Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb071120 Zea mays HOM05D003958 ORTHO05D004864 1.9e-181 639.0 323 100.0
Os04g0319600 Oryza sativa ssp. japonica HOM05D003958 ORTHO05D004864 2.4e-139 499.2 324 77.8
MBI05_g22036_MAGBIO Magnolia biondii HOM05D003958 ORTHO05D004864 7.7e-122 441.0 325 69.2
QL02p075632 Quercus lobata HOM05D003958 ORTHO05D004864 1.0e-121 440.7 320 68.8
Sopen02g031390 Solanum pennellii HOM05D003958 ORTHO05D004864 2.5e-120 436.0 322 68.3
PGSC0003DMG400000483 Solanum tuberosum HOM05D003958 ORTHO05D004864 9.4e-120 434.1 322 68.3
CAN.G206.10 Capsicum annuum HOM05D003958 ORTHO05D004864 1.6e-119 433.3 322 68.0
Prupe.3G287900 Prunus persica HOM05D003958 ORTHO05D004864 2.7e-119 432.6 320 67.5
Nn7g37719 Nelumbo nucifera HOM05D003958 ORTHO05D004864 3.6e-119 432.2 320 67.5
Peaxi162Scf00129g01325 Petunia axillaris HOM05D003958 ORTHO05D004864 6.1e-119 431.4 321 66.4
ATR0057G029 Amborella trichopoda HOM05D003958 ORTHO05D004864 7.9e-119 431.0 325 68.0
CSS0020788 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 7.9e-119 431.0 321 66.7
CSS0020854 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 7.9e-119 431.0 321 66.7
Duzib147G0566 Durio zibethinus HOM05D003958 ORTHO05D004864 5.1e-118 428.3 323 67.2
Hund02774 Selenicereus undatus HOM05D003958 ORTHO05D004864 5.1e-118 428.3 322 66.8
Atru.chr6.2341 Acer truncatum HOM05D003958 ORTHO05D004864 6.7e-118 427.9 320 66.9
Duzib147G0897 Durio zibethinus HOM05D003958 ORTHO05D004864 6.7e-118 427.9 322 67.4
CDE06G0036 Ceratophyllum demersum HOM05D003958 ORTHO05D004864 8.8e-118 427.6 324 67.3
DCAR_009028 Daucus carota HOM05D003958 ORTHO05D004864 8.8e-118 427.6 321 66.7
Nitab4.5_0008215g0010 Nicotiana tabacum HOM05D003958 ORTHO05D004864 1.1e-117 427.2 321 66.0
CANSAT64G0951 Cannabis sativa HOM05D003958 ORTHO05D004864 1.5e-117 426.8 324 67.0
Nitab4.5_0002739g0040 Nicotiana tabacum HOM05D003958 ORTHO05D004864 2.0e-117 426.4 321 66.0
EL10Ac9g21169 Beta vulgaris HOM05D003958 ORTHO05D004864 2.6e-117 426.0 320 67.5
CiPaw.04G026700 Carya illinoinensis HOM05D003958 ORTHO05D004864 2.6e-117 426.0 319 66.1
arahy.Tifrunner.gnm1.ann1.CB8F3G Arachis hypogaea HOM05D003958 ORTHO05D004864 4.4e-117 425.2 322 66.1
RcHm_v2.0_Chr2g0172551 Rosa chinensis HOM05D003958 ORTHO05D004864 5.7e-117 424.9 321 67.3
Cc02_g12190 Coffea canephora HOM05D003958 ORTHO05D004864 7.4e-117 424.5 323 66.9
Thecc.04G013700 Theobroma cacao HOM05D003958 ORTHO05D004864 7.4e-117 424.5 320 66.9
arahy.Tifrunner.gnm1.ann1.38SPRB Arachis hypogaea HOM05D003958 ORTHO05D004864 9.7e-117 424.1 321 66.0
Duzib147G0735 Durio zibethinus HOM05D003958 ORTHO05D004864 9.7e-117 424.1 320 66.9
Haze_14701 Corylus avellana HOM05D003958 ORTHO05D004864 1.7e-116 423.3 319 66.1
Ca_00369_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 2.2e-116 422.9 321 66.0
Phvul.011G172200 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 3.7e-116 422.2 320 66.9
COL.COLO4_29053 Corchorus olitorius HOM05D003958 ORTHO05D004864 4.8e-116 421.8 320 67.2
FvH4_6g51011 Fragaria vesca HOM05D003958 ORTHO05D004864 4.8e-116 421.8 320 66.6
