Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb076060 Zea mays HOM05D000225 ORTHO05D011080 1.1e-69 266.5 135 100.0
Zm00001eb283700 Zea mays HOM05D000225 ORTHO05D011080 1.1e-69 266.5 135 100.0
Zm00001eb341660 Zea mays HOM05D000225 ORTHO05D011080 7.8e-60 233.8 135 89.6
Zm00001eb176280 Zea mays HOM05D000225 ORTHO05D011080 4.9e-54 214.5 179 68.7
Zm00001eb400740 Zea mays HOM05D000225 ORTHO05D011080 2.7e-52 208.8 178 66.3
Zm00001eb292870 Zea mays HOM05D000225 ORTHO05D011080 1.0e-51 206.8 176 66.5
Zm00001eb018060 Zea mays HOM05D000225 ORTHO05D011080 4.7e-49 198.0 174 66.1
Zm00001eb250700 Zea mays HOM05D000225 ORTHO05D003554 4.7e-49 198.0 171 64.3
Zm00001eb259770 Zea mays HOM05D000225 ORTHO05D011080 3.4e-47 191.8 139 74.1
Zm00001eb364330 Zea mays HOM05D000225 ORTHO05D011080 2.9e-46 188.7 176 59.7
Os02g0681632 Oryza sativa ssp. japonica HOM05D000225 ORTHO05D011080 1.1e-45 186.8 172 60.5
Zm00001eb050000 Zea mays HOM05D000225 ORTHO05D011080 5.4e-45 184.5 142 72.5
Zm00001eb419280 Zea mays HOM05D000225 ORTHO05D011080 3.0e-43 178.7 161 63.4
Zm00001eb173550 Zea mays HOM05D000225 ORTHO05D011080 1.1e-42 176.8 154 63.6
Zm00001eb249460 Zea mays HOM05D000225 ORTHO05D011080 1.1e-42 176.8 174 60.3
Zm00001eb349400 Zea mays HOM05D000225 ORTHO05D011080 4.6e-36 154.8 135 64.4
Zm00001eb364310 Zea mays HOM05D003418 ORTHO05D011080 7.8e-36 154.1 117 73.5
Zm00001eb278750 Zea mays HOM05D000225 ORTHO05D011080 2.1e-33 146.0 141 61.0
Zm00001eb345360 Zea mays HOM05D000225 ORTHO05D011080 2.2e-30 136.0 121 61.2
Zm00001eb200020 Zea mays HOM05D000225 ORTHO05D011080 1.4e-29 133.3 121 61.2
Zm00001eb108870 Zea mays HOM05D000225 ORTHO05D011080 1.9e-29 132.9 121 60.3
Zm00001eb218790 Zea mays HOM05D000225 ORTHO05D011080 3.2e-29 132.1 121 57.9
Zm00001eb352010 Zea mays HOM05D000225 ORTHO05D011080 7.1e-29 131.0 72 91.7
Zm00001eb273190 Zea mays HOM05D000225 ORTHO05D011080 1.0e-27 127.1 127 59.8
Zm00001eb407110 Zea mays HOM05D000225 ORTHO05D011080 1.3e-27 126.7 71 88.7
Zm00001eb420690 Zea mays HOM05D000394 ORTHO05D011080 1.4e-24 116.7 68 86.8
Zm00001eb179520 Zea mays HOM05D000225 ORTHO05D011080 2.4e-24 115.9 75 81.3
Zm00001eb420680 Zea mays HOM05D000225 ORTHO05D011080 4.0e-24 115.2 75 81.3
Zm00001eb303310 Zea mays HOM05D000225 ORTHO05D011080 1.2e-23 113.6 73 79.5
Zm00001eb368730 Zea mays HOM05D000225 ORTHO05D011080 2.6e-23 112.5 118 58.5
Zm00001eb186160 Zea mays HOM05D000225 ORTHO05D011080 7.6e-23 110.9 98 65.3
Zm00001eb303320 Zea mays HOM05D000225 ORTHO05D011080 2.9e-22 109.0 72 77.8
