Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb072570 Zea mays HOM05D005182 ORTHO05D006631 1.3e-93 346.3 167 100.0
CANSAT64G2419 Cannabis sativa HOM05D005182 ORTHO05D006631 9.0e-66 253.8 145 78.6
Phvul.004G010800 Phaseolus vulgaris HOM05D005182 ORTHO05D006631 4.5e-65 251.5 154 74.0
Manes.17G115200 Manihot esculenta HOM05D005182 ORTHO05D006631 5.8e-65 251.1 159 71.1
Lj2g0004707 Lotus japonicus HOM05D005182 ORTHO05D006631 7.6e-65 250.8 145 77.2
VMungo0464G0237 Vigna mungo HOM05D005182 ORTHO05D006631 7.6e-65 250.8 145 77.2
TAR629G2348 Trochodendron aralioides HOM05D005182 ORTHO05D006631 2.9e-64 248.8 150 75.3
COL.COLO4_29086 Corchorus olitorius HOM05D005182 ORTHO05D006631 3.8e-64 248.4 145 76.6
Aqoxy3G02839 Aquilegia oxysepala HOM05D005182 ORTHO05D006631 8.4e-64 247.3 150 74.7
Ciclev10016757m.g Citrus clementina HOM05D005182 ORTHO05D006631 8.4e-64 247.3 147 76.9
Glyma.05G004900 Glycine max HOM05D005182 ORTHO05D006631 8.4e-64 247.3 145 76.6
Atru.chr6.2358 Acer truncatum HOM05D005182 ORTHO05D006631 2.4e-63 245.7 145 77.9
QL02p075210 Quercus lobata HOM05D005182 ORTHO05D006631 2.4e-63 245.7 145 76.6
TPR.G14069 Trifolium pratense HOM05D005182 ORTHO05D006631 3.2e-63 245.4 172 66.9
TWI12G0687 Tripterygium wilfordii HOM05D005182 ORTHO05D006631 3.2e-63 245.4 145 75.9
MBI16_g14596_MAGBIO Magnolia biondii HOM05D005182 ORTHO05D006631 4.2e-63 245.0 149 75.2
Actinidia06755 Actinidia chinensis HOM05D005182 ORTHO05D006631 1.2e-62 243.4 145 74.5
Medtr6g005390 Medicago truncatula HOM05D005182 ORTHO05D006631 1.2e-62 243.4 154 71.4
Sabra01G0148000 Salix brachista HOM05D005182 ORTHO05D006631 1.2e-62 243.4 147 73.5
Ca_04172_v3 Cicer arietinum L. HOM05D005182 ORTHO05D006631 1.6e-62 243.0 147 75.5
DCAR_011246 Daucus carota HOM05D005182 ORTHO05D006631 1.6e-62 243.0 150 72.0
Nn3g16771 Nelumbo nucifera HOM05D005182 ORTHO05D006631 1.6e-62 243.0 151 74.2
Gohir.D07G229100 Gossypium hirsutum HOM05D005182 ORTHO05D006631 2.1e-62 242.7 166 68.1
Gorai.001G264200 Gossypium raimondii HOM05D005182 ORTHO05D006631 2.1e-62 242.7 166 68.1
PGR024G0002 Punica granatum HOM05D005182 ORTHO05D006631 3.5e-62 241.9 145 75.2
Gohir.A07G222400 Gossypium hirsutum HOM05D005182 ORTHO05D006631 4.6e-62 241.5 145 74.5
Potri.001G178800 Populus trichocarpa HOM05D005182 ORTHO05D006631 7.9e-62 240.7 145 73.8
CiPaw.02G035100 Carya illinoinensis HOM05D005182 ORTHO05D006631 1.0e-61 240.4 150 71.3
MD09G1028700 Malus domestica HOM05D005182 ORTHO05D006631 1.0e-61 240.4 150 70.7
Cc07_g01870 Coffea canephora HOM05D005182 ORTHO05D006631 1.8e-61 239.6 147 73.5
Psat1g190920 Pisum sativum HOM05D005182 ORTHO05D006631 2.3e-61 239.2 151 72.2
SalBow1G7073 Salvia bowleyana HOM05D005182 ORTHO05D006631 2.3e-61 239.2 147 74.1
Cpa.g.c28071.2 Carica papaya HOM05D005182 ORTHO05D006631 3.0e-61 238.8 162 66.0
SGA_v2.0_scaffold481G52321 Striga asiatica HOM05D005182 ORTHO05D006631 3.9e-61 238.4 144 75.0
Thecc.04G015200 Theobroma cacao HOM05D005182 ORTHO05D006631 3.9e-61 238.4 145 73.8
Peaxi162Scf00129g01422 Petunia axillaris HOM05D005182 ORTHO05D006631 5.1e-61 238.0 144 73.6
