Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb070800 Zea mays HOM05D038139 ORTHO05D016109 9.7e-141 503.4 250 100.0
Zm00001eb054640 Zea mays HOM05D038139 ORTHO05D016109 8.8e-33 144.8 129 64.3
Zm00001eb007120 Zea mays HOM05D038139 ORTHO05D016109 8.5e-28 128.3 125 60.8
Zm00001eb059620 Zea mays HOM05D002312 ORTHO05D007981 1.5e-11 74.3 140 37.9
THA.LOC104810259 Tarenaya hassleriana HOM05D002312 ORTHO05D007981 4.2e-11 72.8 140 36.4
Solyc07g066430.3 Solanum lycopersicum HOM05D002312 ORTHO05D007981 5.5e-11 72.4 152 36.2
Sopen07g034600 Solanum pennellii HOM05D002312 ORTHO05D007981 5.5e-11 72.4 152 36.2
PGSC0003DMG402022236 Solanum tuberosum HOM05D002312 ORTHO05D007981 5.5e-11 72.4 152 36.2
AUR62040884 Chenopodium quinoa HOM05D002312 ORTHO05D007981 7.2e-11 72.0 185 31.9
Duzib187G0190 Durio zibethinus HOM05D002312 ORTHO05D007981 9.5e-11 71.6 140 35.7
Thecc.07G153200 Theobroma cacao HOM05D002312 ORTHO05D007981 9.5e-11 71.6 140 35.7
MSTRG.13062 Avicennia marina HOM05D002312 ORTHO05D007981 1.2e-10 71.2 140 35.0
EL10Ac1g00206 Beta vulgaris HOM05D002312 ORTHO05D007981 1.2e-10 71.2 140 35.0
Ciclev10020166m.g Citrus clementina HOM05D002312 ORTHO05D007981 1.2e-10 71.2 140 35.0
Migut.H01695 Erythranthe guttata HOM05D002312 ORTHO05D007981 1.2e-10 71.2 140 35.0
Gohir.A04G050966 Gossypium hirsutum HOM05D002312 ORTHO05D007981 1.2e-10 71.2 140 35.0
Gohir.D05G330100 Gossypium hirsutum HOM05D002312 ORTHO05D007981 1.2e-10 71.2 140 35.0
Gorai.009G353700 Gossypium raimondii HOM05D002312 ORTHO05D007981 1.2e-10 71.2 140 35.0
Peaxi162Scf00452g00847 Petunia axillaris HOM05D002312 ORTHO05D007981 1.2e-10 71.2 149 33.6
Hund01729 Selenicereus undatus HOM05D002312 ORTHO05D007981 1.2e-10 71.2 170 32.9
Manes.06G171400 Manihot esculenta HOM05D002312 ORTHO05D007981 1.6e-10 70.9 140 35.7
arahy.Tifrunner.gnm1.ann1.9G4NA9 Arachis hypogaea HOM05D002312 ORTHO05D007981 2.1e-10 70.5 140 35.0
Cfa019434 Carpinus fangiana HOM05D002312 ORTHO05D007981 2.1e-10 70.5 140 35.0
Dinv42513 Davidia involucrata HOM05D002312 ORTHO05D007981 2.1e-10 70.5 140 35.0
FvH4_3g15830 Fragaria vesca HOM05D002312 ORTHO05D007981 2.1e-10 70.5 142 34.5
FAN11G0457 Fragaria x ananassa HOM05D002312 ORTHO05D007981 2.1e-10 70.5 142 34.5
FAN16G1092 Fragaria x ananassa HOM05D002312 ORTHO05D007981 2.1e-10 70.5 142 34.5
FAN21G2661 Fragaria x ananassa HOM05D002312 ORTHO05D007981 2.1e-10 70.5 142 34.5
Glyma.08G236400 Glycine max HOM05D002312 ORTHO05D007981 2.1e-10 70.5 140 35.0
Nn7g37796 Nelumbo nucifera HOM05D002312 ORTHO05D007981 2.1e-10 70.5 140 35.0
PSO675G8809 Papaver somniferum HOM05D002312 ORTHO05D007981 2.1e-10 70.5 201 28.9
RcHm_v2.0_Chr5g0026631 Rosa chinensis HOM05D002312 ORTHO05D007981 2.1e-10 70.5 142 34.5
ClCG11G016400 Citrullus lanatus HOM05D002312 ORTHO05D007981 2.8e-10 70.1 140 34.3
CsaV3_4G031850 Cucumis sativus L. HOM05D002312 ORTHO05D007981 2.8e-10 70.1 140 34.3
Nitab4.5_0001749g0040 Nicotiana tabacum HOM05D002312 ORTHO05D007981 2.8e-10 70.1 152 34.2
Nitab4.5_0009317g0020 Nicotiana tabacum HOM05D002312 ORTHO05D007981 2.8e-10 70.1 152 34.2
