Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb069140 Zea mays HOM05D000382 ORTHO05D023050 8.5e-169 597.0 328 100.0
Zm00001eb431760 Zea mays HOM05D000382 ORTHO05D000391 1.4e-41 174.5 139 74.1
Os04g0637000 Oryza sativa ssp. japonica HOM05D000382 ORTHO05D023050 1.0e-33 148.3 133 67.7
Nn5g28956 Nelumbo nucifera HOM05D000382 ORTHO05D000391 1.6e-10 71.2 101 45.5
MBI05_g01290_MAGBIO Magnolia biondii HOM05D000382 ORTHO05D000391 2.8e-10 70.5 97 51.5
Thecc.01G109800 Theobroma cacao HOM05D000382 ORTHO05D000391 1.0e-09 68.6 90 50.0
CDE10G0771 Ceratophyllum demersum HOM05D000382 ORTHO05D000391 1.8e-09 67.8 100 46.0
PSO210G2007 Papaver somniferum HOM05D000382 ORTHO05D000391 1.8e-09 67.8 100 44.0
PSO447G0140 Papaver somniferum HOM05D000382 ORTHO05D000391 1.8e-09 67.8 100 44.0
TWI74G1035 Tripterygium wilfordii HOM05D000382 ORTHO05D000391 1.8e-09 67.8 89 51.7
TAR381G0657 Trochodendron aralioides HOM05D000382 ORTHO05D000391 4.0e-09 66.6 101 45.5
FAN26G2405 Fragaria x ananassa HOM05D000382 ORTHO05D000391 5.2e-09 66.2 90 50.0
RcHm_v2.0_Chr2g0115911 Rosa chinensis HOM05D000382 ORTHO05D000391 6.8e-09 65.9 101 47.5
Prupe.6G177200 Prunus persica HOM05D000382 ORTHO05D000391 8.9e-09 65.5 100 46.0
FvH4_1g21900 Fragaria vesca HOM05D000382 ORTHO05D000391 1.2e-08 65.1 90 48.9
FAN19G1028 Fragaria x ananassa HOM05D000382 ORTHO05D000391 1.2e-08 65.1 90 48.9
FAN23G0095 Fragaria x ananassa HOM05D000382 ORTHO05D000391 1.2e-08 65.1 90 48.9
Zm00001eb412510 Zea mays HOM05D000382 ORTHO05D000391 1.2e-08 65.1 167 36.5
Rhsim10G0154600 Rhododendron simsii HOM05D000382 ORTHO05D000391 1.5e-08 64.7 90 45.6
RhsimUnG0219100 Rhododendron simsii HOM05D000382 ORTHO05D000391 1.5e-08 64.7 90 45.6
Potri.005G082000 Populus trichocarpa HOM05D000382 ORTHO05D000391 2.6e-08 63.9 99 46.5
SalBow5G3289 Salvia bowleyana HOM05D000382 ORTHO05D000391 2.6e-08 63.9 103 44.7
SalBow5G4929 Salvia bowleyana HOM05D000382 ORTHO05D000391 2.6e-08 63.9 103 44.7
Actinidia28885 Actinidia chinensis HOM05D000382 ORTHO05D000391 3.4e-08 63.5 98 48.0
FAN28G1331 Fragaria x ananassa HOM05D000382 ORTHO05D000391 3.4e-08 63.5 90 47.8
Potri.007G085700 Populus trichocarpa HOM05D000382 ORTHO05D000391 5.8e-08 62.8 101 45.5
Nn1g05226 Nelumbo nucifera HOM05D000382 ORTHO05D000391 7.5e-08 62.4 110 42.7
CDE10G1289 Ceratophyllum demersum HOM05D000382 ORTHO05D000391 1.3e-07 61.6 175 34.9
Duzib264G0583 Durio zibethinus HOM05D000382 ORTHO05D000391 1.3e-07 61.6 90 47.8
PGR004G1178 Punica granatum HOM05D000382 ORTHO05D000391 1.3e-07 61.6 98 44.9
Cc07_g15790 Coffea canephora HOM05D000382 ORTHO05D000391 1.7e-07 61.2 93 46.2
Gohir.A12G092700 Gossypium hirsutum HOM05D000382 ORTHO05D000391 1.7e-07 61.2 97 47.4
Psat5g088000 Pisum sativum HOM05D000382 ORTHO05D000391 1.7e-07 61.2 78 51.3
Sabra05G0067100 Salix brachista HOM05D000382 ORTHO05D000391 1.7e-07 61.2 103 43.7
Gohir.A11G197200 Gossypium hirsutum HOM05D000382 ORTHO05D000391 2.2e-07 60.8 97 44.3
Gohir.D12G094100 Gossypium hirsutum HOM05D000382 ORTHO05D000391 2.2e-07 60.8 97 47.4
Gorai.008G102300 Gossypium raimondii HOM05D000382 ORTHO05D000391 2.2e-07 60.8 97 47.4
MD01G1021600 Malus domestica HOM05D000382 ORTHO05D000391 2.2e-07 60.8 89 46.1
