Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 1.2e-144 516.5 269 100.0
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 2.8e-109 399.1 293 79.2
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 1.5e-67 260.4 162 87.7
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 6.7e-63 245.0 146 89.7
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 5.7e-62 241.9 160 82.5
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 1.1e-60 237.7 179 76.5
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 1.5e-54 217.2 148 77.0
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 3.5e-51 206.1 146 75.3
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 8.5e-50 201.4 143 75.5
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 1.1e-49 201.1 188 62.8
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 1.5e-49 200.7 158 68.4
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 1.9e-49 200.3 189 60.8
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 5.5e-49 198.7 193 60.6
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 5.5e-49 198.7 159 67.9
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 9.4e-49 198.0 143 72.7
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 1.6e-48 197.2 143 73.4
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 1.6e-48 197.2 143 72.7
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 2.1e-48 196.8 143 73.4
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 2.1e-48 196.8 143 73.4
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 2.1e-48 196.8 143 73.4
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 2.7e-48 196.4 141 72.3
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 2.7e-48 196.4 143 72.0
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 3.6e-48 196.1 143 72.0
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 3.6e-48 196.1 192 58.3
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 3.6e-48 196.1 143 72.0
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 4.7e-48 195.7 143 73.4
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 8.0e-48 194.9 170 64.1
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 1.0e-47 194.5 186 60.8
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 1.0e-47 194.5 186 60.8
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 1.4e-47 194.1 158 66.5
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 1.4e-47 194.1 158 66.5
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 1.8e-47 193.7 206 55.3
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 3.0e-47 193.0 142 71.1
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 3.0e-47 193.0 170 62.4
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 3.0e-47 193.0 161 66.5
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 4.0e-47 192.6 186 60.2
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 4.0e-47 192.6 151 68.9
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 6.7e-47 191.8 143 69.2
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 6.7e-47 191.8 143 69.9
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 6.7e-47 191.8 146 71.2
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 8.8e-47 191.4 180 60.6
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 8.8e-47 191.4 143 72.7
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 1.2e-46 191.0 170 61.2
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 1.2e-46 191.0 143 72.0
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 1.5e-46 190.7 175 61.1
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 2.0e-46 190.3 157 66.2
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 2.0e-46 190.3 146 69.2
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 3.3e-46 189.5 151 66.2
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 3.3e-46 189.5 143 70.6
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 3.3e-46 189.5 143 70.6
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 4.4e-46 189.1 147 69.4
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 4.4e-46 189.1 143 69.2
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 5.7e-46 188.7 147 68.0
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 5.7e-46 188.7 162 64.2
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 5.7e-46 188.7 199 57.3
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 5.7e-46 188.7 143 70.6
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 5.7e-46 188.7 172 60.5
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 5.7e-46 188.7 172 60.5
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 5.7e-46 188.7 159 65.4
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 7.5e-46 188.3 143 72.0
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 7.5e-46 188.3 143 69.9
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 7.5e-46 188.3 203 53.7
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 1.3e-45 187.6 170 60.6
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 1.3e-45 187.6 146 67.1
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 1.3e-45 187.6 143 69.2
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 1.3e-45 187.6 143 69.9
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 1.7e-45 187.2 143 69.9
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 2.8e-45 186.4 175 62.3
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 2.8e-45 186.4 175 62.3
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 3.7e-45 186.0 163 61.3
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 3.7e-45 186.0 163 61.3
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 3.7e-45 186.0 140 68.6
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 3.7e-45 186.0 162 63.0
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 3.7e-45 186.0 143 69.2
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 3.7e-45 186.0 143 70.6
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 4.8e-45 185.7 158 65.2
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 4.8e-45 185.7 146 67.1
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 4.8e-45 185.7 143 72.7
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 6.3e-45 185.3 172 60.5
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 8.2e-45 184.9 172 58.7
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 8.2e-45 184.9 155 63.9
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 1.1e-44 184.5 171 62.6
