Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb073690 Zea mays HOM05D002054 ORTHO05D004936 2.9e-50 201.4 93 100.0
Zm00001eb337050 Zea mays HOM05D002054 ORTHO05D004936 2.5e-49 198.4 93 98.9
Zm00001eb122250 Zea mays HOM05D002054 ORTHO05D004936 6.2e-40 167.2 93 83.9
Os01g0179500 Oryza sativa ssp. japonica HOM05D002054 ORTHO05D004936 2.7e-35 151.8 93 76.3
GSVIVG01035731001 Vitis vinifera HOM05D002054 ORTHO05D004936 1.9e-17 92.4 89 47.2
AUR62024831 Chenopodium quinoa HOM05D002054 ORTHO05D004936 3.6e-16 88.2 91 41.8
Dinv30217 Davidia involucrata HOM05D002054 ORTHO05D004936 3.6e-16 88.2 92 44.6
Atru.chr7.2318 Acer truncatum HOM05D002054 ORTHO05D004936 4.7e-16 87.8 91 42.9
EL10Ac2g02532 Beta vulgaris HOM05D002054 ORTHO05D004936 6.2e-16 87.4 89 40.4
TAR383G0292 Trochodendron aralioides HOM05D002054 ORTHO05D004936 1.1e-15 86.7 81 44.4
Sc09g0008880 Simmondsia chinensis HOM05D002054 ORTHO05D004936 1.4e-15 86.3 91 41.8
Sabra18G0035700 Salix brachista HOM05D002054 ORTHO05D004936 2.4e-15 85.5 92 45.7
Actinidia15714 Actinidia chinensis HOM05D002054 ORTHO05D004936 3.1e-15 85.1 92 42.4
ATR0037G018 Amborella trichopoda HOM05D002054 ORTHO05D004936 3.1e-15 85.1 88 42.0
Sed0018977 Sechium edule HOM05D002054 ORTHO05D004936 3.1e-15 85.1 89 43.8
Dinv35877 Davidia involucrata HOM05D002054 ORTHO05D004936 5.2e-15 84.3 92 44.6
MSTRG.25879 Avicennia marina HOM05D002054 ORTHO05D004936 6.8e-15 84.0 93 40.9
CSS0008422 Camellia sinensis var. sinensis HOM05D002054 ORTHO05D004936 6.8e-15 84.0 92 42.4
CSS0015303 Camellia sinensis var. sinensis HOM05D002054 ORTHO05D004936 6.8e-15 84.0 92 42.4
MBI01_g03365_MAGBIO Magnolia biondii HOM05D002054 ORTHO05D004936 6.8e-15 84.0 91 40.7
Nn8g39260 Nelumbo nucifera HOM05D002054 ORTHO05D004936 6.8e-15 84.0 90 42.2
Glyma.17G204700 Glycine max HOM05D002054 ORTHO05D004936 2.0e-14 82.4 88 38.6
Lj8A609T43 Lonicera japonica HOM05D002054 ORTHO05D004936 2.0e-14 82.4 92 42.4
Manes.16G068600 Manihot esculenta HOM05D002054 ORTHO05D004936 2.0e-14 82.4 72 45.8
CANSAT25G1939 Cannabis sativa HOM05D002054 ORTHO05D004936 2.6e-14 82.0 89 44.9
AUR62032386 Chenopodium quinoa HOM05D002054 ORTHO05D004936 2.6e-14 82.0 91 40.7
Glyma.14G129700 Glycine max HOM05D002054 ORTHO05D004936 2.6e-14 82.0 88 38.6
Solyc08g067920.3 Solanum lycopersicum HOM05D002054 ORTHO05D004936 2.6e-14 82.0 85 42.4
Sopen08g021830 Solanum pennellii HOM05D002054 ORTHO05D004936 3.4e-14 81.6 85 42.4
FAN15G1142 Fragaria x ananassa HOM05D002054 ORTHO05D004936 5.8e-14 80.9 92 38.0
FvH4_2g30210 Fragaria vesca HOM05D002054 ORTHO05D004936 9.9e-14 80.1 92 38.0
FAN24G2685 Fragaria x ananassa HOM05D002054 ORTHO05D004936 9.9e-14 80.1 92 38.0
SEGI_27449 Sequoiadendron giganteum HOM05D002054 ORTHO05D004936 1.3e-13 79.7 88 38.6
CiPaw.07G217100 Carya illinoinensis HOM05D002054 ORTHO05D004936 1.7e-13 79.3 92 39.1
Haze_21629 Corylus avellana HOM05D002054 ORTHO05D004936 2.2e-13 79.0 92 39.1