Peaxi162Scf00304g01217 Petunia axillaris HOM05D005182 ORTHO05D006631 5.1e-61 238.0 144 74.3
CAN.G1799.12 Capsicum annuum HOM05D005182 ORTHO05D006631 6.7e-61 237.7 144 72.9
Dinv35097 Davidia involucrata HOM05D005182 ORTHO05D006631 6.7e-61 237.7 158 67.1
Nitab4.5_0005432g0010 Nicotiana tabacum HOM05D005182 ORTHO05D006631 1.1e-60 236.9 144 72.2
Solyc02g086560.3 Solanum lycopersicum HOM05D005182 ORTHO05D006631 1.1e-60 236.9 153 70.6
Nitab4.5_0002682g0020 Nicotiana tabacum HOM05D005182 ORTHO05D006631 1.9e-60 236.1 161 66.5
Cfa007391 Carpinus fangiana HOM05D005182 ORTHO05D006631 2.5e-60 235.7 150 68.7
PGR142G3360 Punica granatum HOM05D005182 ORTHO05D006631 2.5e-60 235.7 145 74.5
Sopen02g031300 Solanum pennellii HOM05D005182 ORTHO05D006631 4.3e-60 235.0 153 69.9
vmacro04855 Vaccinium macrocarpon HOM05D005182 ORTHO05D006631 4.3e-60 235.0 148 72.3
ATR0661G518 Amborella trichopoda HOM05D005182 ORTHO05D006631 5.6e-60 234.6 148 70.9
Haze_14718 Corylus avellana HOM05D005182 ORTHO05D006631 5.6e-60 234.6 150 69.3
RcHm_v2.0_Chr2g0173081 Rosa chinensis HOM05D005182 ORTHO05D006631 5.6e-60 234.6 145 71.0
ECA246G2600 Erigeron canadensis HOM05D005182 ORTHO05D006631 9.6e-60 233.8 150 69.3
FAN21G0797 Fragaria x ananassa HOM05D005182 ORTHO05D006631 1.3e-59 233.4 145 70.3
Eucgr.J02232 Eucalyptus grandis HOM05D005182 ORTHO05D006631 1.6e-59 233.0 147 68.7
PGSC0003DMG400000477 Solanum tuberosum HOM05D005182 ORTHO05D006631 2.1e-59 232.6 144 71.5
CARHR040200 Cardamine hirsuta HOM05D005182 ORTHO05D006631 2.8e-59 232.3 146 69.2
Carub.0001s3930 Capsella rubella HOM05D005182 ORTHO05D006631 3.7e-59 231.9 146 69.2
FvH4_3g28470 Fragaria vesca HOM05D005182 ORTHO05D006631 3.7e-59 231.9 145 71.0
FAN11G2673 Fragaria x ananassa HOM05D005182 ORTHO05D006631 3.7e-59 231.9 145 71.0
Aa31LG10G4000 Aethionema arabicum HOM05D005182 ORTHO05D006631 1.4e-58 229.9 146 68.5
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 1.4e-58 229.9 142 73.2
AL1G57790 Arabidopsis lyrata HOM05D005182 ORTHO05D006631 1.8e-58 229.6 146 68.5
CDE06G0683 Ceratophyllum demersum HOM05D005182 ORTHO05D006631 1.8e-58 229.6 145 71.0
C03p89510 Brassica napus HOM05D005182 ORTHO05D006631 2.4e-58 229.2 146 68.5
BolC3t21265H Brassica oleracea HOM05D005182 ORTHO05D006631 2.4e-58 229.2 146 68.5
EL10Ac2g02464 Beta vulgaris HOM05D005182 ORTHO05D006631 4.0e-58 228.4 145 70.3
BraA08t32363Z Brassica rapa HOM05D005182 ORTHO05D006631 4.0e-58 228.4 146 67.8
CsaV3_5G027220 Cucumis sativus L. HOM05D005182 ORTHO05D006631 6.9e-58 227.6 143 72.0
MD17G1030300 Malus domestica HOM05D005182 ORTHO05D006631 6.9e-58 227.6 150 70.0
THA.LOC104801894 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 6.9e-58 227.6 146 67.1
Thhalv10011756m.g Eutrema salsugineum HOM05D005182 ORTHO05D006631 9.0e-58 227.3 161 64.6
AUR62032437 Chenopodium quinoa HOM05D005182 ORTHO05D006631 1.2e-57 226.9 161 65.2
AT1G50170 Arabidopsis thaliana HOM05D005182 ORTHO05D006631 1.5e-57 226.5 146 67.8
A08p03300 Brassica napus HOM05D005182 ORTHO05D006631 1.5e-57 226.5 146 67.1