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 1.1e-44 184.5 145 67.6
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 1.4e-44 184.1 171 62.6
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 1.4e-44 184.1 175 60.0
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 1.4e-44 184.1 147 67.3
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 1.4e-44 184.1 146 69.9
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 1.8e-44 183.7 171 60.2
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 1.8e-44 183.7 146 65.8
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 2.4e-44 183.3 151 62.9
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 2.4e-44 183.3 144 70.8
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 2.4e-44 183.3 161 65.2
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 2.4e-44 183.3 203 56.7
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 3.1e-44 183.0 159 63.5
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 3.1e-44 183.0 143 67.1
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 3.1e-44 183.0 143 68.5
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 4.1e-44 182.6 156 62.8
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 4.1e-44 182.6 143 66.4
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 4.1e-44 182.6 171 60.2
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 4.1e-44 182.6 140 67.1
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 4.1e-44 182.6 174 59.2
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 5.3e-44 182.2 166 60.8
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 7.0e-44 181.8 191 56.5
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 7.0e-44 181.8 176 57.4
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 9.1e-44 181.4 176 62.5
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 9.1e-44 181.4 176 62.5
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 1.2e-43 181.0 146 65.1
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 1.2e-43 181.0 140 66.4
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 1.2e-43 181.0 175 60.6
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 1.6e-43 180.6 175 56.6
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 1.6e-43 180.6 173 59.0
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 1.6e-43 180.6 143 67.1
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 2.0e-43 180.3 171 57.3
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 2.0e-43 180.3 142 65.5
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 2.7e-43 179.9 143 67.1
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 3.5e-43 179.5 143 67.1
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 5.9e-43 178.7 143 67.8
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 5.9e-43 178.7 159 63.5
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 7.7e-43 178.3 143 68.5
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 7.7e-43 178.3 176 61.4
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 1.0e-42 177.9 204 51.0
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 1.0e-42 177.9 150 66.0
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 1.7e-42 177.2 151 65.6
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 3.8e-42 176.0 126 73.8
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 6.5e-42 175.3 192 57.3
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 6.5e-42 175.3 192 57.3
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 8.5e-42 174.9 142 64.1
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 1.5e-41 174.1 128 72.7
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 3.2e-41 172.9 181 53.6
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 5.5e-41 172.2 143 67.1
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 1.2e-40 171.0 126 72.2
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 1.2e-40 171.0 192 55.7
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 2.1e-40 170.2 143 62.9
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 1.0e-39 167.9 142 64.8
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 1.5e-38 164.1 160 59.4
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 3.7e-37 159.5 179 51.4
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 2.4e-36 156.8 142 62.7
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 3.5e-35 152.9 106 74.5
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 4.5e-35 152.5 143 54.5
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 2.3e-34 150.2 120 63.3
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 6.5e-34 148.7 92 77.2
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 5.5e-33 145.6 93 75.3
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 9.5e-33 144.8 92 80.4
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 1.2e-32 144.4 145 55.2
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 4.0e-31 139.4 98 73.5
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 6.8e-31 138.7 190 45.3
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 2.0e-30 137.1 107 70.1
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 1.3e-29 134.4 134 58.2
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 1.1e-28 131.3 81 79.0
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 2.4e-28 130.2 190 46.8
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 1.1e-25 121.3 93 73.1
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 9.5e-25 118.2 95 68.4
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 4.7e-24 115.9 123 53.7
Zm00001eb330160 Zea mays HOM05D000134 ORTHO05D000168 4.6e-19 99.4 56 87.5
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 2.5e-17 93.6 57 78.9
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 1.2e-16 91.3 65 70.8
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 1.6e-16 90.9 168 33.9
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 1.1e-12 78.2 124 37.9
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 4.1e-12 76.3 99 43.4
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 7.8e-11 72.0 68 57.4
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 4.3e-09 66.2 67 56.7
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 1.4e-07 61.2 66 53.0
ECA233G4675 Erigeron canadensis HOM05D004280 ORTHO05D003273 5.8e-06 55.8 32 75.0
Os07g0668900 Oryza sativa ssp. japonica HOM05D000134 ORTHO05D000168 5.8e-06 55.8 46 67.4


User provided reference genes

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