 52.9
QL03p042997 Quercus lobata HOM05D005228 ORTHO05D006208 6.0e-16 88.2 82 54.9
MD13G1008800 Malus domestica HOM05D005228 ORTHO05D006208 1.7e-15 86.7 84 52.4
MD16G1006800 Malus domestica HOM05D005228 ORTHO05D006208 3.9e-15 85.5 84 52.4
Os02g0631100 Oryza sativa ssp. japonica HOM05D027772 ORTHO05D006208 8.6e-15 84.3 96 53.1
Rhsim09G0077600 Rhododendron simsii HOM05D005228 ORTHO05D006208 8.6e-15 84.3 84 51.2
Aqoxy3G04228 Aquilegia oxysepala HOM05D005228 ORTHO05D006208 1.5e-14 83.6 84 48.8
vmacro10768 Vaccinium macrocarpon HOM05D005228 ORTHO05D006208 1.9e-14 83.2 84 48.8
RcHm_v2.0_Chr4g0446251 Rosa chinensis HOM05D005228 ORTHO05D006208 9.5e-14 80.9 84 50.0
FvH4_4g36490 Fragaria vesca HOM05D005228 ORTHO05D006208 4.7e-13 78.6 84 47.6
FAN07G0272 Fragaria x ananassa HOM05D005228 ORTHO05D006208 4.7e-13 78.6 84 47.6
FAN17G0758 Fragaria x ananassa HOM05D005228 ORTHO05D006208 1.1e-12 77.4 84 46.4
TWI74G0351 Tripterygium wilfordii HOM05D005228 ORTHO05D006208 1.1e-12 77.4 84 47.6
TWI53G0022 Tripterygium wilfordii HOM05D005228 ORTHO05D006208 3.1e-12 75.9 84 47.6
ATR0618G414 Amborella trichopoda HOM05D005228 ORTHO05D006208 4.0e-12 75.5 89 43.8
HPP92_014780 Vanilla planifolia HOM05D005228 ORTHO05D006208 6.8e-12 74.7 93 45.2
DCAR_030341 Daucus carota HOM05D005228 ORTHO05D006208 9.9e-11 70.9 90 45.6
PSO063G4433 Papaver somniferum HOM05D005228 ORTHO05D006208 2.9e-10 69.3 84 40.5
DCAR_002620 Daucus carota HOM05D005228 ORTHO05D006208 1.4e-09 67.0 81 42.0
FAN12G2448 Fragaria x ananassa HOM05D005228 ORTHO05D006208 1.4e-09 67.0 103 38.8
FAN22G0888 Fragaria x ananassa HOM05D005228 ORTHO05D006208 1.9e-09 66.6 103 38.8
PSO782G4591 Papaver somniferum HOM05D005228 ORTHO05D006208 1.9e-09 66.6 82 39.0
PSO063G6809 Papaver somniferum HOM05D005228 ORTHO05D006208 2.4e-09 66.2 84 38.1
PSO198G0099 Papaver somniferum HOM05D005228 ORTHO05D006208 2.4e-09 66.2 84 38.1
ATR1088G002 Amborella trichopoda HOM05D005228 ORTHO05D006208 5.4e-09 65.1 88 39.8
CDE05G0607 Ceratophyllum demersum HOM05D005228 ORTHO05D006208 9.2e-09 64.3 84 39.3
MSTRG.6887 Avicennia marina HOM05D005228 ORTHO05D006208 1.2e-08 63.9 80 40.0
Nn3g18682 Nelumbo nucifera HOM05D005228 ORTHO05D006208 1.2e-08 63.9 54 55.6
Dinv02962 Davidia involucrata HOM05D005228 ORTHO05D006208 1.6e-08 63.5 57 52.6
Oeu013859.1 Olea europaea HOM05D005228 ORTHO05D006208 1.6e-08 63.5 81 37.0
TAR629G3517 Trochodendron aralioides HOM05D005228 ORTHO05D006208 4.6e-08 62.0 87 40.2
Zm00001eb351160 Zea mays HOM05D027772 ORTHO05D009363 4.6e-08 62.0 58 55.2