Manes.17G113700 Manihot esculenta HOM05D003958 ORTHO05D004864 8.2e-116 421.0 322 66.1
Lj7A595G65 Lonicera japonica HOM05D003958 ORTHO05D004864 1.4e-115 420.2 322 65.5
Lj2g0025561 Lotus japonicus HOM05D003958 ORTHO05D004864 1.4e-115 420.2 320 65.9
CiPaw.03G040700 Carya illinoinensis HOM05D003958 ORTHO05D004864 1.8e-115 419.9 319 65.8
Lalb_Chr03g0031671 Lupinus albus HOM05D003958 ORTHO05D004864 2.4e-115 419.5 320 65.9
Glyma.15G078000 Glycine max HOM05D003958 ORTHO05D004864 4.1e-115 418.7 319 66.1
Sed0009763 Sechium edule HOM05D003958 ORTHO05D004864 4.1e-115 418.7 320 67.2
TWI12G0059 Tripterygium wilfordii HOM05D003958 ORTHO05D004864 5.3e-115 418.3 320 66.9
VMungo0540G0822 Vigna mungo HOM05D003958 ORTHO05D004864 5.3e-115 418.3 320 65.0
Phvul.006G181700 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 6.9e-115 417.9 323 65.0
Aqoxy3G00906 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 9.1e-115 417.5 322 65.8
Gohir.D09G027100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 9.1e-115 417.5 322 65.2
Glyma.13G234900 Glycine max HOM05D003958 ORTHO05D004864 1.2e-114 417.2 321 66.0
Gorai.006G031600 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.2e-114 417.2 322 65.2
Eucgr.I01766 Eucalyptus grandis HOM05D003958 ORTHO05D004864 2.0e-114 416.4 319 66.1
PSO832G3613 Papaver somniferum HOM05D003958 ORTHO05D004864 2.6e-114 416.0 326 66.6
PSO063G1059 Papaver somniferum HOM05D003958 ORTHO05D004864 5.9e-114 414.8 326 66.3
Psat1g092800 Pisum sativum HOM05D003958 ORTHO05D004864 7.7e-114 414.5 321 66.4
TAR622G1043 Trochodendron aralioides HOM05D003958 ORTHO05D004864 7.7e-114 414.5 320 65.3
MSTRG.3157 Avicennia marina HOM05D003958 ORTHO05D004864 1.0e-113 414.1 319 66.8
ClCG01G008920 Citrullus lanatus HOM05D003958 ORTHO05D004864 1.0e-113 414.1 320 65.9
TPR.G11724 Trifolium pratense HOM05D003958 ORTHO05D004864 1.0e-113 414.1 320 65.0
Gohir.A09G027800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.3e-113 413.7 325 64.3
Medtr6g047800 Medicago truncatula HOM05D003958 ORTHO05D004864 1.3e-113 413.7 321 65.4
Ca_00876_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 1.7e-113 413.3 320 65.9
Lj3g0001252 Lotus japonicus HOM05D003958 ORTHO05D004864 1.7e-113 413.3 320 65.6
AUR62002487 Chenopodium quinoa HOM05D003958 ORTHO05D004864 2.9e-113 412.5 345 62.9
CsaV3_1G037790 Cucumis sativus L. HOM05D003958 ORTHO05D004864 2.9e-113 412.5 320 65.6
vmacro18265 Vaccinium macrocarpon HOM05D003958 ORTHO05D004864 2.9e-113 412.5 338 62.4
ECA232G3491 Erigeron canadensis HOM05D003958 ORTHO05D004864 5.0e-113 411.8 325 66.2
MELO3C021808.2 Cucumis melo HOM05D003958 ORTHO05D004864 6.5e-113 411.4 320 65.6
PGR054G0003 Punica granatum HOM05D003958 ORTHO05D004864 8.5e-113 411.0 321 63.6
TPR.G33516 Trifolium pratense HOM05D003958 ORTHO05D004864 1.1e-112 410.6 319 66.8
Aqoxy2G00425 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 1.4e-112 410.2 321 65.4
Cpa.g.sc108.31 Carica papaya HOM05D003958 ORTHO05D004864 1.4e-112 410.2 320 65.6
AUR62023705 Chenopodium quinoa HOM05D003958 ORTHO05D004864 1.4e-112 410.2 313 66.5