Nn2g11817 Nelumbo nucifera HOM05D002054 ORTHO05D004936 2.2e-13 79.0 93 35.5
Glyma.17G204300 Glycine max HOM05D002054 ORTHO05D004936 2.9e-13 78.6 88 39.8
Hund25656 Selenicereus undatus HOM05D002054 ORTHO05D004936 2.9e-13 78.6 91 40.7
vmacro05452 Vaccinium macrocarpon HOM05D002054 ORTHO05D004936 2.9e-13 78.6 92 41.3
QL12p031184 Quercus lobata HOM05D002054 ORTHO05D004936 3.8e-13 78.2 92 38.0
FAN27G0259 Fragaria x ananassa HOM05D002054 ORTHO05D004936 4.9e-13 77.8 89 38.2
Gohir.A13G203700 Gossypium hirsutum HOM05D002054 ORTHO05D004936 4.9e-13 77.8 92 39.1
TWI34G0955 Tripterygium wilfordii HOM05D002054 ORTHO05D004936 4.9e-13 77.8 89 40.4
Medtr1g010290 Medicago truncatula HOM05D002054 ORTHO05D004936 6.4e-13 77.4 88 42.0
Phvul.009G098700 Phaseolus vulgaris HOM05D002054 ORTHO05D004936 6.4e-13 77.4 92 41.3
RcHm_v2.0_Chr6g0312671 Rosa chinensis HOM05D002054 ORTHO05D004936 6.4e-13 77.4 89 38.2
Sed0026318 Sechium edule HOM05D002054 ORTHO05D004936 6.4e-13 77.4 89 40.4
CSS0040563 Camellia sinensis var. sinensis HOM05D002054 ORTHO05D004936 8.4e-13 77.0 92 37.0
Gohir.A07G038500 Gossypium hirsutum HOM05D002054 ORTHO05D004936 8.4e-13 77.0 82 40.2
Phvul.001G055900 Phaseolus vulgaris HOM05D002054 ORTHO05D004936 8.4e-13 77.0 88 38.6
Psat6g031120 Pisum sativum HOM05D002054 ORTHO05D004936 8.4e-13 77.0 88 43.2
SHI18618 Sapria himalayana HOM05D002054 ORTHO05D004936 8.4e-13 77.0 90 38.9
TAR624G1047 Trochodendron aralioides HOM05D002054 ORTHO05D004936 8.4e-13 77.0 89 41.6
Cfa013215 Carpinus fangiana HOM05D002054 ORTHO05D004936 1.1e-12 76.6 92 38.0
CiPaw.08G016200 Carya illinoinensis HOM05D002054 ORTHO05D004936 1.1e-12 76.6 92 37.0
ClCG05G017240 Citrullus lanatus HOM05D002054 ORTHO05D004936 1.1e-12 76.6 89 40.4
Glyma.14G129600 Glycine max HOM05D002054 ORTHO05D004936 1.1e-12 76.6 88 37.5
HPP92_009885 Vanilla planifolia HOM05D002054 ORTHO05D004936 1.1e-12 76.6 93 38.7
CsaV3_3G046720 Cucumis sativus L. HOM05D002054 ORTHO05D004936 1.4e-12 76.3 89 39.3
Gohir.D13G209000 Gossypium hirsutum HOM05D002054 ORTHO05D004936 1.4e-12 76.3 92 38.0
Gorai.013G238100 Gossypium raimondii HOM05D002054 ORTHO05D004936 1.4e-12 76.3 92 38.0
Ca_12906_v3 Cicer arietinum L. HOM05D002054 ORTHO05D004936 1.9e-12 75.9 91 42.9
Lj5g0002104 Lotus japonicus HOM05D002054 ORTHO05D004936 1.9e-12 75.9 88 38.6
Gohir.D07G042600 Gossypium hirsutum HOM05D002054 ORTHO05D004936 2.4e-12 75.5 82 39.0
Gorai.001G045600 Gossypium raimondii HOM05D002054 ORTHO05D004936 2.4e-12 75.5 82 39.0
Duzib187G1611 Durio zibethinus HOM05D002054 ORTHO05D004936 3.2e-12 75.1 85 38.8
Migut.E01505 Erythranthe guttata HOM05D002054 ORTHO05D004936 3.2e-12 75.1 91 38.5
Lalb_Chr23g0268991 Lupinus albus HOM05D002054 ORTHO05D004936 3.2e-12 75.1 89 41.6
Aqoxy7G01826 Aquilegia oxysepala HOM05D002054 ORTHO05D004936 4.2e-12 74.7 90 41.1
arahy.Tifrunner.gnm1.ann1.WIN44D Arachis hypogaea HOM05D002054 ORTHO05D004936 4.2e-12 74.7 92 41.3
