Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb068980 Zea mays HOM05D003963 ORTHO05D004558 4.1e-204 715.3 633 100.0
Zm00001eb347870 Zea mays HOM05D003963 ORTHO05D010684 1.5e-116 424.5 221 95.0
Os04g0640900 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 2.0e-86 324.3 619 74.8
Os04g0458200 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 8.2e-35 152.9 227 43.2
MBI05_g46461_MAGBIO Magnolia biondii HOM05D003963 ORTHO05D004558 1.6e-30 138.7 631 62.6
Zm00001eb423980 Zea mays HOM05D003963 ORTHO05D004558 3.9e-29 134.0 617 63.4
PSO675G1096 Papaver somniferum HOM05D003963 ORTHO05D004558 5.7e-28 130.2 248 38.3
Zm00001eb182980 Zea mays HOM05D003963 ORTHO05D004558 9.7e-28 129.4 251 41.4
Nn5g28887 Nelumbo nucifera HOM05D003963 ORTHO05D004558 1.1e-26 125.9 258 35.7
PSO541G3622 Papaver somniferum HOM05D003963 ORTHO05D004558 1.1e-26 125.9 246 36.6
Zm00001eb080920 Zea mays HOM05D003963 ORTHO05D004558 1.1e-26 125.9 612 63.1
Aqoxy6G00464 Aquilegia oxysepala HOM05D003963 ORTHO05D004558 5.3e-26 123.6 251 35.9
MD08G1221900 Malus domestica HOM05D003963 ORTHO05D004558 7.7e-25 119.8 224 39.3
Sed0018276 Sechium edule HOM05D003963 ORTHO05D004558 2.2e-24 118.2 218 40.4
TAR381G1468 Trochodendron aralioides HOM05D003963 ORTHO05D004558 2.9e-24 117.9 631 62.1
Prupe.1G559700 Prunus persica HOM05D003963 ORTHO05D004558 6.5e-24 116.7 219 42.0
MD15G1414300 Malus domestica HOM05D003963 ORTHO05D004558 1.9e-23 115.2 228 39.0
Ca_18336_v3 Cicer arietinum L. HOM05D003963 ORTHO05D004558 7.2e-23 113.2 260 34.2
RcHm_v2.0_Chr7g0225521 Rosa chinensis HOM05D003963 ORTHO05D004558 7.2e-23 113.2 218 40.8
Gohir.D13G056000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 9.4e-23 112.8 249 34.9
Zm00001eb244890 Zea mays HOM05D003963 ORTHO05D004558 9.4e-23 112.8 246 35.4
ClCG06G009720 Citrullus lanatus HOM05D003963 ORTHO05D004558 1.2e-22 112.5 251 37.5
MELO3C020350.2 Cucumis melo HOM05D003963 ORTHO05D004558 1.2e-22 112.5 253 37.2
CSS0000527 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 2.1e-22 111.7 214 37.9
CSS0022227 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 2.1e-22 111.7 214 37.9
Cc02_g21840 Coffea canephora HOM05D003963 ORTHO05D004558 2.1e-22 111.7 214 39.3
Nn1g05173 Nelumbo nucifera HOM05D003963 ORTHO05D004558 2.7e-22 111.3 247 37.7
Os02g0575700 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 4.6e-22 110.5 629 61.0
TWI23G1041 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 4.6e-22 110.5 251 37.1
Sc14g0002710 Simmondsia chinensis HOM05D003963 ORTHO05D004558 7.9e-22 109.8 216 39.8
TWI59G0617 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 7.9e-22 109.8 259 34.0
FvH4_5g30651 Fragaria vesca HOM05D003963 ORTHO05D004558 1.0e-21 109.4 217 37.8
Medtr4g094290 Medicago truncatula HOM05D003963 ORTHO05D004558 1.0e-21 109.4 264 33.7
Potri.001G206600 Populus trichocarpa HOM05D003963 ORTHO05D004558 1.4e-21 109.0 648 56.3
Potri.003G023300 Populus trichocarpa HOM05D003963 ORTHO05D004558 1.4e-21 109.0 257 36.6
