Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb075370 Zea mays HOM05D007279 ORTHO05D009212 8.6e-114 413.7 211 100.0
Os04g0539000 Oryza sativa ssp. japonica HOM05D007279 ORTHO05D009212 5.8e-70 268.1 219 68.0
AUR62007704 Chenopodium quinoa HOM05D007279 ORTHO05D009212 1.3e-58 230.3 209 58.9
AUR62013436 Chenopodium quinoa HOM05D007279 ORTHO05D009212 1.5e-57 226.9 209 57.9
EL10Ac1g01365 Beta vulgaris HOM05D007279 ORTHO05D009212 1.6e-56 223.4 182 61.5
TWI34G0215 Tripterygium wilfordii HOM05D007279 ORTHO05D009212 1.6e-56 223.4 210 59.5
TAR628G0029 Trochodendron aralioides HOM05D007279 ORTHO05D009212 6.2e-56 221.5 131 80.2
Manes.02G169000 Manihot esculenta HOM05D007279 ORTHO05D009212 8.1e-56 221.1 165 67.9
PSO528G0084 Papaver somniferum HOM05D007279 ORTHO05D009212 8.1e-56 221.1 204 57.8
Aqoxy6G00304 Aquilegia oxysepala HOM05D007279 ORTHO05D009212 1.4e-55 220.3 153 71.9
HanXRQChr02g0045151 Helianthus annuus HOM05D007279 ORTHO05D009212 1.8e-55 219.9 167 67.7
Psat5g084400 Pisum sativum HOM05D007279 ORTHO05D009212 1.8e-55 219.9 171 64.3
Ciclev10002484m.g Citrus clementina HOM05D007279 ORTHO05D009212 4.0e-55 218.8 144 75.0
COL.COLO4_33390 Corchorus olitorius HOM05D007279 ORTHO05D009212 4.0e-55 218.8 167 66.5
Nn5g28445 Nelumbo nucifera HOM05D007279 ORTHO05D009212 5.3e-55 218.4 134 76.9
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 6.9e-55 218.0 184 62.0
Lsat_1_v5_gn_1_7161 Lactuca sativa HOM05D007279 ORTHO05D009212 6.9e-55 218.0 167 66.5
PSO170G3576 Papaver somniferum HOM05D007279 ORTHO05D009212 6.9e-55 218.0 204 57.4
Sabra05G0138700 Salix brachista HOM05D007279 ORTHO05D009212 1.2e-54 217.2 211 56.9
MSTRG.1407 Avicennia marina HOM05D007279 ORTHO05D009212 1.5e-54 216.9 205 57.1
Duzib093G1369 Durio zibethinus HOM05D007279 ORTHO05D009212 2.0e-54 216.5 167 65.3
ClCG09G021820 Citrullus lanatus HOM05D007279 ORTHO05D009212 2.6e-54 216.1 137 73.0
arahy.Tifrunner.gnm1.ann1.03R76N Arachis hypogaea HOM05D007279 ORTHO05D009212 3.4e-54 215.7 180 63.9
arahy.Tifrunner.gnm1.ann1.G5JU44 Arachis hypogaea HOM05D007279 ORTHO05D009212 3.4e-54 215.7 180 63.9
Ah.05g169060 Amaranthus hybridus HOM05D007279 ORTHO05D009212 4.5e-54 215.3 180 62.2
Hma1.2p1_0880F.1_g231840 Hydrangea macrophylla HOM05D007279 ORTHO05D009212 4.5e-54 215.3 212 55.7
Medtr3g088645 Medicago truncatula HOM05D007279 ORTHO05D009212 4.5e-54 215.3 177 62.7
MD15G1133300 Malus domestica HOM05D007279 ORTHO05D009212 5.8e-54 214.9 201 59.2
Dinv27265 Davidia involucrata HOM05D007279 ORTHO05D009212 1.0e-53 214.2 207 59.4
THA.LOC104808254 Tarenaya hassleriana HOM05D007279 ORTHO05D009212 1.0e-53 214.2 213 55.9
CSS0035764 Camellia sinensis var. sinensis HOM05D007279 ORTHO05D009212 1.3e-53 213.8 169 66.3
CsaV3_7G022180 Cucumis sativus L. HOM05D007279 ORTHO05D009212 1.3e-53 213.8 181 60.8
FAN20G2640 Fragaria x ananassa HOM05D007279 ORTHO05D009212 1.3e-53 213.8 213 54.9
FAN24G0438 Fragaria x ananassa HOM05D007279 ORTHO05D009212 1.3e-53 213.8 213 54.5
GSVIVG01008801001 Vitis vinifera HOM05D007279 ORTHO05D009212 1.3e-53 213.8 174 63.2
CANSAT25G0430 Cannabis sativa HOM05D007279 ORTHO05D009212 1.7e-53 213.4 181 61.3
CAN.G405.7 Capsicum annuum HOM05D007279 ORTHO05D009212 1.7e-53 213.4 166 66.9