Zm00001eb423270 Zea mays HOM05D000225 ORTHO05D011080 4.9e-22 108.2 63 85.7
Eucgr.H03181 Eucalyptus grandis HOM05D000225 ORTHO05D003554 6.7e-19 97.8 182 37.4
HPP92_014519 Vanilla planifolia HOM05D001408 ORTHO05D003554 4.3e-18 95.1 160 40.0
Sabra10G0064600 Salix brachista HOM05D000225 ORTHO05D003554 5.6e-18 94.7 176 36.9
Potri.008G160501 Populus trichocarpa HOM05D000225 ORTHO05D003554 2.8e-17 92.4 177 36.2
Potri.010G078700 Populus trichocarpa HOM05D000225 ORTHO05D003554 3.6e-17 92.0 176 35.8
Sabra08G0122400 Salix brachista HOM05D000225 ORTHO05D003554 3.6e-17 92.0 176 36.4
Potri.008G160600 Populus trichocarpa HOM05D000225 ORTHO05D003554 6.2e-17 91.3 176 35.8
TAR362G1029 Trochodendron aralioides HOM05D000225 ORTHO05D003554 1.1e-16 90.5 174 34.5
Ciclev10004551m.g Citrus clementina HOM05D000225 ORTHO05D003554 4.0e-16 88.6 177 35.0
Atru.chr4.2285 Acer truncatum HOM05D000225 ORTHO05D003554 5.3e-16 88.2 179 35.8
Nn1g02546 Nelumbo nucifera HOM05D000225 ORTHO05D011080 6.9e-16 87.8 171 34.5
PGSC0003DMG400006087 Solanum tuberosum HOM05D000225 ORTHO05D003554 9.0e-16 87.4 172 34.9
Prupe.1G027000 Prunus persica HOM05D000225 ORTHO05D003554 1.5e-15 86.7 174 36.2
QL06p015040 Quercus lobata HOM05D000225 ORTHO05D003554 1.5e-15 86.7 180 35.6
Thecc.04G243700 Theobroma cacao HOM05D000225 ORTHO05D003554 1.5e-15 86.7 177 35.0
Nn1g02547 Nelumbo nucifera HOM05D000225 ORTHO05D003554 2.0e-15 86.3 174 33.3
SHI00572 Sapria himalayana HOM05D000225 ORTHO05D003554 2.0e-15 86.3 179 36.9
Solyc09g083210.3 Solanum lycopersicum HOM05D000225 ORTHO05D003554 2.0e-15 86.3 174 33.3
Zm00001eb352000 Zea mays HOM05D000225 ORTHO05D011080 2.0e-15 86.3 73 67.1
PGR004G2440 Punica granatum HOM05D000225 ORTHO05D003554 3.4e-15 85.5 183 35.5
Nn3g19499 Nelumbo nucifera HOM05D000225 ORTHO05D003554 5.8e-15 84.7 173 34.1
VMungo0720G0757 Vigna mungo HOM05D000225 ORTHO05D003554 7.6e-15 84.3 176 35.8
Peaxi162Scf01416g00014 Petunia axillaris HOM05D000225 ORTHO05D003554 9.9e-15 84.0 168 35.1
CiPaw.01G192400 Carya illinoinensis HOM05D000225 ORTHO05D003554 1.3e-14 83.6 176 34.7
Ciclev10006699m.g Citrus clementina HOM05D000225 ORTHO05D011080 1.7e-14 83.2 179 34.6
Solyc09g083200.4 Solanum lycopersicum HOM05D000225 ORTHO05D003554 2.2e-14 82.8 172 32.6
PGSC0003DMG400006086 Solanum tuberosum HOM05D000225 ORTHO05D003554 2.2e-14 82.8 172 33.1
MSTRG.9933 Avicennia marina HOM05D000225 ORTHO05D003554 2.9e-14 82.4 175 33.1
