Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb071860 Zea mays HOM05D005964 ORTHO05D007242 3.9e-171 604.7 311 100.0
Os04g0600400 Oryza sativa ssp. japonica HOM05D005964 ORTHO05D007242 1.8e-123 446.4 313 75.4
MBI04_g27277_MAGBIO Magnolia biondii HOM05D005964 ORTHO05D007242 1.6e-63 247.3 277 47.3
Migut.E01349 Erythranthe guttata HOM05D005964 ORTHO05D007242 4.7e-60 235.7 283 48.8
Dinv28013 Davidia involucrata HOM05D005964 ORTHO05D007242 3.1e-59 233.0 286 45.8
Potri.001G130900 Populus trichocarpa HOM05D005964 ORTHO05D007242 6.8e-59 231.9 279 46.2
SGA_v2.0_scaffold111G31365 Striga asiatica HOM05D005964 ORTHO05D007242 1.2e-58 231.1 281 46.3
Lj8A334G75 Lonicera japonica HOM05D005964 ORTHO05D007242 2.0e-58 230.3 287 47.4
HanXRQChr13g0412031 Helianthus annuus HOM05D005964 ORTHO05D007242 2.6e-58 229.9 273 47.3
Nitab4.5_0000030g0090 Nicotiana tabacum HOM05D005964 ORTHO05D007242 9.8e-58 228.0 290 46.2
Potri.003G103000 Populus trichocarpa HOM05D005964 ORTHO05D007242 4.9e-57 225.7 279 45.2
CANSAT21G0049 Cannabis sativa HOM05D005964 ORTHO05D007242 1.1e-56 224.6 288 43.4
Eucgr.E01239 Eucalyptus grandis HOM05D005964 ORTHO05D007242 1.1e-56 224.6 300 45.0
Hma1.2p1_0544F.1_g175520 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 1.1e-56 224.6 274 46.7
TAR381G0569 Trochodendron aralioides HOM05D005964 ORTHO05D007242 1.9e-56 223.8 276 42.8
Cc08_g05080 Coffea canephora HOM05D005964 ORTHO05D007242 2.4e-56 223.4 249 49.8
Eucgr.E01230 Eucalyptus grandis HOM05D005964 ORTHO05D007242 2.4e-56 223.4 300 44.7
Ciclev10002048m.g Citrus clementina HOM05D005964 ORTHO05D007242 4.1e-56 222.6 270 42.2
MD06G1015300 Malus domestica HOM05D005964 ORTHO05D007242 4.1e-56 222.6 272 45.6
Aqoxy7G00888 Aquilegia oxysepala HOM05D005964 ORTHO05D007242 5.4e-56 222.2 261 47.1
ECA240G3292 Erigeron canadensis HOM05D005964 ORTHO05D007242 5.4e-56 222.2 274 46.7
Solyc08g075770.3 Solanum lycopersicum HOM05D005964 ORTHO05D007242 5.4e-56 222.2 277 46.2
Actinidia14743 Actinidia chinensis HOM05D005964 ORTHO05D007242 7.0e-56 221.9 284 45.4
MD00G1001800 Malus domestica HOM05D005964 ORTHO05D007242 7.0e-56 221.9 274 46.7
Sopen08g024420 Solanum pennellii HOM05D005964 ORTHO05D007242 7.0e-56 221.9 277 46.2
Peaxi162Scf02295g00024 Petunia axillaris HOM05D005964 ORTHO05D007242 9.2e-56 221.5 274 46.7
Nitab4.5_0002930g0010 Nicotiana tabacum HOM05D005964 ORTHO05D007242 1.6e-55 220.7 280 46.4
Prupe.5G020400 Prunus persica HOM05D005964 ORTHO05D007242 1.6e-55 220.7 281 43.8
CiPaw.11G103200 Carya illinoinensis HOM05D005964 ORTHO05D007242 2.7e-55 219.9 299 42.8
Sc01g0007030 Simmondsia chinensis HOM05D005964 ORTHO05D007242 2.7e-55 219.9 257 45.1
Actinidia18160 Actinidia chinensis HOM05D005964 ORTHO05D007242 6.0e-55 218.8 275 45.8