Prupe.3G289500 Prunus persica HOM05D005182 ORTHO05D006631 1.5e-57 226.5 145 69.0
AUR62024784 Chenopodium quinoa HOM05D005182 ORTHO05D006631 2.6e-57 225.7 143 71.3
Sp1g37040 Schrenkiella parvula HOM05D005182 ORTHO05D006631 2.6e-57 225.7 146 67.8
THA.LOC104807109 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 2.6e-57 225.7 146 67.1
MELO3C021568.2 Cucumis melo HOM05D005182 ORTHO05D006631 4.5e-57 224.9 143 70.6
Sed0010591 Sechium edule HOM05D005182 ORTHO05D006631 9.9e-57 223.8 143 70.6
HanXRQChr17g0548351 Helianthus annuus HOM05D005182 ORTHO05D006631 2.9e-56 222.2 141 70.2
Migut.H00088 Erythranthe guttata HOM05D005182 ORTHO05D006631 4.2e-55 218.4 143 71.3
Rhsim02G0095200 Rhododendron simsii HOM05D005182 ORTHO05D006631 5.5e-55 218.0 171 59.1
Cfa007386 Carpinus fangiana HOM05D005182 ORTHO05D006631 7.1e-55 217.6 142 67.6
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 3.0e-53 212.2 145 66.2
Oeu057055.1 Olea europaea HOM05D005182 ORTHO05D006631 6.7e-53 211.1 126 73.0
Medtr6g005410 Medicago truncatula HOM05D005182 ORTHO05D006631 8.7e-53 210.7 151 63.6
Os02g0296800 Oryza sativa ssp. japonica HOM05D005182 ORTHO05D006631 8.7e-53 210.7 108 89.8
SMO356G0462 Selaginella moellendorffii HOM05D005182 ORTHO05D006631 1.5e-52 209.9 142 65.5
arahy.Tifrunner.gnm1.ann1.1JMX4I Arachis hypogaea HOM05D005182 ORTHO05D006631 2.5e-52 209.1 146 66.4
CiPaw.03G042000 Carya illinoinensis HOM05D005182 ORTHO05D006631 4.3e-52 208.4 150 65.3
unitig_746.g26550 Utricularia gibba HOM05D005182 ORTHO05D006631 5.6e-52 208.0 126 73.0
GSVIVG01032428001 Vitis vinifera HOM05D005182 ORTHO05D006631 2.4e-50 202.6 124 72.6
arahy.Tifrunner.gnm1.ann1.NIKC7C Arachis hypogaea HOM05D005182 ORTHO05D006631 4.0e-50 201.8 123 72.4
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 5.3e-50 201.4 139 62.6
Hma1.2p1_1291F.1_g273570 Hydrangea macrophylla HOM05D005182 ORTHO05D006631 1.2e-49 200.3 124 71.8
Rhsim09G0149800 Rhododendron simsii HOM05D005182 ORTHO05D006631 5.8e-49 198.0 157 58.0
Sed0025592 Sechium edule HOM05D005182 ORTHO05D006631 5.5e-47 191.4 143 63.6
ClCG00G002150 Citrullus lanatus HOM05D005182 ORTHO05D006631 9.3e-47 190.7 143 63.6
ClCG09G019170 Citrullus lanatus HOM05D005182 ORTHO05D006631 9.3e-47 190.7 143 63.6
Psat1g058400 Pisum sativum HOM05D005182 ORTHO05D006631 4.6e-46 188.3 143 59.4
Dinv33456 Davidia involucrata HOM05D005182 ORTHO05D006631 3.9e-45 185.3 134 65.7
CBR_g4824 Chara braunii HOM05D005182 ORTHO05D006631 5.1e-45 184.9 138 58.7
SEGI_02514 Sequoiadendron giganteum HOM05D005182 ORTHO05D006631 5.1e-45 184.9 116 74.1
RcHm_v2.0_Chr1g0351301 Rosa chinensis HOM05D005182 ORTHO05D006631 7.4e-44 181.0 145 60.0
MSTRG.3153 Avicennia marina HOM05D005182 ORTHO05D006631 1.3e-43 180.3 112 73.2
BcaC01g01215 Brassica carinata HOM05D005182 ORTHO05D006631 4.8e-43 178.3 146 56.2
Mapoly0034s0026 Marchantia polymorpha HOM05D005182 ORTHO05D006631 8.2e-43 177.6 134 61.2
SHI25748 Sapria himalayana HOM05D005182 ORTHO05D006631 1.1e-42 177.2 142 59.9