FAN20G1010 Fragaria x ananassa HOM05D002054 ORTHO05D004936 4.2e-12 74.7 92 37.0
Lalb_Chr22g0361331 Lupinus albus HOM05D002054 ORTHO05D004936 4.2e-12 74.7 84 40.5
Sabra06G0192700 Salix brachista HOM05D002054 ORTHO05D004936 4.2e-12 74.7 81 43.2
arahy.Tifrunner.gnm1.ann1.LJCF3U Arachis hypogaea HOM05D002054 ORTHO05D004936 7.1e-12 73.9 92 41.3
Lalb_Chr08g0243761 Lupinus albus HOM05D002054 ORTHO05D004936 7.1e-12 73.9 92 40.2
Ah.12g063070 Amaranthus hybridus HOM05D002054 ORTHO05D004936 9.3e-12 73.6 91 37.4
MSTRG.1650 Avicennia marina HOM05D002054 ORTHO05D004936 9.3e-12 73.6 89 40.4
MELO3C003664.2 Cucumis melo HOM05D002054 ORTHO05D004936 9.3e-12 73.6 89 39.3
Prupe.1G466100 Prunus persica HOM05D002054 ORTHO05D004936 9.3e-12 73.6 89 37.1
Ciclev10007235m.g Citrus clementina HOM05D002054 ORTHO05D004936 1.2e-11 73.2 92 40.2
Eucgr.C01819 Eucalyptus grandis HOM05D002054 ORTHO05D004936 1.2e-11 73.2 88 40.9
SGA_v2.0_scaffold448G51787 Striga asiatica HOM05D002054 ORTHO05D004936 1.2e-11 73.2 93 41.9
VMungo1309G1581 Vigna mungo HOM05D002054 ORTHO05D004936 1.2e-11 73.2 89 40.4
Eucgr.L00986 Eucalyptus grandis HOM05D002054 ORTHO05D004936 1.6e-11 72.8 88 40.9
COL.COLO4_24072 Corchorus olitorius HOM05D002054 ORTHO05D004936 2.1e-11 72.4 89 38.2
Potri.018G034900 Populus trichocarpa HOM05D002054 ORTHO05D004936 2.1e-11 72.4 82 42.7
Duzib150G0930 Durio zibethinus HOM05D002054 ORTHO05D004936 2.7e-11 72.0 92 37.0
Eucgr.C01562 Eucalyptus grandis HOM05D002054 ORTHO05D004936 2.7e-11 72.0 88 40.9
CAN.G679.11 Capsicum annuum HOM05D002054 ORTHO05D004936 3.5e-11 71.6 72 43.1
Oeu045173.1 Olea europaea HOM05D002054 ORTHO05D004936 3.5e-11 71.6 88 40.9
Potri.006G246200 Populus trichocarpa HOM05D002054 ORTHO05D004936 4.6e-11 71.2 74 43.2
unitig_747.g21877 Utricularia gibba HOM05D002054 ORTHO05D004936 4.6e-11 71.2 92 33.7
Cpa.g.sc91.4 Carica papaya HOM05D002054 ORTHO05D004936 6.0e-11 70.9 89 36.0
Oeu027165.1 Olea europaea HOM05D002054 ORTHO05D004936 6.0e-11 70.9 92 38.0
Thecc.09G143700 Theobroma cacao HOM05D002054 ORTHO05D004936 6.0e-11 70.9 89 36.0
VMungo0647G1247 Vigna mungo HOM05D002054 ORTHO05D004936 6.0e-11 70.9 88 34.1
DCAR_003068 Daucus carota HOM05D002054 ORTHO05D004936 1.0e-10 70.1 93 37.6
MD08G1135600 Malus domestica HOM05D002054 ORTHO05D004936 1.0e-10 70.1 83 37.3
Carub.0007s0792 Capsella rubella HOM05D002054 ORTHO05D004936 1.3e-10 69.7 92 33.7
Cc08_g08260 Coffea canephora HOM05D002054 ORTHO05D004936 1.3e-10 69.7 91 36.3
MD15G1114600 Malus domestica HOM05D002054 ORTHO05D004936 1.3e-10 69.7 83 37.3
SGA_v2.0_scaffold27G11503 Striga asiatica HOM05D002054 ORTHO05D004936 1.3e-10 69.7 77 39.0
TWI63G0485 Tripterygium wilfordii HOM05D002054 ORTHO05D004936 1.3e-10 69.7 92 34.8
CDE04G2426 Ceratophyllum demersum HOM05D002054 ORTHO05D004936 1.7e-10 69.3 90 34.4
Migut.A00268 Erythranthe guttata HOM05D002054 ORTHO05D004936 1.7e-10 69.3 91 36.3