Ciclev10016011m.g Citrus clementina HOM05D003958 ORTHO05D004864 1.9e-112 409.8 321 64.2
Gohir.D13G007800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.9e-112 409.8 322 64.9
Lju41A38T12 Lonicera japonica HOM05D003958 ORTHO05D004864 1.9e-112 409.8 326 64.7
Psat1g202680 Pisum sativum HOM05D003958 ORTHO05D004864 1.9e-112 409.8 320 65.0
PGR119G1149 Punica granatum HOM05D003958 ORTHO05D004864 2.5e-112 409.5 321 63.6
THA.LOC104821089 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 2.5e-112 409.5 323 64.4
Sc03g0007660 Simmondsia chinensis HOM05D003958 ORTHO05D004864 7.2e-112 407.9 320 64.7
Aa31LG11G15350 Aethionema arabicum HOM05D003958 ORTHO05D004864 1.6e-111 406.8 330 63.9
AT5G14600 Arabidopsis thaliana HOM05D003958 ORTHO05D004864 2.7e-111 406.0 327 63.3
Oeu057051.1 Olea europaea HOM05D003958 ORTHO05D004864 1.8e-110 403.3 321 64.5
Sabra18G0100500 Salix brachista HOM05D003958 ORTHO05D004864 1.8e-110 403.3 305 66.6
Carub.0006s1277 Capsella rubella HOM05D003958 ORTHO05D004864 2.3e-110 402.9 329 62.9
Migut.H00096 Erythranthe guttata HOM05D003958 ORTHO05D004864 2.3e-110 402.9 319 64.6
HanXRQChr09g0255001 Helianthus annuus HOM05D003958 ORTHO05D004864 2.3e-110 402.9 324 65.1
Sabra18G0098500 Salix brachista HOM05D003958 ORTHO05D004864 3.9e-110 402.1 305 66.9
THA.LOC104802398 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 3.9e-110 402.1 325 63.4
Lsat_1_v5_gn_4_183181 Lactuca sativa HOM05D003958 ORTHO05D004864 5.2e-110 401.7 325 64.0
Sabra18G0099100 Salix brachista HOM05D003958 ORTHO05D004864 6.7e-110 401.4 320 64.4
Potri.018G120500 Populus trichocarpa HOM05D003958 ORTHO05D004864 8.8e-110 401.0 320 64.1
CARHR198720 Cardamine hirsuta HOM05D003958 ORTHO05D004864 2.0e-109 399.8 327 63.3
AL6G25360 Arabidopsis lyrata HOM05D003958 ORTHO05D004864 3.3e-109 399.1 327 62.7
Thhalv10014133m.g Eutrema salsugineum HOM05D003958 ORTHO05D004864 3.3e-109 399.1 327 62.4
MD09G1029500 Malus domestica HOM05D003958 ORTHO05D004864 3.3e-109 399.1 290 69.7
C09p62510 Brassica napus HOM05D003958 ORTHO05D004864 4.4e-109 398.7 331 61.6
SEGI_01237 Sequoiadendron giganteum HOM05D003958 ORTHO05D004864 7.4e-109 397.9 339 60.8
Sp6g29430 Schrenkiella parvula HOM05D003958 ORTHO05D004864 9.7e-109 397.5 327 61.8
A10p24040 Brassica napus HOM05D003958 ORTHO05D004864 2.2e-108 396.4 329 61.1
BraA10t44467Z Brassica rapa HOM05D003958 ORTHO05D004864 4.8e-108 395.2 329 61.1
BolC9t59091H Brassica oleracea HOM05D003958 ORTHO05D004864 5.3e-107 391.7 338 60.1
Cfa007405 Carpinus fangiana HOM05D003958 ORTHO05D004864 1.6e-106 390.2 270 71.5
FAN14G0618 Fragaria x ananassa HOM05D003958 ORTHO05D004864 3.8e-105 385.6 278 69.4
SGA_v2.0_scaffold196G40937 Striga asiatica HOM05D003958 ORTHO05D004864 5.0e-105 385.2 321 62.6
FAN09G1134 Fragaria x ananassa HOM05D003958 ORTHO05D004864 8.5e-105 384.4 281 69.0
BcaNung03113 Brassica carinata HOM05D003958 ORTHO05D004864 2.7e-103 379.4 327 59.3
Sabra18G0101000 Salix brachista HOM05D003958 ORTHO05D004864 2.7e-103 379.4 290 66.2
Hma1.2p1_0858F.1_g229230 Hydrangea macrophylla HOM05D003958 ORTHO05D004864 8.8e-102 374.4 343 58.6