Atru.chr12.2173 Acer truncatum HOM05D002312 ORTHO05D007981 3.6e-10 69.7 140 35.0
Actinidia07349 Actinidia chinensis HOM05D002312 ORTHO05D007981 3.6e-10 69.7 152 33.6
CAN.G943.35 Capsicum annuum HOM05D002312 ORTHO05D007981 3.6e-10 69.7 140 35.0
DCAR_013741 Daucus carota HOM05D002312 ORTHO05D007981 3.6e-10 69.7 166 32.5
PSO541G3034 Papaver somniferum HOM05D002312 ORTHO05D007981 3.6e-10 69.7 201 28.4
CiPaw.12G006300 Carya illinoinensis HOM05D002312 ORTHO05D007981 4.7e-10 69.3 140 35.0
Hma1.2p1_0637F.1_g193560 Hydrangea macrophylla HOM05D002312 ORTHO05D007981 4.7e-10 69.3 140 35.0
Prupe.4G140300 Prunus persica HOM05D002312 ORTHO05D007981 4.7e-10 69.3 140 34.3
Sed0019011 Sechium edule HOM05D002312 ORTHO05D007981 4.7e-10 69.3 140 34.3
Aqoxy1G01461 Aquilegia oxysepala HOM05D002312 ORTHO05D007981 6.1e-10 68.9 140 34.3
HanXRQChr03g0078111 Helianthus annuus HOM05D002312 ORTHO05D007981 6.1e-10 68.9 140 35.0
Psat4g169960 Pisum sativum HOM05D002312 ORTHO05D007981 6.1e-10 68.9 140 33.6
unitig_744.g24502 Utricularia gibba HOM05D002312 ORTHO05D007981 6.1e-10 68.9 140 34.3
HPP92_015923 Vanilla planifolia HOM05D002312 ORTHO05D007981 6.1e-10 68.9 140 34.3
BcaC08g44232 Brassica carinata HOM05D002312 ORTHO05D007981 8.0e-10 68.6 140 34.3
A05p17160 Brassica napus HOM05D002312 ORTHO05D007981 8.0e-10 68.6 140 34.3
C06p16370 Brassica napus HOM05D002312 ORTHO05D007981 8.0e-10 68.6 140 34.3
BolC6t36838H Brassica oleracea HOM05D002312 ORTHO05D007981 8.0e-10 68.6 140 34.3
BraA05t20618Z Brassica rapa HOM05D002312 ORTHO05D007981 8.0e-10 68.6 140 34.3
Eucgr.F03180 Eucalyptus grandis HOM05D002312 ORTHO05D007981 8.0e-10 68.6 195 31.8
MBI02_g07511_MAGBIO Magnolia biondii HOM05D002312 ORTHO05D007981 8.0e-10 68.6 144 33.3
Phvul.011G174800 Phaseolus vulgaris HOM05D002312 ORTHO05D007981 8.0e-10 68.6 140 34.3
Potri.001G457900 Populus trichocarpa HOM05D002312 ORTHO05D007981 8.0e-10 68.6 140 34.3
Sabra16G0310400 Salix brachista HOM05D002312 ORTHO05D007981 8.0e-10 68.6 140 34.3
TWI38G0315 Tripterygium wilfordii HOM05D002312 ORTHO05D007981 8.0e-10 68.6 140 34.3
Aa31sc167G70 Aethionema arabicum HOM05D002312 ORTHO05D007981 1.0e-09 68.2 140 33.6
AL1G64300 Arabidopsis lyrata HOM05D002312 ORTHO05D007981 1.0e-09 68.2 140 33.6
AT1G56050 Arabidopsis thaliana HOM05D002312 ORTHO05D007981 1.0e-09 68.2 140 33.6
BcaB02g10786 Brassica carinata HOM05D002312 ORTHO05D007981 1.0e-09 68.2 140 33.6
Carub.0001s4464 Capsella rubella HOM05D002312 ORTHO05D007981 1.0e-09 68.2 140 33.6
CDE01G0809 Ceratophyllum demersum HOM05D002312 ORTHO05D007981 1.0e-09 68.2 35 85.7
Thhalv10011519m.g Eutrema salsugineum HOM05D002312 ORTHO05D007981 1.0e-09 68.2 140 33.6
Lj3g0013391 Lotus japonicus HOM05D002312 ORTHO05D007981 1.0e-09 68.2 140 33.6
SGA_v2.0_scaffold713G53502 Striga asiatica HOM05D002312 ORTHO05D007981 1.0e-09 68.2 173 32.9
ATR0763G215 Amborella trichopoda HOM05D002312 ORTHO05D007981 1.4e-09 67.8 140 35.0
CSS0000547 Camellia sinensis var. sinensis HOM05D002312 ORTHO05D007981 1.4e-09 67.8 90 44.4
CSS0003431 Camellia sinensis var. sinensis HOM05D002312 ORTHO05D007981 1.4e-09 67.8 90 44.4