Zm00001eb301740 Zea mays HOM05D027772 ORTHO05D006208 7.8e-08 61.2 55 58.2
Gohir.A10G016700 Gossypium hirsutum HOM05D004209 ORTHO05D004970 1.3e-07 60.5 83 41.0
HanXRQChr05g0159241 Helianthus annuus HOM05D005228 ORTHO05D006208 1.7e-07 60.1 87 36.8
Gohir.D05G170500 Gossypium hirsutum HOM05D004209 ORTHO05D004970 2.3e-07 59.7 83 38.6
Lsat_1_v5_gn_5_4581 Lactuca sativa HOM05D005228 ORTHO05D006208 2.3e-07 59.7 87 36.8
TAR624G0645 Trochodendron aralioides HOM05D004209 ORTHO05D004970 2.3e-07 59.7 83 38.6
GSVIVG01014586001 Vitis vinifera HOM05D005228 ORTHO05D006208 2.3e-07 59.7 87 36.8
Lj8A165T109 Lonicera japonica HOM05D005228 ORTHO05D006208 3.0e-07 59.3 87 36.8
CAN.G1110.14 Capsicum annuum HOM05D005228 ORTHO05D006208 3.9e-07 58.9 81 37.0
CARHR252370 Cardamine hirsuta HOM05D004209 ORTHO05D004970 3.9e-07 58.9 81 39.5
Gohir.D10G016800 Gossypium hirsutum HOM05D004209 ORTHO05D004970 3.9e-07 58.9 83 39.8
Gorai.011G018700 Gossypium raimondii HOM05D004209 ORTHO05D004970 3.9e-07 58.9 83 39.8
Peaxi162Scf00257g00046 Petunia axillaris HOM05D005228 ORTHO05D006208 3.9e-07 58.9 81 37.0
Gohir.A06G121600 Gossypium hirsutum HOM05D004209 ORTHO05D004970 5.1e-07 58.5 83 38.6
Gorai.009G175700 Gossypium raimondii HOM05D004209 ORTHO05D004970 5.1e-07 58.5 83 38.6
PSO675G5450 Papaver somniferum HOM05D005228 ORTHO05D006208 5.1e-07 58.5 86 40.7
Zm00001eb106430 Zea mays HOM05D004209 ORTHO05D004970 5.1e-07 58.5 84 39.3
Zm00001eb323460 Zea mays HOM05D004209 ORTHO05D004970 5.1e-07 58.5 83 39.8
ATR1088G031 Amborella trichopoda HOM05D004209 ORTHO05D004970 6.6e-07 58.2 83 38.6
AL6G48780 Arabidopsis lyrata HOM05D004209 ORTHO05D004970 6.6e-07 58.2 83 39.8
Cfa020435 Carpinus fangiana HOM05D005228 ORTHO05D006208 6.6e-07 58.2 77 41.6
Gohir.D06G125800 Gossypium hirsutum HOM05D004209 ORTHO05D004970 6.6e-07 58.2 83 38.6
Gorai.010G146500 Gossypium raimondii HOM05D004209 ORTHO05D004970 6.6e-07 58.2 83 38.6
Nn1g03713 Nelumbo nucifera HOM05D005228 ORTHO05D006208 6.6e-07 58.2 87 36.8
RcHm_v2.0_Chr5g0004501 Rosa chinensis HOM05D004209 ORTHO05D004970 6.6e-07 58.2 83 37.3
Sabra04G0017800 Salix brachista HOM05D004209 ORTHO05D004970 6.6e-07 58.2 83 37.3
Sopen10g002480 Solanum pennellii HOM05D005228 ORTHO05D006208 6.6e-07 58.2 81 37.0
BcaNung03829 Brassica carinata HOM05D004209 ORTHO05D004970 8.6e-07 57.8 83 39.8
Cc05_g13170 Coffea canephora HOM05D005228 ORTHO05D006208 8.6e-07 57.8 83 41.0
ECA246G3532 Erigeron canadensis HOM05D005228 ORTHO05D000001 8.6e-07 57.8 87 35.6
SalBow1G6381 Salvia bowleyana HOM05D005228 ORTHO05D006208 8.6e-07 57.8 83 38.6