Glyma.01G149400 Glycine max HOM05D005964 ORTHO05D007242 1.0e-54 218.0 275 45.5
Lsat_1_v5_gn_5_58981 Lactuca sativa HOM05D005964 ORTHO05D007242 1.7e-54 217.2 274 45.3
Atru.chr6.1471 Acer truncatum HOM05D005964 ORTHO05D007242 3.0e-54 216.5 277 44.8
Sed0000446 Sechium edule HOM05D005964 ORTHO05D007242 3.9e-54 216.1 266 44.0
Oeu046805.1 Olea europaea HOM05D005964 ORTHO05D007242 6.6e-54 215.3 274 44.5
Cfa012590 Carpinus fangiana HOM05D005964 ORTHO05D007242 8.6e-54 214.9 309 41.4
RcHm_v2.0_Chr7g0213391 Rosa chinensis HOM05D005964 ORTHO05D007242 8.6e-54 214.9 286 42.0
arahy.Tifrunner.gnm1.ann1.NL6YXC Arachis hypogaea HOM05D005964 ORTHO05D007242 1.1e-53 214.5 283 45.2
arahy.Tifrunner.gnm1.ann1.PBCI2P Arachis hypogaea HOM05D005964 ORTHO05D007242 1.1e-53 214.5 283 45.2
Manes.17G003600 Manihot esculenta HOM05D005964 ORTHO05D007242 1.1e-53 214.5 278 45.0
Glyma.09G213600 Glycine max HOM05D005964 ORTHO05D007242 1.5e-53 214.2 274 44.5
Gohir.A08G150100 Gossypium hirsutum HOM05D005964 ORTHO05D007242 1.9e-53 213.8 276 43.5
FvH4_5g23960 Fragaria vesca HOM05D005964 ORTHO05D007242 2.5e-53 213.4 276 43.8
FAN13G2421 Fragaria x ananassa HOM05D005964 ORTHO05D007242 3.3e-53 213.0 276 44.2
PGR042G2449 Punica granatum HOM05D005964 ORTHO05D007242 3.3e-53 213.0 277 45.5
Gohir.A03G000012 Gossypium hirsutum HOM05D005964 ORTHO05D007242 4.3e-53 212.6 287 41.5
CsaV3_3G001060 Cucumis sativus L. HOM05D005964 ORTHO05D007242 7.3e-53 211.8 275 42.2
Gorai.004G178600 Gossypium raimondii HOM05D005964 ORTHO05D007242 9.5e-53 211.5 276 43.5
MSTRG.1771 Avicennia marina HOM05D005964 ORTHO05D007242 1.2e-52 211.1 276 44.9
EL10Ac5g11971 Beta vulgaris HOM05D005964 ORTHO05D007242 1.2e-52 211.1 276 42.8
MELO3C013795.2 Cucumis melo HOM05D005964 ORTHO05D007242 1.2e-52 211.1 275 42.2
SalBow8G2874 Salvia bowleyana HOM05D005964 ORTHO05D007242 1.2e-52 211.1 180 58.9
Thecc.03G317600 Theobroma cacao HOM05D005964 ORTHO05D007242 2.1e-52 210.3 263 44.1
Duzib205G1143 Durio zibethinus HOM05D005964 ORTHO05D007242 2.8e-52 209.9 276 42.8
FAN18G2518 Fragaria x ananassa HOM05D005964 ORTHO05D007242 2.8e-52 209.9 276 43.5
Lj2g0015502 Lotus japonicus HOM05D005964 ORTHO05D007242 4.7e-52 209.1 275 44.0
Lalb_Chr05g0215451 Lupinus albus HOM05D005964 ORTHO05D007242 6.2e-52 208.8 274 43.8
DCAR_008183 Daucus carota HOM05D005964 ORTHO05D007242 1.1e-51 208.0 293 42.7
VMungo1215G0316 Vigna mungo HOM05D005964 ORTHO05D007242 1.4e-51 207.6 279 42.3
Nn1g02066 Nelumbo nucifera HOM05D005964 ORTHO05D007242 8.9e-51 204.9 178 55.1
BcaNung03076 Brassica carinata HOM05D005964 ORTHO05D007242 1.2e-50 204.5 296 42.6
Sabra03G0070200 Salix brachista HOM05D005964 ORTHO05D007242 1.2e-50 204.5 227 47.6