CANSAT80G0083 Cannabis sativa HOM05D002312 ORTHO05D007981 1.4e-09 67.8 140 32.9
MELO3C010569.2 Cucumis melo HOM05D002312 ORTHO05D007981 1.4e-09 67.8 140 33.6
Lalb_Chr01g0007181 Lupinus albus HOM05D002312 ORTHO05D007981 1.4e-09 67.8 140 32.9
PGR031G3731 Punica granatum HOM05D002312 ORTHO05D007981 1.4e-09 67.8 35 88.6
Zm00001eb112470 Zea mays HOM05D002312 ORTHO05D444348 1.4e-09 67.8 35 88.6
Cpa.g.sc10.42 Carica papaya HOM05D002312 ORTHO05D007981 1.8e-09 67.4 35 85.7
Ca_27307_v3 Cicer arietinum L. HOM05D002312 ORTHO05D007981 1.8e-09 67.4 140 32.9
Lj1C905T5 Lonicera japonica HOM05D002312 ORTHO05D007981 1.8e-09 67.4 35 85.7
MD10G1202000 Malus domestica HOM05D002312 ORTHO05D007981 1.8e-09 67.4 140 33.6
Oeu051662.1 Olea europaea HOM05D002312 ORTHO05D007981 1.8e-09 67.4 35 85.7
Rhsim06G0238600 Rhododendron simsii HOM05D002312 ORTHO05D007981 1.8e-09 67.4 140 32.9
VMungo1127G0526 Vigna mungo HOM05D002312 ORTHO05D007981 1.8e-09 67.4 35 85.7
GSVIVG01020436001 Vitis vinifera HOM05D002312 ORTHO05D007981 1.8e-09 67.4 35 85.7
Cc05_g16040 Coffea canephora HOM05D002312 ORTHO05D007981 2.3e-09 67.0 140 32.1
Sc20g0002970 Simmondsia chinensis HOM05D002312 ORTHO05D007981 2.3e-09 67.0 35 82.9
Lsat_1_v5_gn_9_45640 Lactuca sativa HOM05D002312 ORTHO05D007981 3.0e-09 66.6 140 34.3
arahy.Tifrunner.gnm1.ann1.PK5V4W Arachis hypogaea HOM05D002312 ORTHO05D007981 4.0e-09 66.2 35 82.9
Sp1g41660 Schrenkiella parvula HOM05D002312 ORTHO05D007981 4.0e-09 66.2 140 32.9
TPR.G9402 Trifolium pratense HOM05D002312 ORTHO05D007981 4.0e-09 66.2 140 32.1
TAR626G1371 Trochodendron aralioides HOM05D002312 ORTHO05D007981 5.2e-09 65.9 140 32.9
QL04p073898 Quercus lobata HOM05D002312 ORTHO05D007981 6.8e-09 65.5 37 81.1
Mapoly0084s0078 Marchantia polymorpha HOM05D002312 ORTHO05D007981 8.8e-09 65.1 140 32.1
vmacro11661 Vaccinium macrocarpon HOM05D002312 ORTHO05D007981 1.2e-08 64.7 35 80.0
AagrBONN_evm.TU.Sc2ySwM_117.2664 Anthoceros agrestis HOM05D002312 ORTHO05D007981 1.5e-08 64.3 140 32.1
CARHR045770 Cardamine hirsuta HOM05D002312 ORTHO05D007981 1.5e-08 64.3 140 32.1
ECA240G2934 Erigeron canadensis HOM05D002312 ORTHO05D007981 1.5e-08 64.3 140 32.9
SMO367G0264 Selaginella moellendorffii HOM05D002312 ORTHO05D007981 2.6e-08 63.5 140 31.4
Pp3c6_25660 Physcomitrium patens HOM05D002312 ORTHO05D007981 3.4e-08 63.2 35 77.1
CBR_g41138 Chara braunii HOM05D002312 ORTHO05D007981 5.7e-08 62.4 35 74.3
MD05G1219600 Malus domestica HOM05D002312 ORTHO05D007981 5.7e-08 62.4 35 77.1
BcaC05g25914 Brassica carinata HOM05D002312 ORTHO05D016109 1.3e-07 61.2 52 57.7
A02p22540 Brassica napus HOM05D002312 ORTHO05D016109 4.9e-07 59.3 44 63.6
BraA02t07257Z Brassica rapa HOM05D002312 ORTHO05D016109 4.9e-07 59.3 44 63.6
Cre13.g562150 Chlamydomonas reinhardtii HOM05D002312 ORTHO05D007981 6.3e-07 58.9 35 77.1
C05p18650 Brassica napus HOM05D002312 ORTHO05D016109 3.1e-06 56.6 35 71.4
MCO16G421 Micromonas commoda HOM05D002312 ORTHO05D007981 9.2e-06 55.1 35 62.9


User provided reference genes

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