AagrBONN_evm.TU.Sc2ySwM_344.690 Anthoceros agrestis HOM05D003958 ORTHO05D004864 3.7e-100 369.0 323 61.0
BcaC03g13470 Brassica carinata HOM05D003958 ORTHO05D004864 1.7e-97 360.1 319 58.6
SMO361G0823 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 2.2e-97 359.8 321 60.4
SMO361G0280 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 3.8e-97 359.0 317 61.2
Pp3c18_5220 Physcomitrium patens HOM05D003958 ORTHO05D004864 6.5e-97 358.2 345 56.8
Sabra18G0098900 Salix brachista HOM05D003958 ORTHO05D004864 7.2e-96 354.8 270 65.9
HPP92_013732 Vanilla planifolia HOM05D003958 ORTHO05D004864 1.2e-95 354.0 240 68.3
MD17G1031500 Malus domestica HOM05D003958 ORTHO05D004864 3.0e-94 349.4 230 76.1
arahy.Tifrunner.gnm1.ann1.8Z0BSJ Arachis hypogaea HOM05D003958 ORTHO05D004864 2.6e-93 346.3 320 56.9
Mapoly0053s0094 Marchantia polymorpha HOM05D003958 ORTHO05D004864 2.6e-93 346.3 367 51.5
Gorai.013G008200 Gossypium raimondii HOM05D003958 ORTHO05D004864 7.0e-91 338.2 322 55.9
CSS0027303 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 3.6e-87 325.9 320 55.0
Medtr2g014590 Medicago truncatula HOM05D003958 ORTHO05D004864 5.2e-86 322.0 245 64.9
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 6.8e-86 321.6 258 63.6
Dinv35088 Davidia involucrata HOM05D003958 ORTHO05D004864 3.5e-82 309.3 320 53.4
arahy.Tifrunner.gnm1.ann1.Z5MU8N Arachis hypogaea HOM05D003958 ORTHO05D004864 1.1e-75 287.7 217 67.7
arahy.Tifrunner.gnm1.ann1.M5ZQAR Arachis hypogaea HOM05D003958 ORTHO05D004864 2.3e-73 280.0 235 63.0
unitig_62.g23558 Utricularia gibba HOM05D003958 ORTHO05D004864 1.1e-72 277.7 206 67.5
Cre05.g244236 Chlamydomonas reinhardtii HOM05D003958 ORTHO05D004864 8.0e-71 271.6 249 56.6
MCO10G191 Micromonas commoda HOM05D003958 ORTHO05D004864 1.2e-69 267.7 333 47.4
SGA_v2.0_scaffold34G13865 Striga asiatica HOM05D003958 ORTHO05D004864 4.1e-67 259.2 339 45.7
Atru.chr6.2249 Acer truncatum HOM05D003958 ORTHO05D004864 1.6e-63 247.3 175 70.3
GSVIVG01032441001 Vitis vinifera HOM05D000462 ORTHO05D002607 2.1e-63 246.9 158 75.3
PRCOL_00006622 Prasinoderma coloniale HOM05D003958 ORTHO05D004864 4.7e-63 245.7 243 52.3
arahy.Tifrunner.gnm1.ann1.FV4QAS Arachis hypogaea HOM05D003958 ORTHO05D004864 5.4e-59 232.3 184 67.4
Ah.07g203270 Amaranthus hybridus HOM05D003958 ORTHO05D004864 2.1e-58 230.3 163 71.2
Eucgr.L02705 Eucalyptus grandis HOM05D003958 ORTHO05D004864 3.2e-51 206.5 168 61.3
Ah.07g203280 Amaranthus hybridus HOM05D003958 ORTHO05D004864 1.6e-50 204.1 161 62.7
Haze_26162 Corylus avellana HOM05D003958 ORTHO05D004864 2.1e-47 193.7 301 38.2
Gohir.A10G243400 Gossypium hirsutum HOM05D003958 ORTHO05D004864 6.9e-46 188.7 141 67.4
BcaC01g04875 Brassica carinata HOM05D003958 ORTHO05D004864 9.6e-40 168.3 233 44.2
Sopen06g018800 Solanum pennellii HOM05D003958 ORTHO05D004864 3.6e-39 166.4 147 59.9
Gohir.A03G000004 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.4e-38 163.7 125 67.2
Gohir.A01G232100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 6.9e-38 162.2 134 61.2