CiPaw.16G022500 Carya illinoinensis HOM05D007279 ORTHO05D009212 1.7e-53 213.4 127 79.5
Lj1g0002247 Lotus japonicus HOM05D007279 ORTHO05D009212 2.2e-53 213.0 193 59.1
Gohir.A02G110900 Gossypium hirsutum HOM05D007279 ORTHO05D009212 2.9e-53 212.6 174 63.8
Potri.005G183000 Populus trichocarpa HOM05D007279 ORTHO05D009212 2.9e-53 212.6 203 58.1
Sed0026443 Sechium edule HOM05D007279 ORTHO05D009212 2.9e-53 212.6 165 63.6
Solyc04g057980.3 Solanum lycopersicum HOM05D007279 ORTHO05D009212 2.9e-53 212.6 127 78.0
MBI03_g13490_MAGBIO Magnolia biondii HOM05D007279 ORTHO05D009212 3.8e-53 212.2 128 76.6
QL09p032239 Quercus lobata HOM05D007279 ORTHO05D009212 3.8e-53 212.2 211 54.0
Ca_16613_v3 Cicer arietinum L. HOM05D007279 ORTHO05D009212 4.9e-53 211.8 175 62.3
Eucgr.F03852 Eucalyptus grandis HOM05D007279 ORTHO05D009212 4.9e-53 211.8 170 64.1
FvH4_2g27960 Fragaria vesca HOM05D007279 ORTHO05D009212 4.9e-53 211.8 212 54.7
FAN27G1298 Fragaria x ananassa HOM05D007279 ORTHO05D009212 4.9e-53 211.8 212 54.7
Glyma.04G245200 Glycine max HOM05D007279 ORTHO05D009212 4.9e-53 211.8 216 56.9
Sopen04g025840 Solanum pennellii HOM05D007279 ORTHO05D009212 4.9e-53 211.8 127 78.0
ATR0681G064 Amborella trichopoda HOM05D007279 ORTHO05D009212 6.5e-53 211.5 127 77.2
DCAR_016660 Daucus carota HOM05D007279 ORTHO05D009212 8.4e-53 211.1 202 59.9
Gohir.D03G063100 Gossypium hirsutum HOM05D007279 ORTHO05D009212 8.4e-53 211.1 203 57.6
Gorai.013G108300 Gossypium raimondii HOM05D007279 ORTHO05D009212 8.4e-53 211.1 203 57.6
Cc10_g13680 Coffea canephora HOM05D007279 ORTHO05D009212 1.1e-52 210.7 125 77.6
Glyma.06G118000 Glycine max HOM05D007279 ORTHO05D009212 1.4e-52 210.3 217 57.1
Nitab4.5_0003485g0020 Nicotiana tabacum HOM05D007279 ORTHO05D009212 1.4e-52 210.3 166 66.3
MELO3C012712.2 Cucumis melo HOM05D007279 ORTHO05D009212 2.5e-52 209.5 166 65.1
Prupe.1G488900 Prunus persica HOM05D007279 ORTHO05D009212 2.5e-52 209.5 208 55.8
Cfa018422 Carpinus fangiana HOM05D007279 ORTHO05D009212 3.2e-52 209.1 175 62.9
ECA247G0566 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.2e-52 209.1 143 71.3
PGR044G1698 Punica granatum HOM05D007279 ORTHO05D009212 3.2e-52 209.1 210 56.2
Rhsim02G0114000 Rhododendron simsii HOM05D007279 ORTHO05D009212 3.2e-52 209.1 169 63.9
Migut.C01071 Erythranthe guttata HOM05D007279 ORTHO05D009212 7.1e-52 208.0 216 53.7
Lalb_Chr08g0241031 Lupinus albus HOM05D007279 ORTHO05D009212 7.1e-52 208.0 174 63.8
PGSC0003DMG400025319 Solanum tuberosum HOM05D007279 ORTHO05D009212 7.1e-52 208.0 165 64.8
Atru.chr13.1590 Acer truncatum HOM05D007279 ORTHO05D009212 9.3e-52 207.6 175 63.4
VMungo1309G2060 Vigna mungo HOM05D007279 ORTHO05D009212 1.6e-51 206.8 213 55.9
Nitab4.5_0000317g0110 Nicotiana tabacum HOM05D007279 ORTHO05D009212 2.7e-51 206.1 168 64.9
Peaxi162Scf00066g00422 Petunia axillaris HOM05D007279 ORTHO05D009212 2.7e-51 206.1 166 65.1
RcHm_v2.0_Chr6g0296781 Rosa chinensis HOM05D007279 ORTHO05D009212 2.7e-51 206.1 205 57.1
Aa31LG6G14860 Aethionema arabicum HOM05D007279 ORTHO05D009212 3.5e-51 205.7 189 58.7
Phvul.009G130400 Phaseolus vulgaris HOM05D007279 ORTHO05D009212 3.5e-51 205.7 211 56.4