Psat1g058360 Pisum sativum HOM05D005182 ORTHO05D006631 1.4e-42 176.8 144 54.9
arahy.Tifrunner.gnm1.ann1.0YQ56L Arachis hypogaea HOM05D005182 ORTHO05D006631 1.8e-42 176.4 154 53.9
CSS0002021 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 1.5e-41 173.3 112 72.3
Hund03875 Selenicereus undatus HOM05D005182 ORTHO05D006631 2.2e-40 169.5 125 62.4
QL09p000526 Quercus lobata HOM05D005182 ORTHO05D006631 3.8e-40 168.7 99 73.7
CiPaw.02G035200 Carya illinoinensis HOM05D005182 ORTHO05D006631 1.1e-39 167.2 100 70.0
Sc19g0005880 Simmondsia chinensis HOM05D005182 ORTHO05D006631 2.5e-39 166.0 144 54.2
MCO08G118 Micromonas commoda HOM05D005182 ORTHO05D006631 7.2e-39 164.5 133 57.1
Duzib187G0244 Durio zibethinus HOM05D005182 ORTHO05D006631 1.6e-38 163.3 101 70.3
Cpa.g.sc130.27 Carica papaya HOM05D005182 ORTHO05D006631 4.6e-38 161.8 112 67.9
AagrBONN_evm.TU.Sc2ySwM_228.389 Anthoceros agrestis HOM05D005182 ORTHO05D006631 3.9e-37 158.7 99 66.7
FvH4_6g51400 Fragaria vesca HOM05D005182 ORTHO05D006631 6.7e-37 157.9 123 58.5
FAN14G1378 Fragaria x ananassa HOM05D005182 ORTHO05D006631 6.7e-37 157.9 123 58.5
Cpa.g.sc130.26 Carica papaya HOM05D005182 ORTHO05D006631 1.9e-36 156.4 108 66.7
Ah.12g060430 Amaranthus hybridus HOM05D005182 ORTHO05D006631 2.0e-33 146.4 154 49.4
Cre04.g214100 Chlamydomonas reinhardtii HOM05D005182 ORTHO05D006631 3.3e-28 129.0 120 49.2
MSTRG.15523 Avicennia marina HOM05D005182 ORTHO05D006631 1.7e-27 126.7 81 70.4
arahy.Tifrunner.gnm1.ann1.C5A6Z1 Arachis hypogaea HOM05D005182 ORTHO05D006631 5.3e-26 121.7 118 50.0
Zm00001eb085260 Zea mays HOM05D005182 ORTHO05D006631 1.5e-25 120.2 68 89.7
EL10Ac6g14578 Beta vulgaris HOM05D002842 ORTHO05D003177 1.4e-23 113.6 73 69.9
Prupe.3G289700 Prunus persica HOM05D005182 ORTHO05D006631 1.4e-23 113.6 83 59.0
EL10Ac5g10908 Beta vulgaris HOM05D005182 ORTHO05D006631 3.2e-23 112.5 73 69.9
EL10Ac6g13785 Beta vulgaris HOM05D005182 ORTHO05D006631 9.4e-23 110.9 73 68.5
Glyma.17G203751 Glycine max HOM05D005182 ORTHO05D006631 6.1e-22 108.2 78 59.0
FAN05G5577 Fragaria x ananassa HOM05D005182 ORTHO05D006631 2.3e-21 106.3 83 59.0
Hund04415 Selenicereus undatus HOM05D005182 ORTHO05D006631 3.9e-21 105.5 79 60.8
Cpa.g.sc171.39 Carica papaya HOM05D005182 ORTHO05D006631 8.8e-21 104.4 68 67.6
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 1.4e-18 97.1 94 45.7
Ah.15g100150 Amaranthus hybridus HOM05D008863 ORTHO05D006631 3.5e-17 92.4 63 60.3
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 3.8e-16 89.0 65 60.0
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 3.8e-16 89.0 56 69.6
Cpa.g.c30633.2 Carica papaya HOM05D005182 ORTHO05D006631 1.1e-15 87.4 60 60.0
Prupe.3G207400 Prunus persica HOM05D005182 ORTHO05D006631 1.5e-15 87.0 85 54.1
PRCOL_00005828 Prasinoderma coloniale HOM05D005182 ORTHO05D006631 4.2e-15 85.5 80 46.2
RcHm_v2.0_Chr7g0228061 Rosa chinensis HOM05D005182 ORTHO05D006631 7.2e-15 84.7 81 50.6
Dinv33459 Davidia involucrata HOM05D005182 ORTHO05D006631 5.0e-08 62.0 49 59.2


User provided reference genes

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