Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb074550 Zea mays HOM05D003510 ORTHO05D004144 1.3e-123 446.4 230 100.0
Zm00001eb074540 Zea mays HOM05D003510 ORTHO05D004144 8.9e-40 167.9 131 61.8
Os02g0660800 Oryza sativa ssp. japonica HOM05D003510 ORTHO05D004144 7.8e-36 154.8 137 53.3
Os02g0659700 Oryza sativa ssp. japonica HOM05D003510 ORTHO05D004144 1.6e-33 147.1 137 53.3
Aqoxy3G03956 Aquilegia oxysepala HOM05D003510 ORTHO05D004144 1.4e-32 144.1 127 53.5
GSVIVG01011878001 Vitis vinifera HOM05D003510 ORTHO05D004144 2.4e-32 143.3 127 52.8
Migut.E00355 Erythranthe guttata HOM05D003510 ORTHO05D004144 3.1e-32 142.9 127 54.3
TAR371G0378 Trochodendron aralioides HOM05D003510 ORTHO05D004144 4.0e-32 142.5 128 53.9
Ah.02g127620 Amaranthus hybridus HOM05D003510 ORTHO05D004144 5.2e-32 142.1 127 54.3
PGR102G3338 Punica granatum HOM05D003510 ORTHO05D004144 5.2e-32 142.1 129 51.9
DCAR_023651 Daucus carota HOM05D003510 ORTHO05D004144 8.9e-32 141.4 143 49.7
Rhsim09G0106600 Rhododendron simsii HOM05D003510 ORTHO05D004144 2.0e-31 140.2 128 52.3
Gohir.D04G137800 Gossypium hirsutum HOM05D003510 ORTHO05D004144 4.4e-31 139.0 135 48.9
Gorai.012G122200 Gossypium raimondii HOM05D003510 ORTHO05D004144 4.4e-31 139.0 135 48.9
AagrBONN_evm.TU.Sc2ySwM_344.2496 Anthoceros agrestis HOM05D003510 ORTHO05D004144 5.8e-31 138.7 125 52.8
CiPaw.05G239200 Carya illinoinensis HOM05D003510 ORTHO05D004144 5.8e-31 138.7 198 43.4
GSVIVG01011876001 Vitis vinifera HOM05D003510 ORTHO05D004144 5.8e-31 138.7 124 53.2
Zm00001eb249670 Zea mays HOM05D003510 ORTHO05D004144 5.8e-31 138.7 163 46.6
Eucgr.B03007 Eucalyptus grandis HOM05D003510 ORTHO05D004144 7.6e-31 138.3 195 42.1
Hma1.2p1_0061F.1_g033710 Hydrangea macrophylla HOM05D003510 ORTHO05D004144 9.9e-31 137.9 127 50.4
HanXRQChr16g0529461 Helianthus annuus HOM05D003510 ORTHO05D004144 1.3e-30 137.5 144 47.2
Solyc04g007260.4 Solanum lycopersicum HOM05D003510 ORTHO05D004144 1.3e-30 137.5 128 52.3
Sopen04g002320 Solanum pennellii HOM05D003510 ORTHO05D004144 1.3e-30 137.5 128 52.3
THA.LOC104808154 Tarenaya hassleriana HOM05D003510 ORTHO05D004144 1.3e-30 137.5 127 52.0
EL10Ac6g14376 Beta vulgaris HOM05D003510 ORTHO05D004144 1.7e-30 137.1 127 51.2
Prupe.1G313100 Prunus persica HOM05D003510 ORTHO05D004144 1.7e-30 137.1 128 50.0
Ca_10364_v3 Cicer arietinum L. HOM05D003510 ORTHO05D004144 2.2e-30 136.7 127 51.2
PGSC0003DMG400005981 Solanum tuberosum HOM05D003510 ORTHO05D004144 2.2e-30 136.7 128 52.3
vmacro10568 Vaccinium macrocarpon HOM05D003510 ORTHO05D004144 2.9e-30 136.3 127 50.4
