Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb069370 Zea mays HOM05D000923 ORTHO05D000720 2.0e-38 161.8 72 100.0
Zm00001eb373070 Zea mays HOM05D000923 ORTHO05D000720 2.3e-18 95.1 44 97.7
Zm00001eb215500 Zea mays HOM05D000923 ORTHO05D000720 3.1e-15 84.7 44 90.9
Zm00001eb151260 Zea mays HOM05D000923 ORTHO05D000720 4.1e-15 84.3 43 90.7
Zm00001eb216810 Zea mays HOM05D000923 ORTHO05D000720 4.1e-15 84.3 43 90.7
Zm00001eb054170 Zea mays HOM05D000923 ORTHO05D000720 1.5e-14 82.4 43 86.0
Zm00001eb007080 Zea mays HOM05D000923 ORTHO05D000720 2.6e-14 81.6 43 88.4
Os03g0701700 Oryza sativa ssp. japonica HOM05D000923 ORTHO05D000720 1.2e-11 72.8 43 74.4
MBI18_g25088_MAGBIO Magnolia biondii HOM05D000923 ORTHO05D000720 4.3e-09 64.3 43 67.4
TWI14G0514 Tripterygium wilfordii HOM05D000923 ORTHO05D000720 1.3e-08 62.8 43 65.1
TWI59G0732 Tripterygium wilfordii HOM05D000923 ORTHO05D000720 1.7e-08 62.4 86 41.9
Potri.002G201500 Populus trichocarpa HOM05D000923 ORTHO05D000720 2.8e-08 61.6 43 65.1
Ca_09193_v3 Cicer arietinum L. HOM05D000923 ORTHO05D000720 6.3e-08 60.5 43 62.8
Cpa.g.sc151.32 Carica papaya HOM05D000923 ORTHO05D000720 8.2e-08 60.1 84 41.7
Eucgr.K03513 Eucalyptus grandis HOM05D000923 ORTHO05D000720 8.2e-08 60.1 43 58.1
Medtr7g109150 Medicago truncatula HOM05D000923 ORTHO05D000720 8.2e-08 60.1 43 62.8
arahy.Tifrunner.gnm1.ann1.X6L8L6 Arachis hypogaea HOM05D000923 ORTHO05D000720 1.1e-07 59.7 43 60.5
HanXRQChr06g0167711 Helianthus annuus HOM05D000923 ORTHO05D000720 1.1e-07 59.7 57 50.9
Psat5g187920 Pisum sativum HOM05D000923 ORTHO05D000720 1.1e-07 59.7 43 60.5
MD03G1292200 Malus domestica HOM05D000923 ORTHO05D000720 1.4e-07 59.3 43 60.5
Sabra02G0157500 Salix brachista HOM05D000923 ORTHO05D000720 1.4e-07 59.3 43 60.5
arahy.Tifrunner.gnm1.ann1.QCZR2J Arachis hypogaea HOM05D000923 ORTHO05D000720 1.8e-07 58.9 43 60.5
Duzib187G2006 Durio zibethinus HOM05D000923 ORTHO05D000720 1.8e-07 58.9 43 62.8
Phvul.001G210200 Phaseolus vulgaris HOM05D000923 ORTHO05D000720 1.8e-07 58.9 43 60.5
VMungo1383G1430 Vigna mungo HOM05D000923 ORTHO05D000720 1.8e-07 58.9 43 60.5
Glyma.03G216700 Glycine max HOM05D000923 ORTHO05D000720 2.4e-07 58.5 43 60.5
Prupe.8G265200 Prunus persica HOM05D000923 ORTHO05D000720 2.4e-07 58.5 43 58.1
MD06G1001100 Malus domestica HOM05D000923 ORTHO05D000720 3.1e-07 58.2 43 58.1
MD11G1306200 Malus domestica HOM05D000923 ORTHO05D000720 3.1e-07 58.2 43 58.1
Peaxi162Scf00001g34002 Petunia axillaris HOM05D000923 ORTHO05D000720 3.1e-07 58.2 43 60.5
RcHm_v2.0_Chr6g0294491 Rosa chinensis HOM05D000923 ORTHO05D000720 3.1e-07 58.2 86 39.5
TPR.G9631 Trifolium pratense HOM05D000923 ORTHO05D000720 3.1e-07 58.2 43 62.8
Duzib133G0591 Durio zibethinus HOM05D000923 ORTHO05D000720 4.1e-07 57.8 43 60.5
Zm00001eb282800 Zea mays HOM05D000923 ORTHO05D000720 4.1e-07 57.8 43 55.8
Glyma.19G213300 Glycine max HOM05D000923 ORTHO05D000720 5.3e-07 57.4 43 58.1
