Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb070300 Zea mays HOM05D003247 ORTHO05D003974 4.3e-80 301.2 147 100.0
Zm00001eb038870 Zea mays HOM05D003247 ORTHO05D003974 2.1e-79 298.9 147 99.3
Zm00001eb326750 Zea mays HOM05D003247 ORTHO05D003974 3.1e-78 295.0 147 98.0
Duzib205G1189 Durio zibethinus HOM05D003247 ORTHO05D003974 2.7e-66 255.4 147 81.0
AT1G63770 Arabidopsis thaliana HOM05D003247 ORTHO05D003974 4.6e-66 254.6 147 81.6
AL2G11370 Arabidopsis lyrata HOM05D003247 ORTHO05D003974 1.0e-65 253.4 147 81.0
Aqoxy5G04015 Aquilegia oxysepala HOM05D003247 ORTHO05D003974 1.3e-65 253.1 147 79.6
CARHR047420 Cardamine hirsuta HOM05D003247 ORTHO05D003974 1.3e-65 253.1 147 81.6
Glyma.08G015900 Glycine max HOM05D003247 ORTHO05D003974 1.3e-65 253.1 147 81.0
TAR636G0433 Trochodendron aralioides HOM05D003247 ORTHO05D003974 1.3e-65 253.1 147 79.6
arahy.Tifrunner.gnm1.ann1.5U7DNF Arachis hypogaea HOM05D003247 ORTHO05D003974 1.8e-65 252.7 147 79.6
Carub.0002s0107 Capsella rubella HOM05D003247 ORTHO05D003974 1.8e-65 252.7 147 81.0
Thhalv10023233m.g Eutrema salsugineum HOM05D003247 ORTHO05D003974 1.8e-65 252.7 147 81.0
Gohir.A03G018700 Gossypium hirsutum HOM05D003247 ORTHO05D003974 3.0e-65 251.9 147 81.0
TPR.G12767 Trifolium pratense HOM05D003247 ORTHO05D003974 3.0e-65 251.9 147 81.0
CANSAT35G0036 Cannabis sativa HOM05D003247 ORTHO05D003974 3.9e-65 251.5 147 82.3
Glyma.05G209200 Glycine max HOM05D003247 ORTHO05D003974 5.1e-65 251.1 147 80.3
Gorai.003G157400 Gossypium raimondii HOM05D003247 ORTHO05D003974 5.1e-65 251.1 147 81.0
HanXRQChr13g0416311 Helianthus annuus HOM05D003247 ORTHO05D003974 6.7e-65 250.8 147 78.9
Nn6g33377 Nelumbo nucifera HOM05D003247 ORTHO05D003974 6.7e-65 250.8 147 79.6
Phvul.002G290904 Phaseolus vulgaris HOM05D003247 ORTHO05D003974 6.7e-65 250.8 147 81.0
Sc01g0005540 Simmondsia chinensis HOM05D003247 ORTHO05D003974 6.7e-65 250.8 147 81.6
THA.LOC104809378 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 6.7e-65 250.8 147 81.0
Cpa.g.sc214.14 Carica papaya HOM05D003247 ORTHO05D003974 8.7e-65 250.4 147 78.9
CiPaw.11G133400 Carya illinoinensis HOM05D003247 ORTHO05D003974 8.7e-65 250.4 147 78.9
PGR031G0275 Punica granatum HOM05D003247 ORTHO05D003974 8.7e-65 250.4 147 78.9
Gohir.D03G150200 Gossypium hirsutum HOM05D003247 ORTHO05D003974 1.1e-64 250.0 147 80.3
Duzib084G1173 Durio zibethinus HOM05D003247 ORTHO05D003974 1.9e-64 249.2 147 79.6
Manes.02G020950 Manihot esculenta HOM05D003247 ORTHO05D003974 1.9e-64 249.2 147 81.0
Medtr8g098525 Medicago truncatula HOM05D003247 ORTHO05D003974 1.9e-64 249.2 147 80.3
Psat7g031800 Pisum sativum HOM05D003247 ORTHO05D003974 1.9e-64 249.2 147 80.3