CANSAT01G1441 Cannabis sativa HOM05D003510 ORTHO05D004144 3.8e-30 136.0 148 48.0
MELO3C012260.2 Cucumis melo HOM05D003510 ORTHO05D004144 3.8e-30 136.0 147 47.6
Manes.14G104000 Manihot esculenta HOM05D003510 ORTHO05D004144 3.8e-30 136.0 127 51.2
Peaxi162Scf00564g00029 Petunia axillaris HOM05D003510 ORTHO05D004144 3.8e-30 136.0 144 47.2
MD16G1041000 Malus domestica HOM05D003510 ORTHO05D004144 4.9e-30 135.6 128 48.4
PSO063G2460 Papaver somniferum HOM05D003510 ORTHO05D004144 4.9e-30 135.6 127 49.6
Hund25056 Selenicereus undatus HOM05D003510 ORTHO05D004144 6.4e-30 135.2 124 52.4
CSS0018626 Camellia sinensis var. sinensis HOM05D003510 ORTHO05D004144 8.4e-30 134.8 166 44.6
Lj3A1013T42 Lonicera japonica HOM05D003510 ORTHO05D004144 8.4e-30 134.8 127 51.2
RcHm_v2.0_Chr4g0434941 Rosa chinensis HOM05D003510 ORTHO05D004144 8.4e-30 134.8 127 48.8
ECA234G2589 Erigeron canadensis HOM05D003510 ORTHO05D004144 1.1e-29 134.4 128 48.4
Atru.chr11.132 Acer truncatum HOM05D003510 ORTHO05D004144 1.4e-29 134.0 127 49.6
Ciclev10016740m.g Citrus clementina HOM05D003510 ORTHO05D004144 1.4e-29 134.0 128 49.2
FvH4_4g27130 Fragaria vesca HOM05D003510 ORTHO05D004144 1.4e-29 134.0 136 48.5
CANSAT35G1684 Cannabis sativa HOM05D003510 ORTHO05D004144 2.4e-29 133.3 132 48.5
CsaV3_5G034440 Cucumis sativus L. HOM05D003510 ORTHO05D004144 2.4e-29 133.3 166 44.0
QL01p040948 Quercus lobata HOM05D003510 ORTHO05D004144 2.4e-29 133.3 127 48.8
Sc11g0003500 Simmondsia chinensis HOM05D003510 ORTHO05D004144 2.4e-29 133.3 127 50.4
Cc11_g09950 Coffea canephora HOM05D003510 ORTHO05D004144 3.2e-29 132.9 120 51.7
arahy.Tifrunner.gnm1.ann1.VLLQ8N Arachis hypogaea HOM05D003510 ORTHO05D004144 4.2e-29 132.5 128 49.2
AUR62037321 Chenopodium quinoa HOM05D003510 ORTHO05D004144 4.2e-29 132.5 124 52.4
Duzib248G1132 Durio zibethinus HOM05D003510 ORTHO05D004144 4.2e-29 132.5 127 49.6
FAN12G0948 Fragaria x ananassa HOM05D003510 ORTHO05D004144 4.2e-29 132.5 126 50.0
CAN.G1052.1 Capsicum annuum HOM05D003510 ORTHO05D004144 5.4e-29 132.1 180 41.7
ClCG05G022600 Citrullus lanatus HOM05D003510 ORTHO05D004144 5.4e-29 132.1 134 47.0
Aqoxy1G03141 Aquilegia oxysepala HOM05D003510 ORTHO05D004144 7.1e-29 131.7 134 49.3
Haze_00607 Corylus avellana HOM05D003510 ORTHO05D004144 9.2e-29 131.3 124 49.2
FAN12G2466 Fragaria x ananassa HOM05D003510 ORTHO05D004144 9.2e-29 131.3 127 48.0
Lsat_1_v5_gn_4_15820 Lactuca sativa HOM05D003510 ORTHO05D004144 9.2e-29 131.3 194 40.2
FAN22G0292 Fragaria x ananassa HOM05D003510 ORTHO05D004144 1.2e-28 131.0 129 47.3