unitig_0.g2812 Utricularia gibba HOM05D002054 ORTHO05D004936 3.0e-10 68.6 92 34.8
Duzib168G1204 Durio zibethinus HOM05D002054 ORTHO05D004936 3.9e-10 68.2 89 37.1
Pp3c7_14100 Physcomitrium patens HOM05D002054 ORTHO05D004936 3.9e-10 68.2 115 33.0
PGR044G1488 Punica granatum HOM05D002054 ORTHO05D004936 3.9e-10 68.2 74 43.2
TAR636G2779 Trochodendron aralioides HOM05D002054 ORTHO05D004936 3.9e-10 68.2 89 37.1
MSTRG.14005 Avicennia marina HOM05D002054 ORTHO05D004936 5.1e-10 67.8 94 37.2
Nitab4.5_0005258g0030 Nicotiana tabacum HOM05D002054 ORTHO05D004936 5.1e-10 67.8 72 40.3
CDE02G2261 Ceratophyllum demersum HOM05D002054 ORTHO05D004936 6.6e-10 67.4 90 34.4
Lsat_1_v5_gn_5_45480 Lactuca sativa HOM05D002054 ORTHO05D004936 6.6e-10 67.4 72 37.5
Pp3c11_12130 Physcomitrium patens HOM05D002054 ORTHO05D004936 6.6e-10 67.4 84 40.5
Sp7g30390 Schrenkiella parvula HOM05D002054 ORTHO05D004936 6.6e-10 67.4 90 36.7
THA.LOC104819891 Tarenaya hassleriana HOM05D002054 ORTHO05D004936 6.6e-10 67.4 94 34.0
Mapoly0176s0001 Marchantia polymorpha HOM05D002054 ORTHO05D004936 1.9e-09 65.9 96 35.4
ECA246G4952 Erigeron canadensis HOM05D002054 ORTHO05D004936 2.5e-09 65.5 89 33.7
Thhalv10024206m.g Eutrema salsugineum HOM05D002054 ORTHO05D004936 3.3e-09 65.1 92 34.8
HanXRQChr12g0381921 Helianthus annuus HOM05D002054 ORTHO05D004936 3.3e-09 65.1 89 36.0
DCAR_007679 Daucus carota HOM05D002054 ORTHO05D004936 5.6e-09 64.3 114 28.9
CARHR240590 Cardamine hirsuta HOM05D002054 ORTHO05D004936 7.3e-09 63.9 92 33.7
AL7G19140 Arabidopsis lyrata HOM05D002054 ORTHO05D004936 9.6e-09 63.5 92 34.8
Nitab4.5_0000125g0100 Nicotiana tabacum HOM05D002054 ORTHO05D004936 9.6e-09 63.5 91 33.0
PSO063G3196 Papaver somniferum HOM05D002054 ORTHO05D004936 9.6e-09 63.5 73 37.0
PSO782G2545 Papaver somniferum HOM05D002054 ORTHO05D004936 9.6e-09 63.5 73 37.0
Aa31sc102G50 Aethionema arabicum HOM05D002054 ORTHO05D004936 2.1e-08 62.4 91 37.4
BcaC09g52055 Brassica carinata HOM05D002054 ORTHO05D004936 3.6e-08 61.6 94 34.0
C01p06310 Brassica napus HOM05D002054 ORTHO05D004936 3.6e-08 61.6 94 34.0
BolC1t00629H Brassica oleracea HOM05D002054 ORTHO05D004936 3.6e-08 61.6 94 34.0
A01p05730 Brassica napus HOM05D002054 ORTHO05D004936 4.8e-08 61.2 94 33.0
BraA01t00543Z Brassica rapa HOM05D002054 ORTHO05D004936 4.8e-08 61.2 94 33.0
AT4G32620 Arabidopsis thaliana HOM05D002054 ORTHO05D004936 6.2e-08 60.8 92 31.5
CBR_g45468 Chara braunii HOM05D002054 ORTHO05D004936 6.2e-08 60.8 84 36.9
Rhsim07G0154400 Rhododendron simsii HOM05D002054 ORTHO05D004936 1.2e-06 56.6 59 42.4
SalBow4G1030 Salvia bowleyana HOM05D002054 ORTHO05D004936 5.8e-06 54.3 127 26.8
Peaxi162Scf00105g01221 Petunia axillaris HOM05D002054 ORTHO05D004936 7.6e-06 53.9 57 40.4
PGSC0003DMG400014480 Solanum tuberosum HOM05D002054 ORTHO05D004936 7.6e-06 53.9 57 38.6


User provided reference genes

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