CiPaw.03G136800 Carya illinoinensis HOM05D000382 ORTHO05D000391 2.9e-07 60.5 98 48.0
MD15G1330400 Malus domestica HOM05D000382 ORTHO05D000391 2.9e-07 60.5 89 44.9
Aqoxy6G00510 Aquilegia oxysepala HOM05D000382 ORTHO05D000391 3.7e-07 60.1 109 44.0
SEGI_04964 Sequoiadendron giganteum HOM05D000382 ORTHO05D000391 3.7e-07 60.1 80 47.5
Ca_16553_v3 Cicer arietinum L. HOM05D000382 ORTHO05D000391 6.4e-07 59.3 100 43.0
DCAR_001004 Daucus carota HOM05D000382 ORTHO05D000391 6.4e-07 59.3 84 46.4
Actinidia08328 Actinidia chinensis HOM05D000382 ORTHO05D000391 8.3e-07 58.9 98 46.9
TPR.G21058 Trifolium pratense HOM05D000382 ORTHO05D000391 8.3e-07 58.9 100 43.0
Dinv21967 Davidia involucrata HOM05D000382 ORTHO05D000391 1.1e-06 58.5 89 44.9
Oeu002120.1 Olea europaea HOM05D000382 ORTHO05D000391 1.1e-06 58.5 97 40.2
Gohir.D11G225700 Gossypium hirsutum HOM05D000382 ORTHO05D000391 1.4e-06 58.2 97 43.3
Gorai.007G243200 Gossypium raimondii HOM05D000382 ORTHO05D000391 1.4e-06 58.2 97 43.3
HanXRQChr09g0254651 Helianthus annuus HOM05D000382 ORTHO05D000391 1.4e-06 58.2 90 43.3
Manes.12G140100 Manihot esculenta HOM05D000382 ORTHO05D000391 1.4e-06 58.2 111 43.2
PSO541G2974 Papaver somniferum HOM05D000382 ORTHO05D000391 1.4e-06 58.2 89 46.1
Potri.002G090700 Populus trichocarpa HOM05D000382 ORTHO05D000391 1.4e-06 58.2 91 45.1
SGA_v2.0_scaffold47G17731 Striga asiatica HOM05D000382 ORTHO05D000391 1.4e-06 58.2 103 44.7
Ciclev10025940m.g Citrus clementina HOM05D000382 ORTHO05D000391 1.9e-06 57.8 100 43.0
Lj2C560G2 Lonicera japonica HOM05D000382 ORTHO05D000391 1.9e-06 57.8 90 46.7
Medtr3g087940 Medicago truncatula HOM05D000382 ORTHO05D000391 1.9e-06 57.8 100 42.0
VMungo1309G2951 Vigna mungo HOM05D000382 ORTHO05D000391 1.9e-06 57.8 91 42.9
Atru.chr4.315 Acer truncatum HOM05D000382 ORTHO05D000391 2.4e-06 57.4 100 41.0
PSO675G1283 Papaver somniferum HOM05D000382 ORTHO05D000391 2.4e-06 57.4 97 45.4
CSS0026039 Camellia sinensis var. sinensis HOM05D000382 ORTHO05D000391 3.2e-06 57.0 100 44.0
QL06p033275 Quercus lobata HOM05D000382 ORTHO05D000391 3.2e-06 57.0 101 43.6
HanXRQChr15g0495951 Helianthus annuus HOM05D000382 ORTHO05D000391 4.1e-06 56.6 90 42.2
TWI53G0696 Tripterygium wilfordii HOM05D000382 ORTHO05D000391 4.1e-06 56.6 89 48.3
Manes.18G071700 Manihot esculenta HOM05D000382 ORTHO05D000391 5.4e-06 56.2 89 43.8
MSTRG.3804 Avicennia marina HOM05D000382 ORTHO05D000391 7.0e-06 55.8 99 43.4
A06p32060 Brassica napus HOM05D000382 ORTHO05D000391 7.0e-06 55.8 103 38.8
BraA06t26135Z Brassica rapa HOM05D000382 ORTHO05D000391 7.0e-06 55.8 103 38.8
ClCG07G009350 Citrullus lanatus HOM05D000382 ORTHO05D000391 7.0e-06 55.8 92 44.6
Gohir.A10G086300 Gossypium hirsutum HOM05D000382 ORTHO05D000391 7.0e-06 55.8 98 42.9
Hund13653 Selenicereus undatus HOM05D000382 ORTHO05D000391 7.0e-06 55.8 109 39.4
Haze_00545 Corylus avellana HOM05D000382 ORTHO05D000391 9.2e-06 55.5 90 44.4
Lj4A879T67 Lonicera japonica HOM05D000382 ORTHO05D000391 9.2e-06 55.5 90 45.6
HPP92_013355 Vanilla planifolia HOM05D000382 ORTHO05D000391 9.2e-06 55.5 90 44.4
HPP92_013370 Vanilla planifolia HOM05D000382 ORTHO05D000391 9.2e-06 55.5 90 44.4


User provided reference genes

Program Settings