Lalb_Chr04g0254661 Lupinus albus HOM05D003510 ORTHO05D004144 1.2e-28 131.0 127 48.8
Cpa.g.sc65.42 Carica papaya HOM05D003510 ORTHO05D004144 1.6e-28 130.6 131 45.8
MELO3C012259.2 Cucumis melo HOM05D003510 ORTHO05D004144 1.6e-28 130.6 148 43.9
HPP92_015110 Vanilla planifolia HOM05D003510 ORTHO05D004144 1.6e-28 130.6 150 45.3
HPP92_015116 Vanilla planifolia HOM05D003510 ORTHO05D004144 1.6e-28 130.6 150 45.3
VMungo1215G1668 Vigna mungo HOM05D003510 ORTHO05D004144 1.6e-28 130.6 127 48.0
FAN12G1645 Fragaria x ananassa HOM05D003510 ORTHO05D004144 2.1e-28 130.2 123 50.4
TWI75G1742 Tripterygium wilfordii HOM05D003510 ORTHO05D004144 2.1e-28 130.2 192 40.6
Nitab4.5_0007398g0020 Nicotiana tabacum HOM05D003510 ORTHO05D004144 2.7e-28 129.8 121 55.4
unitig_27.g25253 Utricularia gibba HOM05D003510 ORTHO05D004144 2.7e-28 129.8 121 51.2
Phvul.003G030100 Phaseolus vulgaris HOM05D003510 ORTHO05D004144 6.0e-28 128.6 127 47.2
Migut.H02048 Erythranthe guttata HOM05D003510 ORTHO05D004144 7.8e-28 128.3 130 50.0
Sed0022764 Sechium edule HOM05D003510 ORTHO05D004144 7.8e-28 128.3 134 48.5
TPR.G27953 Trifolium pratense HOM05D003510 ORTHO05D004144 1.0e-27 127.9 182 40.1
Sopen04g002260 Solanum pennellii HOM05D003510 ORTHO05D004144 1.3e-27 127.5 127 49.6
FAN17G2584 Fragaria x ananassa HOM05D003510 ORTHO05D004144 1.7e-27 127.1 127 47.2
Thecc.02G226300 Theobroma cacao HOM05D003510 ORTHO05D004144 1.7e-27 127.1 127 48.8
Glyma.01G080400 Glycine max HOM05D003510 ORTHO05D004144 2.3e-27 126.7 127 46.5
Solyc04g007200.4 Solanum lycopersicum HOM05D003510 ORTHO05D004144 2.3e-27 126.7 127 49.6
RcHm_v2.0_Chr6g0286191 Rosa chinensis HOM05D003510 ORTHO05D004144 3.0e-27 126.3 131 46.6
RcHm_v2.0_Chr6g0286261 Rosa chinensis HOM05D003510 ORTHO05D004144 3.0e-27 126.3 131 46.6
PGSC0003DMG402015879 Solanum tuberosum HOM05D003510 ORTHO05D004144 3.0e-27 126.3 125 48.8
vmacro10567 Vaccinium macrocarpon HOM05D003510 ORTHO05D004144 3.0e-27 126.3 195 39.0
PGSC0003DMG400007750 Solanum tuberosum HOM05D003510 ORTHO05D004144 3.9e-27 125.9 127 49.6
PGSC0003DMG401015879 Solanum tuberosum HOM05D003510 ORTHO05D004144 5.1e-27 125.6 125 48.8
Lj2g0023320 Lotus japonicus HOM05D003510 ORTHO05D004144 6.6e-27 125.2 131 45.0
Lalb_Chr04g0254671 Lupinus albus HOM05D003510 ORTHO05D004144 6.6e-27 125.2 123 49.6
ATR1125G078 Amborella trichopoda HOM05D003510 ORTHO05D004144 8.7e-27 124.8 120 49.2
CANSAT35G0765 Cannabis sativa HOM05D003510 ORTHO05D004144 1.1e-26 124.4 140 42.9
COL.COLO4_04883 Corchorus olitorius HOM05D003510 ORTHO05D004144 1.1e-26 124.4 141 44.7
Psat2g082000 Pisum sativum HOM05D003510 ORTHO05D004144 1.1e-26 124.4 129 45.0