arahy.Tifrunner.gnm1.ann1.1Z7M3S Arachis hypogaea HOM05D003247 ORTHO05D003974 2.5e-64 248.8 147 78.2
BcaB07g31551 Brassica carinata HOM05D003247 ORTHO05D003974 4.3e-64 248.1 147 80.3
BcaC02g10366 Brassica carinata HOM05D003247 ORTHO05D003974 4.3e-64 248.1 147 80.3
Sabra01G0077100 Salix brachista HOM05D003247 ORTHO05D003974 4.3e-64 248.1 147 80.3
SalBow1G5596 Salvia bowleyana HOM05D003247 ORTHO05D003974 4.3e-64 248.1 147 78.9
Atru.chr9.2165 Acer truncatum HOM05D003247 ORTHO05D003974 5.7e-64 247.7 147 79.6
Ca_17516_v3 Cicer arietinum L. HOM05D003247 ORTHO05D003974 5.7e-64 247.7 147 78.9
Haze_08801 Corylus avellana HOM05D003247 ORTHO05D003974 5.7e-64 247.7 147 80.3
Dinv38927 Davidia involucrata HOM05D003247 ORTHO05D003974 5.7e-64 247.7 147 78.2
CSS0019820 Camellia sinensis var. sinensis HOM05D003247 ORTHO05D003974 7.4e-64 247.3 147 76.9
CSS0047123 Camellia sinensis var. sinensis HOM05D003247 ORTHO05D003974 7.4e-64 247.3 147 76.9
DCAR_008373 Daucus carota HOM05D003247 ORTHO05D003974 7.4e-64 247.3 147 76.9
MBI17_g42619_MAGBIO Magnolia biondii HOM05D003247 ORTHO05D003974 7.4e-64 247.3 147 78.2
SGA_v2.0_scaffold173G39167 Striga asiatica HOM05D003247 ORTHO05D003974 7.4e-64 247.3 147 78.2
HPP92_025967 Vanilla planifolia HOM05D003247 ORTHO05D003974 7.4e-64 247.3 147 76.9
Eucgr.D01833 Eucalyptus grandis HOM05D003247 ORTHO05D003974 9.7e-64 246.9 147 76.9
Nn1g01570 Nelumbo nucifera HOM05D003247 ORTHO05D003974 9.7e-64 246.9 147 78.9
BcaC08g43016 Brassica carinata HOM05D003247 ORTHO05D003974 1.3e-63 246.5 152 78.9
C06p02710 Brassica napus HOM05D003247 ORTHO05D003974 1.3e-63 246.5 152 78.9
FvH4_5g02730 Fragaria vesca HOM05D003247 ORTHO05D003974 1.3e-63 246.5 147 79.6
FAN18G0212 Fragaria x ananassa HOM05D003247 ORTHO05D003974 1.3e-63 246.5 147 79.6
Lj4g0006056 Lotus japonicus HOM05D003247 ORTHO05D003974 1.3e-63 246.5 147 80.3
Lalb_Chr16g0390071 Lupinus albus HOM05D003247 ORTHO05D003974 1.6e-63 246.1 147 78.9
QL12p032548 Quercus lobata HOM05D003247 ORTHO05D003974 1.6e-63 246.1 147 79.6
Hund14825 Selenicereus undatus HOM05D003247 ORTHO05D003974 1.6e-63 246.1 147 76.9
TWI60G0271 Tripterygium wilfordii HOM05D003247 ORTHO05D003974 1.6e-63 246.1 147 77.6
A06p04610 Brassica napus HOM05D003247 ORTHO05D003974 2.2e-63 245.7 158 75.9
BraA06t23665Z Brassica rapa HOM05D003247 ORTHO05D003974 2.2e-63 245.7 158 75.9
Ciclev10018808m.g Citrus clementina HOM05D003247 ORTHO05D003974 2.2e-63 245.7 147 80.3
Oeu011040.2 Olea europaea HOM05D003247 ORTHO05D003974 2.2e-63 245.7 147 76.9
PSO832G0897 Papaver somniferum HOM05D003247 ORTHO05D003974 2.2e-63 245.7 147 78.9
Cc08_g14910 Coffea canephora HOM05D003247 ORTHO05D003974 2.8e-63 245.4 147 77.6