TPR.G10467 Trifolium pratense HOM05D003963 ORTHO05D004558 1.4e-21 109.0 260 33.1
CANSAT11G0470 Cannabis sativa HOM05D003963 ORTHO05D004558 1.8e-21 108.6 214 36.4
Gohir.A13G065700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 1.8e-21 108.6 242 35.1
Duzib248G1667 Durio zibethinus HOM05D003963 ORTHO05D004558 3.0e-21 107.8 636 56.6
COL.COLO4_20869 Corchorus olitorius HOM05D003963 ORTHO05D004558 3.9e-21 107.5 639 56.7
CsaV3_2G011200 Cucumis sativus L. HOM05D003963 ORTHO05D004558 3.9e-21 107.5 253 35.2
Hma1.2p1_0217F.1_g091740 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 3.9e-21 107.5 208 39.4
Psat7g097440 Pisum sativum HOM05D003963 ORTHO05D004558 3.9e-21 107.5 260 32.7
Gorai.013G063300 Gossypium raimondii HOM05D003963 ORTHO05D004558 5.1e-21 107.1 641 58.2
QL11p019412 Quercus lobata HOM05D003963 ORTHO05D004558 6.7e-21 106.7 221 35.7
Duzib052G0219 Durio zibethinus HOM05D003963 ORTHO05D004558 8.8e-21 106.3 634 56.9
FAN13G1550 Fragaria x ananassa HOM05D003963 ORTHO05D004558 2.0e-20 105.1 221 36.7
Thecc.02G143400 Theobroma cacao HOM05D003963 ORTHO05D004558 2.6e-20 104.8 643 55.5
Oeu037198.2 Olea europaea HOM05D003963 ORTHO05D004558 3.3e-20 104.4 230 35.7
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 4.4e-20 104.0 220 37.7
Oeu037196.1 Olea europaea HOM05D003963 ORTHO05D004558 4.4e-20 104.0 230 35.7
Sabra03G0014700 Salix brachista HOM05D003963 ORTHO05D004558 5.7e-20 103.6 255 36.9
Ciclev10000572m.g Citrus clementina HOM05D003963 ORTHO05D004558 7.4e-20 103.2 242 35.5
Migut.B00637 Erythranthe guttata HOM05D003963 ORTHO05D004558 7.4e-20 103.2 208 36.5
Glyma.05G120100 Glycine max HOM05D003963 ORTHO05D004558 9.7e-20 102.8 218 36.7
CiPaw.06G151200 Carya illinoinensis HOM05D003963 ORTHO05D004558 1.3e-19 102.4 252 34.5
Dinv24217 Davidia involucrata HOM05D003963 ORTHO05D004558 1.7e-19 102.1 243 34.6
Glyma.08G074900 Glycine max HOM05D003963 ORTHO05D004558 1.7e-19 102.1 216 35.6
Actinidia28070 Actinidia chinensis HOM05D003963 ORTHO05D004558 2.8e-19 101.3 219 37.4
Ah.09g232110 Amaranthus hybridus HOM05D003963 ORTHO05D004558 3.7e-19 100.9 237 38.0
Sp2g27620 Schrenkiella parvula HOM05D003963 ORTHO05D004558 3.7e-19 100.9 211 37.4
AUR62031300 Chenopodium quinoa HOM05D003963 ORTHO05D004558 4.8e-19 100.5 244 35.7
Dinv19323 Davidia involucrata HOM05D003963 ORTHO05D004558 4.8e-19 100.5 232 37.5
Peaxi162Scf00001g00041 Petunia axillaris HOM05D003963 ORTHO05D004558 4.8e-19 100.5 238 35.7
Peaxi162Scf00001g00043 Petunia axillaris HOM05D003963 ORTHO05D004558 4.8e-19 100.5 238 35.7
Cfa005579 Carpinus fangiana HOM05D003963 ORTHO05D004558 6.3e-19 100.1 219 37.4
Hma1.2p1_0557F.1_g178060 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 6.3e-19 100.1 217 37.8
vmacro01810 Vaccinium macrocarpon HOM05D003963 ORTHO05D004558 6.3e-19 100.1 220 38.6
Eucgr.I02691 Eucalyptus grandis HOM05D003963 ORTHO05D004558 8.2e-19 99.8 612 59.0
Atru.chr6.908 Acer truncatum HOM05D003963 ORTHO05D004558 1.1e-18 99.4 219 37.4