MD13G1203700 Malus domestica HOM05D000225 ORTHO05D003554 3.8e-14 82.0 176 36.9
Manes.15G035700 Manihot esculenta HOM05D000225 ORTHO05D003554 3.8e-14 82.0 178 33.7
Sed0011890 Sechium edule HOM05D000225 ORTHO05D003554 6.4e-14 81.3 174 32.8
CANSAT78G0865 Cannabis sativa HOM05D000225 ORTHO05D003554 8.4e-14 80.9 179 33.5
Phvul.007G280200 Phaseolus vulgaris HOM05D000225 ORTHO05D003554 8.4e-14 80.9 178 34.8
Lalb_Chr03g0037921 Lupinus albus HOM05D000225 ORTHO05D003554 1.4e-13 80.1 170 32.9
MELO3C006481.2 Cucumis melo HOM05D000225 ORTHO05D003554 1.9e-13 79.7 182 34.1
Nitab4.5_0000525g0050 Nicotiana tabacum HOM05D000225 ORTHO05D011080 2.4e-13 79.3 176 31.2
Lj6g0021940 Lotus japonicus HOM05D000225 ORTHO05D003554 4.2e-13 78.6 175 33.1
FAN12G1174 Fragaria x ananassa HOM05D000225 ORTHO05D003554 5.5e-13 78.2 172 34.3
Duzib151G1111 Durio zibethinus HOM05D000225 ORTHO05D003554 7.1e-13 77.8 180 32.8
FvH4_4g02221 Fragaria vesca HOM05D000225 ORTHO05D003554 9.3e-13 77.4 172 33.7
MBI04_g35054_MAGBIO Magnolia biondii HOM05D000225 ORTHO05D003554 9.3e-13 77.4 169 33.7
SEGI_06251 Sequoiadendron giganteum HOM05D000225 ORTHO05D003554 1.2e-12 77.0 168 33.3
Nitab4.5_0000525g0010 Nicotiana tabacum HOM05D000225 ORTHO05D003554 1.6e-12 76.6 176 30.7
Nitab4.5_0004203g0010 Nicotiana tabacum HOM05D000225 ORTHO05D003554 1.6e-12 76.6 176 32.4
COL.COLO4_15766 Corchorus olitorius HOM05D000225 ORTHO05D003554 2.1e-12 76.3 178 32.6
Hund05492 Selenicereus undatus HOM05D000225 ORTHO05D003554 2.1e-12 76.3 183 34.4
SGA_v2.0_scaffold101G29773 Striga asiatica HOM05D000225 ORTHO05D003554 2.7e-12 75.9 176 33.5
vmacro15400 Vaccinium macrocarpon HOM05D000225 ORTHO05D003554 2.7e-12 75.9 199 30.7
GSVIVG01018093001 Vitis vinifera HOM05D000225 ORTHO05D003554 3.5e-12 75.5 173 33.5
Hma1.2p1_2099F.1_g313990 Hydrangea macrophylla HOM05D000225 ORTHO05D003554 6.0e-12 74.7 169 33.7
Gorai.011G164600 Gossypium raimondii HOM05D000225 ORTHO05D003554 7.9e-12 74.3 177 33.3
RcHm_v2.0_Chr4g0389541 Rosa chinensis HOM05D000225 ORTHO05D003554 7.9e-12 74.3 182 31.3
Sc19g0003890 Simmondsia chinensis HOM05D000225 ORTHO05D003554 7.9e-12 74.3 181 32.6
arahy.Tifrunner.gnm1.ann1.35XI12 Arachis hypogaea HOM05D000225 ORTHO05D003554 1.0e-11 73.9 181 32.0
arahy.Tifrunner.gnm1.ann1.2WY12S Arachis hypogaea HOM05D000225 ORTHO05D003554 1.8e-11 73.2 181 32.6
Cc00_g20680 Coffea canephora HOM05D000225 ORTHO05D003554 1.8e-11 73.2 179 35.8
Haze_11269 Corylus avellana HOM05D000225 ORTHO05D003554 1.8e-11 73.2 175 33.7