HanXRQChr03g0086871 Helianthus annuus HOM05D003247 ORTHO05D003974 2.8e-63 245.4 147 76.9
MD14G1107600 Malus domestica HOM05D003247 ORTHO05D003974 2.8e-63 245.4 147 78.9
Prupe.5G103000 Prunus persica HOM05D003247 ORTHO05D003974 3.7e-63 245.0 147 78.9
FAN08G0767 Fragaria x ananassa HOM05D003247 ORTHO05D003974 4.8e-63 244.6 147 79.6
MBI18_g02832_MAGBIO Magnolia biondii HOM05D003247 ORTHO05D003974 6.3e-63 244.2 147 79.6
Potri.003G129500 Populus trichocarpa HOM05D003247 ORTHO05D003974 6.3e-63 244.2 147 77.6
vmacro11386 Vaccinium macrocarpon HOM05D003247 ORTHO05D003974 6.3e-63 244.2 147 75.5
ECA240G1820 Erigeron canadensis HOM05D003247 ORTHO05D003974 8.2e-63 243.8 147 76.9
Thecc.03G281500 Theobroma cacao HOM05D003247 ORTHO05D003974 8.2e-63 243.8 147 77.6
AUR62010702 Chenopodium quinoa HOM05D003247 ORTHO05D003974 1.1e-62 243.4 147 77.6
Rhsim02G0233100 Rhododendron simsii HOM05D003247 ORTHO05D003974 1.1e-62 243.4 147 76.2
RhsimUnG0160000 Rhododendron simsii HOM05D003247 ORTHO05D003974 1.1e-62 243.4 147 76.2
RcHm_v2.0_Chr7g0197201 Rosa chinensis HOM05D003247 ORTHO05D003974 1.4e-62 243.0 147 78.2
MSTRG.1858 Avicennia marina HOM05D003247 ORTHO05D003974 1.8e-62 242.7 147 76.9
Actinidia01994 Actinidia chinensis HOM05D003247 ORTHO05D003974 2.4e-62 242.3 147 77.6
FAN13G0605 Fragaria x ananassa HOM05D003247 ORTHO05D003974 2.4e-62 242.3 147 78.9
PSO063G5587 Papaver somniferum HOM05D003247 ORTHO05D003974 2.4e-62 242.3 147 78.2
CDE05G0892 Ceratophyllum demersum HOM05D003247 ORTHO05D003974 3.1e-62 241.9 147 76.9
AUR62017183 Chenopodium quinoa HOM05D003247 ORTHO05D003974 3.1e-62 241.9 147 77.6
Dinv37625 Davidia involucrata HOM05D003247 ORTHO05D003974 3.1e-62 241.9 147 76.9
Migut.A00742 Erythranthe guttata HOM05D003247 ORTHO05D003974 3.1e-62 241.9 147 74.1
MD06G1086400 Malus domestica HOM05D003247 ORTHO05D003974 3.1e-62 241.9 147 78.9
FAN04G2168 Fragaria x ananassa HOM05D003247 ORTHO05D003974 5.3e-62 241.1 147 78.9
Lsat_1_v5_gn_6_86420 Lactuca sativa HOM05D003247 ORTHO05D003974 5.3e-62 241.1 147 75.5
Ah.12g051750 Amaranthus hybridus HOM05D003247 ORTHO05D003974 9.0e-62 240.4 147 76.9
Migut.E01080 Erythranthe guttata HOM05D003247 ORTHO05D003974 1.5e-61 239.6 147 74.8
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 1.5e-61 239.6 147 74.1
GSVIVG01019731001 Vitis vinifera HOM05D003247 ORTHO05D003974 1.5e-61 239.6 147 76.2
ATR0680G039 Amborella trichopoda HOM05D003247 ORTHO05D003974 2.0e-61 239.2 147 74.8
Lalb_Chr05g0222801 Lupinus albus HOM05D003247 ORTHO05D003974 2.0e-61 239.2 147 76.2
THA.LOC104815066 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 2.0e-61 239.2 147 76.2