Lj7P525T18 Lonicera japonica HOM05D003510 ORTHO05D004144 1.9e-26 123.6 127 46.5
Medtr5g056390 Medicago truncatula HOM05D003510 ORTHO05D004144 1.9e-26 123.6 127 45.7
Nitab4.5_0000057g0210 Nicotiana tabacum HOM05D003510 ORTHO05D004144 1.9e-26 123.6 121 51.2
Lsat_1_v5_gn_5_163161 Lactuca sativa HOM05D003510 ORTHO05D004144 3.3e-26 122.9 147 40.1
Potri.010G123102 Populus trichocarpa HOM05D003510 ORTHO05D004144 3.3e-26 122.9 139 45.3
Cpa.g.sc65.43 Carica papaya HOM05D003510 ORTHO05D004144 4.3e-26 122.5 120 49.2
Medtr5g056230 Medicago truncatula HOM05D003510 ORTHO05D004144 7.3e-26 121.7 155 41.3
Carub.0002s1476 Capsella rubella HOM05D003510 ORTHO05D004144 9.6e-26 121.3 120 47.5
RcHm_v2.0_Chr4g0434951 Rosa chinensis HOM05D003510 ORTHO05D004144 1.3e-25 120.9 127 45.7
AagrBONN_evm.TU.Sc2ySwM_344.2495 Anthoceros agrestis HOM05D003510 ORTHO05D004144 2.1e-25 120.2 153 43.8
AT1G68280 Arabidopsis thaliana HOM05D003510 ORTHO05D004144 2.1e-25 120.2 126 44.4
AUR62034133 Chenopodium quinoa HOM05D003510 ORTHO05D004144 2.8e-25 119.8 149 39.6
AUR62034134 Chenopodium quinoa HOM05D003510 ORTHO05D004144 2.8e-25 119.8 135 42.2
AUR62044553 Chenopodium quinoa HOM05D003510 ORTHO05D004144 2.8e-25 119.8 135 42.2
AUR62044554 Chenopodium quinoa HOM05D003510 ORTHO05D004144 2.8e-25 119.8 135 42.2
SGA_v2.0_scaffold14G06881 Striga asiatica HOM05D003510 ORTHO05D004144 3.6e-25 119.4 155 40.6
BcaB03g15105 Brassica carinata HOM05D003510 ORTHO05D004144 4.8e-25 119.0 131 45.0
RcHm_v2.0_Chr6g0286141 Rosa chinensis HOM05D003510 ORTHO05D004144 4.8e-25 119.0 127 44.9
FAN12G3824 Fragaria x ananassa HOM05D003510 ORTHO05D004144 6.2e-25 118.6 153 39.9
SMO119G0319 Selaginella moellendorffii HOM05D003510 ORTHO05D004144 8.1e-25 118.2 121 46.3
Sp5g23330 Schrenkiella parvula HOM05D003510 ORTHO05D004144 1.1e-24 117.9 177 37.3
BraA07t31088Z Brassica rapa HOM05D003510 ORTHO05D004144 1.4e-24 117.5 127 44.1
CARHR060960 Cardamine hirsuta HOM05D003510 ORTHO05D004144 1.8e-24 117.1 121 44.6
HanXRQChr10g0288901 Helianthus annuus HOM05D003510 ORTHO05D004144 1.8e-24 117.1 122 46.7
BcaC08g46259 Brassica carinata HOM05D003510 ORTHO05D004144 2.4e-24 116.7 127 42.5
C06p41720 Brassica napus HOM05D003510 ORTHO05D004144 2.4e-24 116.7 127 42.5
FvH4_4g27160 Fragaria vesca HOM05D003510 ORTHO05D004144 2.4e-24 116.7 152 40.8
HanXRQChr03g0078631 Helianthus annuus HOM05D003510 ORTHO05D004144 2.4e-24 116.7 123 45.5
HanXRQChr10g0296841 Helianthus annuus HOM05D003510 ORTHO05D004144 2.4e-24 116.7 123 46.3