Lj4g0008212 Lotus japonicus HOM05D003963 ORTHO05D004558 1.1e-18 99.4 250 34.4
GSVIVG01038733001 Vitis vinifera HOM05D003963 ORTHO05D004558 1.1e-18 99.4 241 35.3
CAN.G523.95 Capsicum annuum HOM05D003963 ORTHO05D004558 1.4e-18 99.0 219 36.5
Peaxi162Scf00003g00367 Petunia axillaris HOM05D003963 ORTHO05D004558 1.4e-18 99.0 222 36.5
Haze_10775 Corylus avellana HOM05D003963 ORTHO05D004558 2.4e-18 98.2 218 37.6
ECA236G3037 Erigeron canadensis HOM05D003963 ORTHO05D004558 2.4e-18 98.2 216 38.4
Manes.04G062400 Manihot esculenta HOM05D003963 ORTHO05D004558 2.4e-18 98.2 616 59.3
Gorai.005G217900 Gossypium raimondii HOM05D003963 ORTHO05D004558 3.1e-18 97.8 249 33.3
PGSC0003DMG400029740 Solanum tuberosum HOM05D003963 ORTHO05D004558 4.1e-18 97.4 218 35.3
AT5G64550 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 5.3e-18 97.1 208 36.5
Gohir.D02G195000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 5.3e-18 97.1 249 33.3
Lalb_Chr13g0291591 Lupinus albus HOM05D003963 ORTHO05D004558 5.3e-18 97.1 217 35.5
Solyc01g104910.3 Solanum lycopersicum HOM05D003963 ORTHO05D004558 5.3e-18 97.1 218 35.3
Cpa.g.sc0.13 Carica papaya HOM05D003963 ORTHO05D004558 6.9e-18 96.7 609 58.0
VMungo0251G0315 Vigna mungo HOM05D003963 ORTHO05D004558 6.9e-18 96.7 243 33.3
BcaC03g18430 Brassica carinata HOM05D003963 ORTHO05D004558 9.1e-18 96.3 207 36.2
Ah.14g085400 Amaranthus hybridus HOM05D003963 ORTHO05D004558 1.2e-17 95.9 215 38.6
HanXRQChr11g0337121 Helianthus annuus HOM05D003963 ORTHO05D004558 1.2e-17 95.9 207 39.6
Sabra03G0014600 Salix brachista HOM05D003963 ORTHO05D004558 1.2e-17 95.9 648 57.3
SalBow6G3757 Salvia bowleyana HOM05D003963 ORTHO05D004558 1.5e-17 95.5 213 35.2
SalBow6G4534 Salvia bowleyana HOM05D003963 ORTHO05D004558 1.5e-17 95.5 213 35.2
Sopen01g047420 Solanum pennellii HOM05D003963 ORTHO05D004558 2.0e-17 95.1 218 34.9
Nitab4.5_0003748g0020 Nicotiana tabacum HOM05D003963 ORTHO05D004558 2.6e-17 94.7 241 34.0
Phvul.002G206700 Phaseolus vulgaris HOM05D003963 ORTHO05D004558 2.6e-17 94.7 218 34.4
Aa31LG3G17400 Aethionema arabicum HOM05D003963 ORTHO05D004558 3.4e-17 94.4 215 36.3
Aa31sc1834G20 Aethionema arabicum HOM05D003963 ORTHO05D004558 3.4e-17 94.4 215 36.3
Nitab4.5_0002865g0100 Nicotiana tabacum HOM05D003963 ORTHO05D004558 3.4e-17 94.4 220 35.0
FAN04G2665 Fragaria x ananassa HOM05D003963 ORTHO05D004558 4.5e-17 94.0 618 57.8
Carub.0008s2535 Capsella rubella HOM05D003963 ORTHO05D004558 7.7e-17 93.2 211 36.0
MSTRG.16566 Avicennia marina HOM05D003963 ORTHO05D004558 1.0e-16 92.8 252 33.7
THA.LOC104799580 Tarenaya hassleriana HOM05D003963 ORTHO05D004558 1.0e-16 92.8 218 36.2
Lalb_Chr12g0208491 Lupinus albus HOM05D003963 ORTHO05D004558 1.3e-16 92.4 246 32.1
Thhalv10003819m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 2.2e-16 91.7 216 33.8
Rhsim11G0134700 Rhododendron simsii HOM05D003963 ORTHO05D004558 2.2e-16 91.7 219 36.1
Aa31LG1G17380 Aethionema arabicum HOM05D003963 ORTHO05D004558 2.9e-16 91.3 212 31.6
AUR62027385 Chenopodium quinoa HOM05D003963 ORTHO05D004558 2.9e-16 91.3 628 56.8