CsaV3_3G012700 Cucumis sativus L. HOM05D000225 ORTHO05D003554 1.8e-11 73.2 174 31.6
TWI09G0570 Tripterygium wilfordii HOM05D000225 ORTHO05D003554 1.8e-11 73.2 177 33.3
Rhsim02G0032400 Rhododendron simsii HOM05D000225 ORTHO05D003554 2.3e-11 72.8 178 32.6
SalBow2G2098 Salvia bowleyana HOM05D000225 ORTHO05D003554 2.3e-11 72.8 172 30.8
Gohir.D10G147500 Gossypium hirsutum HOM05D000225 ORTHO05D003554 3.0e-11 72.4 177 32.2
Cfa008400 Carpinus fangiana HOM05D000225 ORTHO05D003554 3.9e-11 72.0 175 32.6
Aqoxy2G03515 Aquilegia oxysepala HOM05D000225 ORTHO05D003554 5.1e-11 71.6 163 34.4
Ca_26325_v3 Cicer arietinum L. HOM05D000225 ORTHO05D003554 8.7e-11 70.9 184 29.9
DCAR_002357 Daucus carota HOM05D000225 ORTHO05D003554 1.1e-10 70.5 179 29.6
HanXRQChr03g0092501 Helianthus annuus HOM05D000225 ORTHO05D003554 1.5e-10 70.1 176 31.8
PSO210G5248 Papaver somniferum HOM05D000225 ORTHO05D003554 1.9e-10 69.7 170 32.4
GSVIVG01019039001 Vitis vinifera HOM05D000225 ORTHO05D003554 1.9e-10 69.7 168 31.0
CAN.G626.4 Capsicum annuum HOM05D000225 ORTHO05D003554 2.5e-10 69.3 150 31.3
PSO238G0035 Papaver somniferum HOM05D000225 ORTHO05D003554 4.3e-10 68.6 167 31.7
ATR0661G139 Amborella trichopoda HOM05D000225 ORTHO05D003554 5.6e-10 68.2 168 32.7
Glyma.02G000400 Glycine max HOM05D000225 ORTHO05D003554 5.6e-10 68.2 176 30.1
Gohir.D09G224100 Gossypium hirsutum HOM05D000225 ORTHO05D003554 5.6e-10 68.2 178 28.7
Gorai.006G245600 Gossypium raimondii HOM05D000225 ORTHO05D003554 5.6e-10 68.2 178 28.7
Ah.08g213660 Amaranthus hybridus HOM05D000225 ORTHO05D003554 1.6e-09 66.6 184 32.1
MSTRG.4088 Avicennia marina HOM05D000225 ORTHO05D003554 2.8e-09 65.9 175 29.1
Lsat_1_v5_gn_3_124400 Lactuca sativa HOM05D000225 ORTHO05D003554 3.7e-09 65.5 173 31.2
SEGI_11114 Sequoiadendron giganteum HOM05D000225 ORTHO05D003554 8.2e-09 64.3 166 31.9
Sed0003579 Sechium edule HOM05D000225 ORTHO05D003554 1.1e-08 63.9 138 34.1
EL10Ac7g17698 Beta vulgaris HOM05D000225 ORTHO05D003554 1.4e-08 63.5 184 29.3
HanXRQChr13g0424591 Helianthus annuus HOM05D000225 ORTHO05D003554 1.4e-08 63.5 176 30.1
Lj6A653G77 Lonicera japonica HOM05D000225 ORTHO05D003554 1.4e-08 63.5 142 33.8
Ciclev10027414m.g Citrus clementina HOM05D000225 ORTHO05D003554 1.8e-08 63.2 177 31.1
Zm00001eb009380 Zea mays HOM05D000225 ORTHO05D003554 3.1e-08 62.4 150 32.0
PGR102G0756 Punica granatum HOM05D000225 ORTHO05D003554 4.0e-08 62.0 174 32.8
Zm00001eb399560 Zea mays HOM05D000225 ORTHO05D003554 5.3e-08 61.6 151 32.5