MBI19_g08247_MAGBIO Magnolia biondii HOM05D000923 ORTHO05D000720 5.3e-07 57.4 43 58.1
Aqoxy3G00627 Aquilegia oxysepala HOM05D000923 ORTHO05D000720 6.9e-07 57.0 43 55.8
CiPaw.07G112400 Carya illinoinensis HOM05D000923 ORTHO05D000720 6.9e-07 57.0 48 56.2
PGR044G0741 Punica granatum HOM05D000923 ORTHO05D000720 6.9e-07 57.0 45 57.8
Thecc.01G306100 Theobroma cacao HOM05D000923 ORTHO05D000720 6.9e-07 57.0 43 60.5
TAR636G2421 Trochodendron aralioides HOM05D000923 ORTHO05D000720 6.9e-07 57.0 43 60.5
Aqoxy2G02871 Aquilegia oxysepala HOM05D000923 ORTHO05D000720 9.1e-07 56.6 43 53.5
Dinv44683 Davidia involucrata HOM05D000923 ORTHO05D000720 9.1e-07 56.6 43 62.8
Nitab4.5_0000803g0010 Nicotiana tabacum HOM05D000923 ORTHO05D000720 9.1e-07 56.6 43 58.1
HPP92_016955 Vanilla planifolia HOM05D000923 ORTHO05D000720 9.1e-07 56.6 43 58.1
CSS0011184 Camellia sinensis var. sinensis HOM05D000923 ORTHO05D000720 1.2e-06 56.2 43 58.1
CSS0020972 Camellia sinensis var. sinensis HOM05D000923 ORTHO05D000720 1.2e-06 56.2 43 58.1
Gohir.A12G128400 Gossypium hirsutum HOM05D000923 ORTHO05D000720 1.2e-06 56.2 43 58.1
Lj1g0014358 Lotus japonicus HOM05D000923 ORTHO05D000720 1.2e-06 56.2 43 58.1
QL12p027757 Quercus lobata HOM05D000923 ORTHO05D000720 1.2e-06 56.2 43 55.8
GSVIVG01028053001 Vitis vinifera HOM05D000923 ORTHO05D000720 1.2e-06 56.2 43 55.8
Duzib138G1057 Durio zibethinus HOM05D000923 ORTHO05D000720 1.5e-06 55.8 43 60.5
FAN19G0146 Fragaria x ananassa HOM05D000923 ORTHO05D000720 1.5e-06 55.8 43 62.8
Nitab4.5_0000116g0290 Nicotiana tabacum HOM05D000923 ORTHO05D000720 1.5e-06 55.8 43 55.8
Oeu006449.1 Olea europaea HOM05D000923 ORTHO05D000720 1.5e-06 55.8 86 38.4
Solyc09g075440.4 Solanum lycopersicum HOM05D000923 ORTHO05D000720 1.5e-06 55.8 43 58.1
Sopen09g030220 Solanum pennellii HOM05D000923 ORTHO05D000720 1.5e-06 55.8 43 58.1
PGSC0003DMG400031819 Solanum tuberosum HOM05D000923 ORTHO05D000720 1.5e-06 55.8 43 58.1
CDE01G0739 Ceratophyllum demersum HOM05D000923 ORTHO05D000720 2.0e-06 55.5 54 50.0
COL.COLO4_23303 Corchorus olitorius HOM05D000923 ORTHO05D000720 2.0e-06 55.5 43 55.8
Eucgr.J02086 Eucalyptus grandis HOM05D000923 ORTHO05D000720 2.0e-06 55.5 43 58.1
Hma1.2p1_0494F.1_g165480 Hydrangea macrophylla HOM05D000923 ORTHO05D000720 2.0e-06 55.5 43 55.8
Lalb_Chr04g0259871 Lupinus albus HOM05D000923 ORTHO05D000720 2.0e-06 55.5 43 60.5
Duzib213G0205 Durio zibethinus HOM05D000923 ORTHO05D000720 2.6e-06 55.1 43 60.5
Duzib268G0841 Durio zibethinus HOM05D000923 ORTHO05D000720 2.6e-06 55.1 43 60.5
Gohir.A01G041500 Gossypium hirsutum HOM05D000923 ORTHO05D000720 2.6e-06 55.1 43 60.5
Gohir.D01G028800 Gossypium hirsutum HOM05D000923 ORTHO05D000720 2.6e-06 55.1 43 60.5
Gohir.D12G132000 Gossypium hirsutum HOM05D000923 ORTHO05D000720 2.6e-06 55.1 43 58.1
Gorai.002G038300 Gossypium raimondii HOM05D000923 ORTHO05D000720 2.6e-06 55.1 43 60.5