Peaxi162Scf00152g01123 Petunia axillaris HOM05D003963 ORTHO05D004558 3.8e-16 90.9 223 30.0
Gohir.A03G171700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 5.0e-16 90.5 217 34.1
AL8G41940 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 6.5e-16 90.1 208 36.1
EL10Ac8g19340 Beta vulgaris HOM05D003963 ORTHO05D004558 1.1e-15 89.4 630 56.7
A06p31280 Brassica napus HOM05D003963 ORTHO05D004558 1.4e-15 89.0 207 36.2
BraA06t26067Z Brassica rapa HOM05D003963 ORTHO05D004558 1.4e-15 89.0 207 36.2
Sp6g33710 Schrenkiella parvula HOM05D003963 ORTHO05D004558 1.4e-15 89.0 208 36.5
Oeu000233.2 Olea europaea HOM05D003963 ORTHO05D004558 2.5e-15 88.2 211 34.1
SalBow5G2159 Salvia bowleyana HOM05D003963 ORTHO05D004558 2.5e-15 88.2 220 32.7
Thhalv10013049m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 3.2e-15 87.8 228 34.6
Lsat_1_v5_gn_7_80140 Lactuca sativa HOM05D003963 ORTHO05D004558 3.2e-15 87.8 212 36.3
CARHR278520 Cardamine hirsuta HOM05D003963 ORTHO05D004558 4.2e-15 87.4 218 35.8
DCAR_029216 Daucus carota HOM05D003963 ORTHO05D004558 5.5e-15 87.0 654 56.7
Actinidia00250 Actinidia chinensis HOM05D003963 ORTHO05D004558 7.2e-15 86.7 221 35.3
C03p61710 Brassica napus HOM05D003963 ORTHO05D004558 7.9e-14 83.2 207 35.3
BolC3t18432H Brassica oleracea HOM05D003963 ORTHO05D004558 7.9e-14 83.2 207 35.3
Hund06704 Selenicereus undatus HOM05D003963 ORTHO05D004558 1.0e-13 82.8 205 34.6
ECA234G1426 Erigeron canadensis HOM05D003963 ORTHO05D004558 1.4e-13 82.4 221 34.4
CiPaw.05G038900 Carya illinoinensis HOM05D003963 ORTHO05D004558 1.8e-13 82.0 211 34.1
SGA_v2.0_scaffold45G17289 Striga asiatica HOM05D003963 ORTHO05D004558 2.3e-13 81.6 208 35.1
Rhsim11G0135400 Rhododendron simsii HOM05D003963 ORTHO05D004558 5.2e-13 80.5 220 35.5
AL6G20100 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 1.5e-12 79.0 210 36.7
A02p43350 Brassica napus HOM05D003963 ORTHO05D004558 1.5e-12 79.0 215 36.3
BraA02t09261Z Brassica rapa HOM05D003963 ORTHO05D004558 1.5e-12 79.0 215 36.3
AT5G09670 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 2.6e-12 78.2 206 34.0
ATR0564G216 Amborella trichopoda HOM05D003963 ORTHO05D004558 3.3e-12 77.8 226 31.4
C02p63440 Brassica napus HOM05D003963 ORTHO05D004558 3.3e-12 77.8 215 35.8
BolC2t12411H Brassica oleracea HOM05D003963 ORTHO05D004558 3.3e-12 77.8 215 35.8
unitig_62.g23623 Utricularia gibba HOM05D003963 ORTHO05D004558 7.4e-12 76.6 229 32.3
HPP92_027148 Vanilla planifolia HOM05D003963 ORTHO05D004558 2.2e-11 75.1 210 33.8
BcaB07g29747 Brassica carinata HOM05D003963 ORTHO05D004558 3.1e-10 71.2 208 31.2
Atru.chr10.2101 Acer truncatum HOM05D003963 ORTHO05D004558 4.1e-10 70.9 228 32.5
CARHR203720 Cardamine hirsuta HOM05D003963 ORTHO05D004558 7.0e-10 70.1 207 33.8
SEGI_28658 Sequoiadendron giganteum HOM05D003548 ORTHO05D004066 9.1e-10 69.7 127 36.2
CDE05G1767 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 3.5e-09 67.8 200 35.0