Dinv22873 Davidia involucrata HOM05D005964 ORTHO05D007242 2.0e-50 203.8 261 44.8
TPR.G17260 Trifolium pratense HOM05D005964 ORTHO05D007242 2.0e-50 203.8 279 43.0
BcaNung04009 Brassica carinata HOM05D005964 ORTHO05D007242 2.6e-50 203.4 288 43.1
Duzib084G0482 Durio zibethinus HOM05D005964 ORTHO05D007242 7.5e-50 201.8 276 42.4
Gohir.D03G177900 Gossypium hirsutum HOM05D005964 ORTHO05D007242 1.3e-49 201.1 296 40.5
Gorai.003G187200 Gossypium raimondii HOM05D005964 ORTHO05D007242 1.3e-49 201.1 296 40.5
BcaC06g30611 Brassica carinata HOM05D005964 ORTHO05D007242 1.7e-49 200.7 281 43.1
THA.LOC104811073 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 2.2e-49 200.3 283 45.2
Psat2g142160 Pisum sativum HOM05D005964 ORTHO05D007242 3.7e-49 199.5 278 40.6
Gohir.D08G171200 Gossypium hirsutum HOM05D005964 ORTHO05D007242 4.9e-49 199.1 230 47.4
GSVIVG01022785001 Vitis vinifera HOM05D005964 ORTHO05D007242 6.4e-49 198.7 231 48.5
Medtr5g026860 Medicago truncatula HOM05D005964 ORTHO05D007242 1.4e-48 197.6 301 40.2
CSS0036776 Camellia sinensis var. sinensis HOM05D005964 ORTHO05D007242 1.9e-48 197.2 225 45.8
CDE12G0810 Ceratophyllum demersum HOM05D005964 ORTHO05D007242 2.4e-48 196.8 263 41.4
Thhalv10025843m.g Eutrema salsugineum HOM05D005964 ORTHO05D007242 3.2e-48 196.4 279 42.7
BcaC09g51437 Brassica carinata HOM05D005964 ORTHO05D007242 5.4e-48 195.7 295 41.0
CARHR226010 Cardamine hirsuta HOM05D005964 ORTHO05D007242 5.4e-48 195.7 304 41.4
BolC7t45529H Brassica oleracea HOM05D005964 ORTHO05D007242 7.1e-48 195.3 309 40.8
Sp7g17840 Schrenkiella parvula HOM05D005964 ORTHO05D007242 9.2e-48 194.9 278 42.4
unitig_899.g14736 Utricularia gibba HOM05D005964 ORTHO05D007242 9.2e-48 194.9 277 42.6
Rhsim07G0138900 Rhododendron simsii HOM05D005964 ORTHO05D007242 6.0e-47 192.2 224 47.8
Hma1.2p1_0544F.1_g175510 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 2.3e-46 190.3 177 53.1
QL12p001050 Quercus lobata HOM05D005964 ORTHO05D007242 1.5e-45 187.6 184 52.7
HPP92_021116 Vanilla planifolia HOM05D005964 ORTHO05D007242 1.5e-45 187.6 190 52.1
AT4G19140 Arabidopsis thaliana HOM05D005964 ORTHO05D007242 1.9e-45 187.2 288 41.7
C01p13130 Brassica napus HOM05D005964 ORTHO05D007242 2.5e-45 186.8 307 39.4
BolC1t01286H Brassica oleracea HOM05D005964 ORTHO05D007242 2.5e-45 186.8 307 39.4
AUR62018605 Chenopodium quinoa HOM05D005964 ORTHO05D007242 2.5e-45 186.8 232 44.4
AUR62007382 Chenopodium quinoa HOM05D005964 ORTHO05D007242 5.6e-45 185.7 215 48.4
HanXRQChr03g0081171 Helianthus annuus HOM05D005964 ORTHO05D007242 7.3e-45 185.3 267 43.1
A01p11100 Brassica napus HOM05D005964 ORTHO05D007242 1.6e-44 184.1 305 39.0
BraA01t01056Z Brassica rapa HOM05D005964 ORTHO05D007242 1.6e-44 184.1 305 39.0