THA.LOC104817937 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 2.0e-61 239.2 147 75.5
VMungo0251G1424 Vigna mungo HOM05D003247 ORTHO05D003974 2.6e-61 238.8 147 75.5
C04p29680 Brassica napus HOM05D003247 ORTHO05D003974 4.5e-61 238.0 162 72.8
Lalb_Chr09g0332971 Lupinus albus HOM05D003247 ORTHO05D003974 4.5e-61 238.0 147 76.9
Actinidia14574 Actinidia chinensis HOM05D003247 ORTHO05D003974 5.9e-61 237.7 147 75.5
BolC4t24494H Brassica oleracea HOM05D003247 ORTHO05D003974 1.3e-60 236.5 171 69.6
PSO210G5645 Papaver somniferum HOM05D003247 ORTHO05D003974 1.7e-60 236.1 146 75.3
PSO210G5648 Papaver somniferum HOM05D003247 ORTHO05D003974 1.7e-60 236.1 146 76.0
Potri.001G102126 Populus trichocarpa HOM05D003247 ORTHO05D003974 1.7e-60 236.1 145 77.2
CsaV3_5G002690 Cucumis sativus L. HOM05D003247 ORTHO05D003974 2.2e-60 235.7 147 75.5
Lj8A219G33 Lonicera japonica HOM05D003247 ORTHO05D003974 2.2e-60 235.7 148 76.4
Ah.02g110410 Amaranthus hybridus HOM05D003247 ORTHO05D003974 1.4e-59 233.0 146 74.0
TPR.G28250 Trifolium pratense HOM05D003247 ORTHO05D003974 5.5e-59 231.1 147 74.8
Nitab4.5_0002975g0050 Nicotiana tabacum HOM05D003247 ORTHO05D003974 1.6e-58 229.6 147 73.5
Sed0014492 Sechium edule HOM05D003247 ORTHO05D003974 2.1e-58 229.2 147 73.5
CAN.G774.61 Capsicum annuum HOM05D003247 ORTHO05D003974 2.7e-58 228.8 147 73.5
Sed0003481 Sechium edule HOM05D003247 ORTHO05D003974 3.6e-58 228.4 147 72.8
Peaxi162Scf00119g00138 Petunia axillaris HOM05D003247 ORTHO05D003974 4.6e-58 228.0 147 72.1
Nitab4.5_0001615g0030 Nicotiana tabacum HOM05D003247 ORTHO05D003974 1.4e-57 226.5 147 72.8
Sopen08g029560 Solanum pennellii HOM05D003247 ORTHO05D003974 1.8e-57 226.1 147 72.1
unitig_61.g26270 Utricularia gibba HOM05D003247 ORTHO05D003974 1.8e-57 226.1 147 70.7
Lalb_Chr05g0224671 Lupinus albus HOM05D003247 ORTHO05D003974 8.8e-57 223.8 147 71.4
EL10Ac5g12795 Beta vulgaris HOM05D003247 ORTHO05D003974 1.7e-55 219.5 136 74.3
MELO3C005688.2 Cucumis melo HOM05D003247 ORTHO05D003974 1.7e-55 219.5 172 64.0
Gohir.A08G183600 Gossypium hirsutum HOM05D003247 ORTHO05D003974 6.3e-55 217.6 147 72.1
Pp3c26_1330 Physcomitrium patens HOM05D003247 ORTHO05D003974 6.3e-55 217.6 146 69.2
Mapoly0042s0035 Marchantia polymorpha HOM05D003247 ORTHO05D003974 4.1e-54 214.9 146 69.9
Pp3c15_1150 Physcomitrium patens HOM05D003247 ORTHO05D003974 4.1e-54 214.9 146 67.8
EL10Ac9g20777 Beta vulgaris HOM05D003247 ORTHO05D003974 9.1e-54 213.8 135 74.8
Sabra01G0077200 Salix brachista HOM05D003247 ORTHO05D003974 1.5e-53 213.0 147 73.5
SMO119G0190 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 2.6e-53 212.2 146 67.8
BraA06t25281Z Brassica rapa HOM05D003247 ORTHO05D003974 4.5e-53 211.5 147 71.4