SalBow8G1056 Salvia bowleyana HOM05D005228 ORTHO05D006208 8.6e-07 57.8 83 38.6
Aa31LG6G3270 Aethionema arabicum HOM05D004209 ORTHO05D004970 1.1e-06 57.4 83 37.3
BcaB01g01890 Brassica carinata HOM05D004209 ORTHO05D004970 1.1e-06 57.4 81 38.3
BcaC04g21382 Brassica carinata HOM05D004209 ORTHO05D004970 1.1e-06 57.4 81 38.3
A09p25550 Brassica napus HOM05D004209 ORTHO05D004970 1.1e-06 57.4 81 38.3
C09p32460 Brassica napus HOM05D004209 ORTHO05D004970 1.1e-06 57.4 81 38.3
BolC9t56091H Brassica oleracea HOM05D004209 ORTHO05D004970 1.1e-06 57.4 81 38.3
BraA09t38130Z Brassica rapa HOM05D004209 ORTHO05D004970 1.1e-06 57.4 81 38.3
DCAR_024925 Daucus carota HOM05D004209 ORTHO05D004970 1.1e-06 57.4 83 38.6
Thhalv10028939m.g Eutrema salsugineum HOM05D004209 ORTHO05D004970 1.1e-06 57.4 81 38.3
PSO541G0032 Papaver somniferum HOM05D005228 ORTHO05D006208 1.1e-06 57.4 86 40.7
Sp6g03810 Schrenkiella parvula HOM05D004209 ORTHO05D004970 1.1e-06 57.4 81 38.3
Zm00001eb203550 Zea mays HOM05D027772 ORTHO05D006208 1.1e-06 57.4 55 54.5
AT4G05180 Arabidopsis thaliana HOM05D004209 ORTHO05D004970 1.5e-06 57.0 83 38.6
MD03G1212800 Malus domestica HOM05D005228 ORTHO05D006208 1.5e-06 57.0 89 40.4
PGSC0003DMG400014402 Solanum tuberosum HOM05D005228 ORTHO05D006208 1.5e-06 57.0 81 35.8
MBI02_g29711_MAGBIO Magnolia biondii HOM05D005228 ORTHO05D006208 1.9e-06 56.6 83 38.6
QL08p013481 Quercus lobata HOM05D005228 ORTHO05D006208 1.9e-06 56.6 83 36.1
QL08p013801 Quercus lobata HOM05D005228 ORTHO05D006208 1.9e-06 56.6 83 36.1
DCAR_004174 Daucus carota HOM05D005409 ORTHO05D006456 2.5e-06 56.2 83 36.1
Duzib213G0859 Durio zibethinus HOM05D005228 ORTHO05D006208 2.5e-06 56.2 87 37.9
Duzib268G0515 Durio zibethinus HOM05D005228 ORTHO05D006208 2.5e-06 56.2 87 36.8
Nn1g03715 Nelumbo nucifera HOM05D004209 ORTHO05D004970 2.5e-06 56.2 81 37.0
Potri.004G031500 Populus trichocarpa HOM05D004209 ORTHO05D004970 2.5e-06 56.2 83 36.1
MSTRG.13163 Avicennia marina HOM05D004209 ORTHO05D004970 3.3e-06 55.8 83 36.1
BcaC09g51238 Brassica carinata HOM05D004209 ORTHO05D004970 3.3e-06 55.8 83 34.9
C01p15220 Brassica napus HOM05D004209 ORTHO05D004970 3.3e-06 55.8 83 34.9
BolC1t01473H Brassica oleracea HOM05D004209 ORTHO05D004970 3.3e-06 55.8 83 34.9
CiPaw.09G080300 Carya illinoinensis HOM05D004209 ORTHO05D004970 3.3e-06 55.8 83 37.3
Eucgr.D00854 Eucalyptus grandis HOM05D004209 ORTHO05D004970 3.3e-06 55.8 83 36.1
Nitab4.5_0002229g0110 Nicotiana tabacum HOM05D005228 ORTHO05D006208 3.3e-06 55.8 77 36.4