Aa31sc376G40 Aethionema arabicum HOM05D003510 ORTHO05D004144 4.0e-24 115.9 122 45.1
AL2G27110 Arabidopsis lyrata HOM05D003510 ORTHO05D004144 4.0e-24 115.9 121 44.6
AT1G68260 Arabidopsis thaliana HOM05D003510 ORTHO05D004144 4.0e-24 115.9 121 43.8
Solyc04g007190.4 Solanum lycopersicum HOM05D003510 ORTHO05D004144 4.0e-24 115.9 125 45.6
Carub.0001s3294 Capsella rubella HOM05D003510 ORTHO05D004144 5.3e-24 115.5 120 45.8
CANSAT35G1707 Cannabis sativa HOM05D003510 ORTHO05D004144 1.5e-23 114.0 123 46.3
RcHm_v2.0_Chr6g0286301 Rosa chinensis HOM05D003510 ORTHO05D004144 1.5e-23 114.0 127 41.7
Gohir.A04G098000 Gossypium hirsutum HOM05D003510 ORTHO05D004144 2.6e-23 113.2 135 43.0
Ah.01g017060 Amaranthus hybridus HOM05D003510 ORTHO05D004144 3.4e-23 112.8 128 41.4
Thhalv10019154m.g Eutrema salsugineum HOM05D003510 ORTHO05D004144 3.4e-23 112.8 121 45.5
THA.LOC104815461 Tarenaya hassleriana HOM05D003510 ORTHO05D004144 3.4e-23 112.8 127 44.1
arahy.Tifrunner.gnm1.ann1.LKJ3D4 Arachis hypogaea HOM05D003510 ORTHO05D004144 4.4e-23 112.5 128 44.5
Sabra10G0093200 Salix brachista HOM05D003510 ORTHO05D004144 4.4e-23 112.5 167 37.7
RcHm_v2.0_Chr6g0286321 Rosa chinensis HOM05D003510 ORTHO05D004144 5.8e-23 112.1 127 40.9
SGA_v2.0_scaffold73G24371 Striga asiatica HOM05D003510 ORTHO05D004144 5.8e-23 112.1 120 46.7
Carub.0001s3288 Capsella rubella HOM05D003510 ORTHO05D004144 7.6e-23 111.7 120 45.8
Oeu059502.1 Olea europaea HOM05D003510 ORTHO05D004144 1.3e-22 110.9 100 52.0
Sp1g30110 Schrenkiella parvula HOM05D003510 ORTHO05D004144 1.3e-22 110.9 120 41.7
DCAR_026739 Daucus carota HOM05D003510 ORTHO05D004144 1.7e-22 110.5 118 47.5
RcHm_v2.0_Chr6g0286291 Rosa chinensis HOM05D003510 ORTHO05D004144 6.4e-22 108.6 127 40.9
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 6.4e-22 108.6 164 37.8
Carub.0001s3293 Capsella rubella HOM05D003510 ORTHO05D004144 8.4e-22 108.2 130 40.8
CARHR286260 Cardamine hirsuta HOM05D003510 ORTHO05D004144 8.4e-22 108.2 170 35.9
AL1G49960 Arabidopsis lyrata HOM05D003510 ORTHO05D004144 2.4e-21 106.7 120 44.2
AT1G35290 Arabidopsis thaliana HOM05D003510 ORTHO05D004144 1.6e-20 104.0 115 44.3
CARHR220110 Cardamine hirsuta HOM05D003510 ORTHO05D004144 2.1e-20 103.6 152 37.5
THA.LOC104821911 Tarenaya hassleriana HOM05D003510 ORTHO05D004144 1.0e-19 101.3 136 40.4
BcaB02g07984 Brassica carinata HOM05D003510 ORTHO05D004144 3.9e-19 99.4 117 41.0
Ah.01g005250 Amaranthus hybridus HOM05D000873 ORTHO05D001654 2.5e-18 96.7 131 37.4
AL1G49980 Arabidopsis lyrata HOM05D003510 ORTHO05D004144 4.3e-18 95.9 109 44.0