SMO119G0209 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 1.0e-52 210.3 146 67.1
SMO119G0357 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 5.0e-52 208.0 146 66.4
Pp3c9_1240 Physcomitrium patens HOM05D003247 ORTHO05D003974 8.5e-52 207.2 146 66.4
SMO351G0363 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 3.2e-51 205.3 146 66.4
BolC6t35397H Brassica oleracea HOM05D003247 ORTHO05D003974 4.2e-51 204.9 152 69.1
Lsat_1_v5_gn_6_86400 Lactuca sativa HOM05D003247 ORTHO05D003974 4.2e-51 204.9 147 65.3
CSS0029032 Camellia sinensis var. sinensis HOM05D003247 ORTHO05D003974 7.9e-50 200.7 120 77.5
AagrBONN_evm.TU.Sc2ySwM_228.2960 Anthoceros agrestis HOM05D003247 ORTHO05D003974 2.3e-49 199.1 146 63.7
Aa31LG2G950 Aethionema arabicum HOM05D003247 ORTHO05D003974 4.4e-48 194.9 176 59.7
Medtr8g098535 Medicago truncatula HOM05D003247 ORTHO05D003974 8.2e-47 190.7 111 79.3
CBR_g30015 Chara braunii HOM05D003247 ORTHO05D003974 1.4e-46 189.9 146 58.2
Gohir.D08G202250 Gossypium hirsutum HOM05D003247 ORTHO05D003974 2.0e-45 186.0 133 69.2
CBR_g951 Chara braunii HOM05D003247 ORTHO05D003974 1.4e-43 179.9 146 57.5
Sc01g0009690 Simmondsia chinensis HOM05D003247 ORTHO05D003974 3.9e-41 171.8 108 76.9
A06p21950 Brassica napus HOM05D003247 ORTHO05D003974 6.7e-41 171.0 107 76.6
TWI81G0748 Tripterygium wilfordii HOM05D003247 ORTHO05D003974 1.3e-39 166.8 110 72.7
MCO16G652 Micromonas commoda HOM05D003247 ORTHO05D003974 2.8e-39 165.6 145 53.8
CDE08G0631 Ceratophyllum demersum HOM05D003247 ORTHO05D003974 1.6e-37 159.8 108 70.4
SMO169G0195 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 1.7e-36 156.4 145 51.0
SHI07163 Sapria himalayana HOM05D003247 ORTHO05D003974 2.2e-36 156.0 107 67.3
Cre17.g736650 Chlamydomonas reinhardtii HOM05D003247 ORTHO05D003974 4.0e-33 145.2 146 50.0
Gorai.004G213400 Gossypium raimondii HOM05D003247 ORTHO05D003974 4.8e-31 138.3 110 63.6
TAR629G1189 Trochodendron aralioides HOM05D003247 ORTHO05D003974 4.1e-30 135.2 77 81.8
PRCOL_00005594 Prasinoderma coloniale HOM05D003247 ORTHO05D003974 5.0e-28 128.3 150 48.0
COL.COLO4_00113 Corchorus olitorius HOM05D003247 ORTHO05D003974 1.3e-15 87.0 40 97.5
MCO13G113 Micromonas commoda HOM05D003247 ORTHO05D003974 1.8e-14 83.2 157 38.2
Lsat_1_v5_gn_2_26081 Lactuca sativa HOM05D003247 ORTHO05D002149 2.3e-12 76.3 38 84.2
Lsat_1_v5_gn_5_94840 Lactuca sativa HOM05D002109 ORTHO05D002149 5.0e-12 75.1 38 84.2
Potri.001G101975 Populus trichocarpa HOM05D003247 ORTHO05D003974 1.0e-09 67.4 43 76.7
Cre04.g213250 Chlamydomonas reinhardtii HOM05D003247 ORTHO05D003974 1.8e-09 66.6 83 41.0


User provided reference genes

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