Lalb_Chr07g0189461 Lupinus albus HOM05D003963 ORTHO05D004558 1.3e-08 65.9 206 30.1
BraA09t36518Z Brassica rapa HOM05D003963 ORTHO05D004558 1.7e-08 65.5 209 31.1
Atru.chr10.2100 Acer truncatum HOM05D003963 ORTHO05D004558 2.9e-08 64.7 231 54.5
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 3.8e-08 64.3 209 32.5
A02p00100 Brassica napus HOM05D003963 ORTHO05D004558 3.8e-08 64.3 205 31.7
A09p08700 Brassica napus HOM05D003963 ORTHO05D004558 3.8e-08 64.3 209 30.6
Pp3c11_24820 Physcomitrium patens HOM05D031910 ORTHO05D004558 5.0e-08 63.9 164 31.7
BraA02t04995Z Brassica rapa HOM05D003963 ORTHO05D004558 6.5e-08 63.5 205 31.7
Pp3c7_8590 Physcomitrium patens HOM05D031910 ORTHO05D004558 6.5e-08 63.5 162 34.0
Actinidia34177 Actinidia chinensis HOM05D003548 ORTHO05D004066 1.5e-07 62.4 128 38.3
Mapoly0048s0020 Marchantia polymorpha HOM05D003963 ORTHO05D004558 1.5e-07 62.4 128 32.8
HPP92_016461 Vanilla planifolia HOM05D003963 ORTHO05D004558 2.5e-07 61.6 152 34.9
CDE02G0069 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 4.2e-07 60.8 106 42.5
Dinv35294 Davidia involucrata HOM05D003548 ORTHO05D004066 4.2e-07 60.8 127 39.4
Duzib068G0600 Durio zibethinus HOM05D003548 ORTHO05D004066 7.2e-07 60.1 154 34.4
Oeu003337.1 Olea europaea HOM05D003548 ORTHO05D004066 7.2e-07 60.1 206 29.1
Os06g0523100 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 7.2e-07 60.1 127 37.0
Rhsim03G0196900 Rhododendron simsii HOM05D003548 ORTHO05D004066 7.2e-07 60.1 126 37.3
Dinv37570 Davidia involucrata HOM05D003548 ORTHO05D004066 1.2e-06 59.3 126 35.7
Lj5C243T4 Lonicera japonica HOM05D003963 ORTHO05D004558 1.2e-06 59.3 130 39.2
Lj9P318T69 Lonicera japonica HOM05D003963 ORTHO05D004558 1.2e-06 59.3 129 40.3
Oeu050927.1 Olea europaea HOM05D003548 ORTHO05D004066 1.2e-06 59.3 139 32.4
Oeu050928.1 Olea europaea HOM05D003548 ORTHO05D004066 1.2e-06 59.3 139 32.4
CSS0042414 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 1.6e-06 58.9 128 35.2
Duzib084G0464 Durio zibethinus HOM05D003548 ORTHO05D004066 2.1e-06 58.5 127 34.6
BolC9t53891H Brassica oleracea HOM05D003963 ORTHO05D004558 3.6e-06 57.8 41 68.3
CSS0019271 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 3.6e-06 57.8 131 34.4
Haze_09989 Corylus avellana HOM05D003963 ORTHO05D004558 3.6e-06 57.8 153 32.0
SEGI_29670 Sequoiadendron giganteum HOM05D003963 ORTHO05D004558 3.6e-06 57.8 124 33.9
BcaC03g13269 Brassica carinata HOM05D003963 ORTHO05D004558 4.7e-06 57.4 110 37.3
BolC2t06362H Brassica oleracea HOM05D006324 ORTHO05D007463 4.7e-06 57.4 110 37.3
DCAR_020295 Daucus carota HOM05D003548 ORTHO05D004066 4.7e-06 57.4 164 31.7
unitig_46.g18812 Utricularia gibba HOM05D003548 ORTHO05D004066 4.7e-06 57.4 204 26.5
Nn1g01756 Nelumbo nucifera HOM05D003548 ORTHO05D004066 6.1e-06 57.0 60 46.7
BcaC04g23312 Brassica carinata HOM05D003963 ORTHO05D004558 8.0e-06 56.6 76 46.1
C09p09830 Brassica napus HOM05D003963 ORTHO05D004558 8.0e-06 56.6 76 46.1


User provided reference genes

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