AUR62023875 Chenopodium quinoa HOM05D003510 ORTHO05D004144 7.3e-18 95.1 100 46.0
Cre04.g213761 Chlamydomonas reinhardtii HOM05D003510 ORTHO05D004144 2.1e-17 93.6 186 36.0
DCAR_007249 Daucus carota HOM05D003510 ORTHO05D004144 2.1e-17 93.6 140 39.3
Migut.M00675 Erythranthe guttata HOM05D003510 ORTHO05D004144 3.6e-17 92.8 140 35.0
Actinidia16662 Actinidia chinensis HOM05D003510 ORTHO05D004144 1.1e-16 91.3 101 45.5
ECA234G3856 Erigeron canadensis HOM05D003510 ORTHO05D000001 1.1e-16 91.3 78 50.0
Gohir.A04G098050 Gossypium hirsutum HOM05D003510 ORTHO05D004144 3.1e-16 89.7 101 41.6
Gorai.012G122300 Gossypium raimondii HOM05D003510 ORTHO05D004144 1.2e-15 87.8 101 40.6
Nn4g23884 Nelumbo nucifera HOM05D003510 ORTHO05D004144 1.2e-15 87.8 93 46.2
HanXRQChr10g0300041 Helianthus annuus HOM05D003510 ORTHO05D004144 7.6e-15 85.1 123 38.2
SEGI_30670 Sequoiadendron giganteum HOM05D003510 ORTHO05D004144 1.3e-14 84.3 66 62.1
Os04g0553300 Oryza sativa ssp. japonica HOM05D003510 ORTHO05D004144 2.2e-14 83.6 138 45.7
AUR62002850 Chenopodium quinoa HOM05D003510 ORTHO05D004144 6.4e-14 82.0 70 55.7
Actinidia02892 Actinidia chinensis HOM05D003510 ORTHO05D004144 8.4e-14 81.6 83 49.4
BolC6t39254H Brassica oleracea HOM05D001294 ORTHO05D001178 1.9e-13 80.5 131 32.8
Gohir.D04G137850 Gossypium hirsutum HOM05D003510 ORTHO05D004144 4.2e-13 79.3 101 36.6
Mapoly0104s0006 Marchantia polymorpha HOM05D003510 ORTHO05D004144 4.2e-13 79.3 66 59.1
A09p18480 Brassica napus HOM05D003510 ORTHO05D004144 7.1e-13 78.6 121 34.7
AT1G35250 Arabidopsis thaliana HOM05D003510 ORTHO05D004144 1.0e-11 74.7 67 49.3
Psat0s3549g0120 Pisum sativum HOM05D003510 ORTHO05D004144 2.3e-11 73.6 70 45.7
Gohir.A04G098100 Gossypium hirsutum HOM05D003510 ORTHO05D004144 3.9e-11 72.8 86 38.4
SGA_v2.0_scaffold211G42096 Striga asiatica HOM05D003510 ORTHO05D004144 5.1e-11 72.4 74 48.6
AL1G50030 Arabidopsis lyrata HOM05D003510 ORTHO05D004144 6.2e-09 65.5 60 51.7
Zm00001eb249640 Zea mays HOM05D003510 ORTHO05D004144 8.1e-09 65.1 110 40.9
SMO012G0036 Selaginella moellendorffii HOM05D003510 ORTHO05D004144 9.0e-08 61.6 74 41.9
SalBow8G4707 Salvia bowleyana HOM05D003510 ORTHO05D004144 1.0e-06 58.2 90 36.7
AUR62044675 Chenopodium quinoa HOM05D003510 ORTHO05D004144 3.8e-06 56.2 66 37.9
SEGI_33057 Sequoiadendron giganteum HOM05D003510 ORTHO05D004144 3.8e-06 56.2 61 41.0
AUR62022283 Chenopodium quinoa HOM05D003510 ORTHO05D004144 4.9e-06 55.8 130 30.8
Medtr5g056300 Medicago truncatula HOM05D003510 ORTHO05D004144 6.4e-06 55.5 59 49.2


User provided reference genes

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