Gorai.008G143100 Gossypium raimondii HOM05D000923 ORTHO05D000720 2.6e-06 55.1 43 58.1
Hund19949 Selenicereus undatus HOM05D000923 ORTHO05D000720 2.6e-06 55.1 43 60.5
Ah.08g210630 Amaranthus hybridus HOM05D000923 ORTHO05D000720 3.4e-06 54.7 43 58.1
FvH4_1g23240 Fragaria vesca HOM05D000923 ORTHO05D000720 3.4e-06 54.7 43 60.5
THA.LOC104802182 Tarenaya hassleriana HOM05D000923 ORTHO05D000720 3.4e-06 54.7 43 53.5
THA.LOC104817476 Tarenaya hassleriana HOM05D000923 ORTHO05D000720 3.4e-06 54.7 43 53.5
THA.LOC104827701 Tarenaya hassleriana HOM05D000923 ORTHO05D000720 3.4e-06 54.7 43 53.5
THA.LOC104827702 Tarenaya hassleriana HOM05D000923 ORTHO05D000720 3.4e-06 54.7 43 53.5
TWI38G0669 Tripterygium wilfordii HOM05D000923 ORTHO05D000720 3.4e-06 54.7 43 58.1
EL10Ac7g16933 Beta vulgaris HOM05D000923 ORTHO05D000720 4.5e-06 54.3 43 58.1
Cpa.g.sc84.52 Carica papaya HOM05D000923 ORTHO05D000720 4.5e-06 54.3 43 60.5
ECA236G1712 Erigeron canadensis HOM05D000923 ORTHO05D000720 4.5e-06 54.3 48 50.0
FAN23G1720 Fragaria x ananassa HOM05D000923 ORTHO05D000720 4.5e-06 54.3 43 60.5
FAN26G0526 Fragaria x ananassa HOM05D000923 ORTHO05D000720 4.5e-06 54.3 43 60.5
FAN28G2607 Fragaria x ananassa HOM05D000923 ORTHO05D000720 4.5e-06 54.3 43 60.5
Lsat_1_v5_gn_8_164760 Lactuca sativa HOM05D000923 ORTHO05D000720 4.5e-06 54.3 48 52.1
RcHm_v2.0_Chr2g0118071 Rosa chinensis HOM05D000923 ORTHO05D000720 4.5e-06 54.3 43 60.5
ATR0763G147 Amborella trichopoda HOM05D000923 ORTHO05D000720 5.9e-06 53.9 43 58.1
CSS0002958 Camellia sinensis var. sinensis HOM05D000923 ORTHO05D000720 5.9e-06 53.9 43 53.5
AUR62028548 Chenopodium quinoa HOM05D000923 ORTHO05D000720 5.9e-06 53.9 43 58.1
AUR62033500 Chenopodium quinoa HOM05D000923 ORTHO05D000720 5.9e-06 53.9 43 58.1
Cc05_g10220 Coffea canephora HOM05D000923 ORTHO05D000720 5.9e-06 53.9 43 60.5
Gohir.A04G047100 Gossypium hirsutum HOM05D000923 ORTHO05D000720 5.9e-06 53.9 43 58.1
Gohir.D05G333100 Gossypium hirsutum HOM05D000923 ORTHO05D000720 5.9e-06 53.9 43 58.1
Gorai.009G358200 Gossypium raimondii HOM05D000923 ORTHO05D000720 5.9e-06 53.9 43 58.1
Lalb_Chr21g0309341 Lupinus albus HOM05D000923 ORTHO05D000720 5.9e-06 53.9 43 55.8
Sed0001436 Sechium edule HOM05D000923 ORTHO05D000720 5.9e-06 53.9 43 53.5
TWI15G0860 Tripterygium wilfordii HOM05D000923 ORTHO05D000720 5.9e-06 53.9 43 58.1
Ciclev10019003m.g Citrus clementina HOM05D000923 ORTHO05D000720 7.7e-06 53.5 43 58.1
MELO3C015961.2 Cucumis melo HOM05D000923 ORTHO05D000720 7.7e-06 53.5 43 51.2
CsaV3_7G029600 Cucumis sativus L. HOM05D000923 ORTHO05D000720 7.7e-06 53.5 43 51.2
ECA246G1852 Erigeron canadensis HOM05D000923 ORTHO05D000720 7.7e-06 53.5 43 60.5
Migut.D00127 Erythranthe guttata HOM05D000923 ORTHO05D000720 7.7e-06 53.5 86 37.2
HanXRQChr06g0165941 Helianthus annuus HOM05D000923 ORTHO05D000720 7.7e-06 53.5 43 60.5


User provided reference genes

Program Settings