PSO675G7054 Papaver somniferum HOM05D005964 ORTHO05D007242 2.1e-44 183.7 270 38.9
AL7G34950 Arabidopsis lyrata HOM05D005964 ORTHO05D007242 3.6e-44 183.0 288 40.6
MSTRG.13905 Avicennia marina HOM05D005964 ORTHO05D007242 1.4e-43 181.0 186 50.0
PSO717G0069 Papaver somniferum HOM05D005964 ORTHO05D007242 1.4e-43 181.0 204 44.6
TWI12G1028 Tripterygium wilfordii HOM05D005964 ORTHO05D007242 3.1e-43 179.9 258 43.0
Carub.0007s2201 Capsella rubella HOM05D005964 ORTHO05D007242 4.0e-43 179.5 295 38.6
FAN18G4345 Fragaria x ananassa HOM05D005964 ORTHO05D007242 4.0e-43 179.5 177 51.4
BraA03t14264Z Brassica rapa HOM05D005964 ORTHO05D007242 1.2e-42 177.9 327 38.2
ATR0829G145 Amborella trichopoda HOM05D005964 ORTHO05D007242 1.5e-42 177.6 174 50.6
Sabra01G0101200 Salix brachista HOM05D005964 ORTHO05D007242 7.6e-42 175.3 211 45.5
Aa31LG6G1830 Aethionema arabicum HOM05D005964 ORTHO05D007242 3.7e-41 172.9 288 37.2
Phvul.002G128700 Phaseolus vulgaris HOM05D005964 ORTHO05D007242 1.9e-40 170.6 205 45.9
Hund11143 Selenicereus undatus HOM05D005964 ORTHO05D007242 9.2e-40 168.3 372 31.7
THA.LOC104806194 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 9.2e-40 168.3 208 41.8
vmacro14234 Vaccinium macrocarpon HOM05D005964 ORTHO05D007242 8.6e-38 161.8 129 58.1
SEGI_32375 Sequoiadendron giganteum HOM05D005964 ORTHO05D007242 2.5e-37 160.2 189 42.9
C07p50270 Brassica napus HOM05D005964 ORTHO05D007242 1.5e-34 151.0 296 37.2
arahy.Tifrunner.gnm1.ann1.MDU2JP Arachis hypogaea HOM05D005964 ORTHO05D007242 2.6e-34 150.2 268 37.3
A03p51750 Brassica napus HOM05D005964 ORTHO05D007242 2.6e-34 150.2 299 37.8
ClCG10G001030 Citrullus lanatus HOM05D005964 ORTHO05D007242 7.1e-32 142.1 275 33.8
PSO717G0022 Papaver somniferum HOM05D005964 ORTHO05D007242 2.7e-31 140.2 134 50.7
Ah.12g055850 Amaranthus hybridus HOM05D005964 ORTHO05D007242 4.4e-26 122.9 238 34.5
Mapoly0153s0025 Marchantia polymorpha HOM05D005964 ORTHO05D007242 5.8e-26 122.5 207 38.2
PGSC0003DMG400030871 Solanum tuberosum HOM05D005964 ORTHO05D007242 3.2e-24 116.7 178 40.4
Pp3c6_11480 Physcomitrium patens HOM05D005964 ORTHO05D007242 1.8e-19 100.9 290 29.3
Cpa.g.sc90.42 Carica papaya HOM05D005964 ORTHO05D007242 1.4e-16 91.3 81 50.6
AagrBONN_evm.TU.Sc2ySwM_344.1651 Anthoceros agrestis HOM05D005964 ORTHO05D007242 4.6e-15 86.3 151 34.4
Haze_05991 Corylus avellana HOM05D005964 ORTHO05D007242 4.3e-13 79.7 174 36.2
SMO169G0249 Selaginella moellendorffii HOM05D005964 ORTHO05D007242 4.0e-11 73.2 215 28.4
Cpa.g.sc90.41 Carica papaya HOM05D005964 ORTHO05D007242 2.0e-10 70.9 64 56.2
CBR_g24057 Chara braunii HOM05D005964 ORTHO05D007242 1.0e-09 68.6 110 36.4


User provided reference genes

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