Gohir.D11G349300 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.7e-36 157.5 131 60.3
Gorai.004G293900 Gossypium raimondii HOM05D003958 ORTHO05D004864 2.2e-36 157.1 131 60.3
Gorai.006G274500 Gossypium raimondii HOM05D003958 ORTHO05D004864 2.2e-36 157.1 131 60.3
Gorai.007G380200 Gossypium raimondii HOM05D003958 ORTHO05D004864 2.2e-36 157.1 129 61.2
FAN14G4368 Fragaria x ananassa HOM05D000001 ORTHO05D000003 4.9e-36 156.0 171 49.7
Gohir.D01G222101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 6.4e-36 155.6 131 61.1
Gohir.D09G250100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 6.4e-36 155.6 131 60.3
Gohir.D08G275428 Gossypium hirsutum HOM05D003958 ORTHO05D004864 8.4e-36 155.2 131 59.5
Gorai.N017600 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.2e-35 153.3 128 60.2
Gohir.D03G178200 Gossypium hirsutum HOM05D003958 ORTHO05D004864 9.3e-35 151.8 131 58.0
Gohir.A06G000101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 6.0e-34 149.1 88 83.0
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.6e-32 142.5 295 35.6
Gohir.1Z049515 Gossypium hirsutum HOM05D003958 ORTHO05D015143 6.4e-28 129.0 115 56.5
Gorai.006G275300 Gossypium raimondii HOM05D003958 ORTHO05D015143 8.4e-28 128.6 115 56.5
Atru.chr6.2248 Acer truncatum HOM05D003958 ORTHO05D004864 1.3e-25 121.3 94 63.8
FAN05G2568 Fragaria x ananassa HOM05D003958 ORTHO05D004864 1.8e-25 120.9 134 50.7
C03p32750 Brassica napus HOM05D003958 ORTHO05D004864 2.8e-23 113.6 95 57.9
BolC3t15610H Brassica oleracea HOM05D003958 ORTHO05D004864 2.8e-23 113.6 95 57.9
Gorai.001G000100 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.3e-20 104.8 97 54.6
Gohir.A09G249500 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.2e-20 104.0 64 79.7
Gohir.1Z049410 Gossypium hirsutum HOM05D003958 ORTHO05D004864 9.3e-19 98.6 64 76.6
CSS0019434 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 3.5e-18 96.7 74 70.3
Gohir.D08G275100 Gossypium hirsutum HOM05D003958 ORTHO05D005872 2.4e-14 84.0 49 73.5
Gorai.N025700 Gossypium raimondii HOM05D003958 ORTHO05D005872 2.4e-14 84.0 49 73.5
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 4.1e-14 83.2 47 72.3
Gohir.1Z049564 Gossypium hirsutum HOM05D003958 ORTHO05D004864 6.9e-14 82.4 49 71.4
Gohir.1Z049570 Gossypium hirsutum HOM05D003958 ORTHO05D005872 6.9e-14 82.4 49 71.4
Gorai.007G000600 Gossypium raimondii HOM05D001392 ORTHO05D014312 1.2e-13 81.6 72 55.6
FAN05G2311 Fragaria x ananassa HOM05D003958 ORTHO05D004864 4.5e-13 79.7 107 47.7
Gohir.D11G176600 Gossypium hirsutum HOM05D003958 ORTHO05D004864 4.5e-13 79.7 83 50.6
Gohir.D07G000766 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.9e-13 79.3 83 51.8
Gorai.013G272500 Gossypium raimondii HOM05D003958 ORTHO05D004864 5.0e-12 76.3 72 54.2
Solyc06g053690.3 Solanum lycopersicum HOM05D003958 ORTHO05D004864 6.5e-12 75.9 63 52.4
Nitab4.5_0001556g0020 Nicotiana tabacum HOM05D003958 ORTHO05D004864 3.0e-09 67.0 76 46.1
Oeu056467.1 Olea europaea HOM05D003958 ORTHO05D004864 1.1e-08 65.1 61 49.2


User provided reference genes

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