Peaxi162Scf00019g00153 Petunia axillaris HOM05D000225 ORTHO05D003554 6.9e-08 61.2 176 30.1
Os03g0233300 Oryza sativa ssp. japonica HOM05D000225 ORTHO05D003554 1.2e-07 60.5 170 33.5
SEGI_29430 Sequoiadendron giganteum HOM05D000225 ORTHO05D003554 2.0e-07 59.7 170 30.0
CANSAT01G0562 Cannabis sativa HOM05D000225 ORTHO05D003554 2.6e-07 59.3 175 30.3
Prupe.7G147300 Prunus persica HOM05D000225 ORTHO05D003554 2.6e-07 59.3 169 31.4
DCAR_007516 Daucus carota HOM05D000225 ORTHO05D003554 3.4e-07 58.9 173 28.3
RcHm_v2.0_Chr2g0102941 Rosa chinensis HOM05D000225 ORTHO05D003554 3.4e-07 58.9 172 29.7
CiPaw.06G148400 Carya illinoinensis HOM05D000225 ORTHO05D003554 4.5e-07 58.5 157 30.6
Manes.13G134800 Manihot esculenta HOM05D000225 ORTHO05D003554 5.8e-07 58.2 175 32.0
SalBow1G5898 Salvia bowleyana HOM05D000225 ORTHO05D003554 5.8e-07 58.2 172 27.3
Sopen09g032130 Solanum pennellii HOM05D000225 ORTHO05D003554 5.8e-07 58.2 73 39.7
PGSC0003DMG400006088 Solanum tuberosum HOM05D000225 ORTHO05D003554 7.6e-07 57.8 71 43.7
AUR62008809 Chenopodium quinoa HOM05D000225 ORTHO05D003554 1.3e-06 57.0 173 29.5
Medtr8g078300 Medicago truncatula HOM05D000225 ORTHO05D003554 1.3e-06 57.0 169 30.2
TAR376G0295 Trochodendron aralioides HOM05D000225 ORTHO05D003554 1.3e-06 57.0 165 29.1
TWI09G0751 Tripterygium wilfordii HOM05D000225 ORTHO05D003554 1.7e-06 56.6 165 30.9
DCAR_010965 Daucus carota HOM05D000225 ORTHO05D003554 2.2e-06 56.2 175 27.4
Eucgr.H01926 Eucalyptus grandis HOM05D000225 ORTHO05D003554 2.2e-06 56.2 165 30.3
Eucgr.I02484 Eucalyptus grandis HOM05D000225 ORTHO05D003554 2.2e-06 56.2 164 28.7
AUR62025429 Chenopodium quinoa HOM05D000225 ORTHO05D003554 2.9e-06 55.8 173 29.5
Dinv44611 Davidia involucrata HOM05D000225 ORTHO05D003554 2.9e-06 55.8 74 39.2
Atru.chr3.495 Acer truncatum HOM05D000225 ORTHO05D003554 3.8e-06 55.5 168 29.2
CSS0010297 Camellia sinensis var. sinensis HOM05D000225 ORTHO05D003554 3.8e-06 55.5 59 45.8
SMO143G0296 Selaginella moellendorffii HOM05D000225 ORTHO05D003554 3.8e-06 55.5 164 29.3
CAN.G93.19 Capsicum annuum HOM05D000225 ORTHO05D003554 6.5e-06 54.7 177 29.4
FAN23G2134 Fragaria x ananassa HOM05D000225 ORTHO05D003554 6.5e-06 54.7 172 27.9
MBI16_g10978_MAGBIO Magnolia biondii HOM05D006999 ORTHO05D003554 6.5e-06 54.7 165 30.3
Haze_01638 Corylus avellana HOM05D000225 ORTHO05D003554 8.4e-06 54.3 65 43.1
FvH4_1g14270 Fragaria vesca HOM05D000225 ORTHO05D003554 8.4e-06 54.3 172 26.7


User provided reference genes

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