Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 1.3e-135 486.5 270 100.0
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 1.9e-97 359.8 264 74.2
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 6.1e-72 275.0 187 74.3
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 1.0e-71 274.2 189 74.1
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 1.4e-71 273.9 187 73.8
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 2.3e-71 273.1 189 73.0
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 8.8e-71 271.2 190 73.2
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 2.0e-70 270.0 183 75.4
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 2.6e-70 269.6 196 68.4
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 3.3e-70 269.2 189 72.0
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 3.3e-70 269.2 186 71.0
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 7.4e-70 268.1 189 72.5
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 7.4e-70 268.1 189 72.5
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 2.2e-69 266.5 189 72.0
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 3.7e-69 265.8 235 58.7
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 6.3e-69 265.0 191 69.1
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 8.2e-69 264.6 184 71.2
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 1.4e-68 263.8 264 56.8
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 1.4e-68 263.8 191 69.6
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 1.8e-68 263.5 202 64.9
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 2.4e-68 263.1 189 68.8
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 2.4e-68 263.1 174 75.9
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 2.4e-68 263.1 190 68.9
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 2.4e-68 263.1 186 72.6
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 2.4e-68 263.1 184 71.7
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 3.1e-68 262.7 186 69.9
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 3.1e-68 262.7 190 69.5
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 4.1e-68 262.3 181 73.5
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 4.1e-68 262.3 184 71.2
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 4.1e-68 262.3 186 69.9
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 4.1e-68 262.3 186 71.0
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 5.3e-68 261.9 186 71.5
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 5.3e-68 261.9 211 63.0
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 9.1e-68 261.2 194 66.0
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 1.2e-67 260.8 184 70.7
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 1.2e-67 260.8 186 68.8
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 2.6e-67 259.6 184 70.7
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 2.6e-67 259.6 184 70.7
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 2.6e-67 259.6 186 68.8
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 3.5e-67 259.2 195 69.7
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 3.5e-67 259.2 184 70.1
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 3.5e-67 259.2 271 56.8
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 3.5e-67 259.2 217 61.3
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 4.5e-67 258.8 186 69.4
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 4.5e-67 258.8 190 67.9
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 4.5e-67 258.8 194 65.5
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 4.5e-67 258.8 190 67.9
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 5.9e-67 258.5 190 68.4
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 7.7e-67 258.1 190 66.3
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 7.7e-67 258.1 189 71.4
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 7.7e-67 258.1 200 65.0
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 1.0e-66 257.7 188 67.0
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 1.0e-66 257.7 181 70.2
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 1.0e-66 257.7 193 66.8
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 1.3e-66 257.3 188 70.2
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 2.9e-66 256.1 192 69.3
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 2.9e-66 256.1 208 63.5
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 2.9e-66 256.1 188 67.0
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 3.8e-66 255.8 188 69.7
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 3.8e-66 255.8 188 69.7
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 5.0e-66 255.4 184 71.7
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 5.0e-66 255.4 191 68.1
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 5.0e-66 255.4 182 67.6
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 6.5e-66 255.0 183 71.0
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 8.5e-66 254.6 192 68.8
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 8.5e-66 254.6 177 74.6
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 8.5e-66 254.6 211 61.1
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 8.5e-66 254.6 280 55.0
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 1.1e-65 254.2 184 71.7
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 1.1e-65 254.2 184 71.7
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 1.1e-65 254.2 186 70.4
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 1.5e-65 253.8 184 71.7
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 1.5e-65 253.8 190 70.5
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 1.5e-65 253.8 184 69.6
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 1.9e-65 253.4 264 56.8
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 1.9e-65 253.4 186 66.1
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 1.9e-65 253.4 186 68.3
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 2.5e-65 253.1 181 73.5
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 2.5e-65 253.1 245 56.3
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 3.2e-65 252.7 177 74.6
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 4.2e-65 252.3 234 59.0
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 4.2e-65 252.3 208 63.5
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 1.2e-64 250.8 184 71.2
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 1.2e-64 250.8 188 64.4
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 1.6e-64 250.4 188 65.4
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 2.7e-64 249.6 180 70.0
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 2.7e-64 249.6 188 70.2
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 2.7e-64 249.6 188 70.2
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 2.7e-64 249.6 188 63.8
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 2.7e-64 249.6 188 63.8
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 3.6e-64 249.2 197 64.5
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 4.7e-64 248.8 181 66.3
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 4.7e-64 248.8 277 55.6
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 6.1e-64 248.4 186 64.0
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 1.0e-63 247.7 196 64.3
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 1.0e-63 247.7 265 53.2
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 1.0e-63 247.7 191 66.0
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 1.4e-63 247.3 181 65.7
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 1.4e-63 247.3 181 66.9
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 1.4e-63 247.3 186 64.5
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 2.3e-63 246.5 200 62.5
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 2.3e-63 246.5 193 63.2
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 4.0e-63 245.7 180 70.0
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 5.2e-63 245.4 190 63.7
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 8.8e-63 244.6 181 64.6
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 1.5e-62 243.8 187 66.3
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 1.5e-62 243.8 173 73.4
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 2.0e-62 243.4 189 66.1
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 7.4e-62 241.5 181 69.1
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 7.4e-62 241.5 183 67.8
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 8.2e-61 238.0 196 61.2
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 3.6e-56 222.6 180 61.7
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 5.4e-52 208.8 181 59.7
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 1.3e-50 204.1 184 57.1
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 1.1e-49 201.1 184 56.0
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 1.9e-49 200.3 182 57.1
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 2.7e-48 196.4 165 57.6
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 2.6e-46 189.9 184 53.3
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 5.7e-46 188.7 142 69.7
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 3.1e-44 183.0 136 68.4
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.2e-43 181.0 136 70.6
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 4.2e-41 172.6 190 51.6
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 2.8e-40 169.9 172 53.5
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 3.6e-40 169.5 139 61.9
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 7.0e-36 155.2 127 65.4
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 4.3e-25 119.4 87 64.4
Zm00001eb003380 Zea mays HOM05D001522 ORTHO05D001547 1.2e-24 117.9 81 81.5
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 5.1e-18 95.9 110 48.2
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 2.5e-17 93.6 95 46.3
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 9.5e-17 91.7 112 46.4
HPP92_022763 Vanilla planifolia HOM05D005356 ORTHO05D006596 1.6e-16 90.9 49 85.7
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 1.5e-14 84.3 183 31.7
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 7.6e-14 82.0 79 51.9
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 1.2e-11 74.7 145 33.8
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 6.2e-08 62.4 117 37.6


User provided reference genes

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