Rhsim02G0113400 Rhododendron simsii HOM05D007279 ORTHO05D009212 4.6e-51 205.3 169 62.7
Sp7g35570 Schrenkiella parvula HOM05D007279 ORTHO05D009212 6.0e-51 204.9 189 57.1
BcaB03g12324 Brassica carinata HOM05D007279 ORTHO05D009212 7.9e-51 204.5 169 60.4
Thhalv10026209m.g Eutrema salsugineum HOM05D007279 ORTHO05D009212 7.9e-51 204.5 186 57.5
Sabra02G0061000 Salix brachista HOM05D007279 ORTHO05D009212 7.9e-51 204.5 174 61.5
CARHR246340 Cardamine hirsuta HOM05D007279 ORTHO05D009212 2.3e-50 203.0 197 55.3
Lj4A677T28 Lonicera japonica HOM05D007279 ORTHO05D009212 3.0e-50 202.6 173 60.7
Lj4A679T22 Lonicera japonica HOM05D007279 ORTHO05D009212 3.9e-50 202.2 166 62.7
A08p22940 Brassica napus HOM05D007279 ORTHO05D009212 5.1e-50 201.8 189 55.6
BraA08t34256Z Brassica rapa HOM05D007279 ORTHO05D009212 6.7e-50 201.4 169 59.8
BcaC01g00366 Brassica carinata HOM05D007279 ORTHO05D009212 1.9e-49 199.9 195 55.4
C03p78920 Brassica napus HOM05D007279 ORTHO05D009212 1.9e-49 199.9 195 55.4
BolC3t20136H Brassica oleracea HOM05D007279 ORTHO05D009212 1.9e-49 199.9 195 55.4
Rhsim02G0113900 Rhododendron simsii HOM05D007279 ORTHO05D009212 1.9e-49 199.9 194 57.2
unitig_46.g18082 Utricularia gibba HOM05D007279 ORTHO05D009212 5.7e-49 198.4 169 60.9
vmacro17341 Vaccinium macrocarpon HOM05D007279 ORTHO05D009212 5.7e-49 198.4 184 58.7
AL7G12720 Arabidopsis lyrata HOM05D007279 ORTHO05D009212 3.7e-48 195.7 189 54.5
AT4G37925 Arabidopsis thaliana HOM05D007279 ORTHO05D009212 8.2e-48 194.5 189 55.0
SEGI_28724 Sequoiadendron giganteum HOM05D007279 ORTHO05D009212 1.1e-47 194.1 143 65.0
Carub.0007s0229 Capsella rubella HOM05D007279 ORTHO05D009212 2.4e-47 193.0 189 53.4
CDE08G0899 Ceratophyllum demersum HOM05D007279 ORTHO05D009212 1.7e-45 186.8 169 59.8
Pp3c1_14910 Physcomitrium patens HOM05D007279 ORTHO05D009212 3.0e-42 176.0 124 65.3
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 8.2e-40 167.9 212 46.7
CBR_g26037 Chara braunii HOM05D007279 ORTHO05D009212 3.1e-39 166.0 152 55.9
SMO339G0044 Selaginella moellendorffii HOM05D007279 ORTHO05D009212 2.0e-38 163.3 117 65.8
Potri.002G077600 Populus trichocarpa HOM05D007279 ORTHO05D009212 2.5e-36 156.4 176 51.1
Mapoly0063s0013 Marchantia polymorpha HOM05D007279 ORTHO05D009212 3.6e-35 152.5 112 62.5
AagrBONN_evm.TU.Sc2ySwM_344.1177 Anthoceros agrestis HOM05D007279 ORTHO05D009212 6.7e-34 148.3 141 52.5
Zm00001eb427570 Zea mays HOM05D007279 ORTHO05D009212 6.3e-32 141.7 208 47.6
TPR.G6347 Trifolium pratense HOM05D007279 ORTHO05D009212 8.2e-32 141.4 86 74.4
AL3G19570 Arabidopsis lyrata HOM05D007279 ORTHO05D009212 2.0e-30 136.7 134 53.7
TAR623G1519 Trochodendron aralioides HOM05D007279 ORTHO05D009212 1.2e-27 127.5 141 49.6
Thecc.08G133700 Theobroma cacao HOM05D007279 ORTHO05D009212 4.7e-27 125.6 118 58.5
vmacro17338 Vaccinium macrocarpon HOM05D007279 ORTHO05D009212 3.0e-26 122.9 193 43.5
SalBow7G1271 Salvia bowleyana HOM05D007279 ORTHO05D009212 1.0e-18 97.8 211 35.1
vmacro17312 Vaccinium macrocarpon HOM05D007279 ORTHO05D009212 1.4e-18 97.4 107 51.4
Oeu047171.1 Olea europaea HOM05D004195 ORTHO05D005309 7.5e-09 65.1 105 44.8


User provided reference genes

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