Oeu030990.2 Olea europaea HOM05D004209 ORTHO05D004970 3.3e-06 55.8 83 38.6
QL05p077152 Quercus lobata HOM05D004209 ORTHO05D004970 3.3e-06 55.8 83 37.3
Ah.09g237150 Amaranthus hybridus HOM05D004209 ORTHO05D004970 4.3e-06 55.5 84 35.7
A01p12630 Brassica napus HOM05D004209 ORTHO05D004970 4.3e-06 55.5 83 34.9
BraA01t01206Z Brassica rapa HOM05D004209 ORTHO05D004970 4.3e-06 55.5 83 34.9
COL.COLO4_31686 Corchorus olitorius HOM05D004209 ORTHO05D004970 4.3e-06 55.5 83 36.1
Haze_09593 Corylus avellana HOM05D005228 ORTHO05D006208 4.3e-06 55.5 77 40.3
Dinv17849 Davidia involucrata HOM05D004209 ORTHO05D004970 4.3e-06 55.5 83 34.9
Hma1.2p1_1054F.1_g252460 Hydrangea macrophylla HOM05D005228 ORTHO05D006208 4.3e-06 55.5 90 36.7
Manes.16G017000 Manihot esculenta HOM05D004209 ORTHO05D004970 4.3e-06 55.5 83 37.3
Potri.011G031300 Populus trichocarpa HOM05D004209 ORTHO05D004970 4.3e-06 55.5 83 36.1
QL93p0073_1246 Quercus lobata HOM05D004209 ORTHO05D004970 4.3e-06 55.5 83 37.3
Sabra11G0024700 Salix brachista HOM05D004209 ORTHO05D004970 4.3e-06 55.5 83 37.3
vmacro15841 Vaccinium macrocarpon HOM05D004209 ORTHO05D004970 4.3e-06 55.5 81 35.8
Lj2A275T36 Lonicera japonica HOM05D004209 ORTHO05D004970 5.6e-06 55.1 83 36.1
Lj2A275T37 Lonicera japonica HOM05D004209 ORTHO05D004970 5.6e-06 55.1 83 33.7
Nitab4.5_0002342g0120 Nicotiana tabacum HOM05D005228 ORTHO05D006208 5.6e-06 55.1 77 36.4
PSO210G3083 Papaver somniferum HOM05D004209 ORTHO05D004970 5.6e-06 55.1 83 36.1
PSO210G7066 Papaver somniferum HOM05D004209 ORTHO05D004970 5.6e-06 55.1 83 36.1
Hund23509 Selenicereus undatus HOM05D004209 ORTHO05D004970 5.6e-06 55.1 87 35.6
EL10Ac4g07988 Beta vulgaris HOM05D005228 ORTHO05D006208 7.3e-06 54.7 89 39.3
Carub.0006s3313 Capsella rubella HOM05D004209 ORTHO05D004970 7.3e-06 54.7 83 36.1
Carub.0007s2015 Capsella rubella HOM05D004209 ORTHO05D004970 7.3e-06 54.7 83 36.1
Duzib235G0889 Durio zibethinus HOM05D004209 ORTHO05D004970 7.3e-06 54.7 83 36.1
Migut.M01815 Erythranthe guttata HOM05D005228 ORTHO05D006208 7.3e-06 54.7 85 34.1
SEGI_28796 Sequoiadendron giganteum HOM05D004209 ORTHO05D004970 7.3e-06 54.7 80 36.2
HPP92_000863 Vanilla planifolia HOM05D004209 ORTHO05D004970 7.3e-06 54.7 83 38.6
A05p44560 Brassica napus HOM05D005228 ORTHO05D006208 9.6e-06 54.3 87 37.9
BraA05t23200Z Brassica rapa HOM05D005228 ORTHO05D006208 9.6e-06 54.3 87 37.9
unitig_21.g20230 Utricularia gibba HOM05D004209 ORTHO05D004970 9.6e-06 54.3 80 37.5


User provided reference genes

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