Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb068340 Zea mays HOM05D006388 ORTHO05D008026 5.9e-261 903.7 457 100.0
Os10g0489800 Oryza sativa ssp. japonica HOM05D006388 ORTHO05D008026 1.1e-113 414.5 314 71.0
HPP92_007318 Vanilla planifolia HOM05D006388 ORTHO05D008026 3.4e-91 339.7 423 47.5
FAN18G2055 Fragaria x ananassa HOM05D006388 ORTHO05D008026 1.5e-78 297.7 452 43.1
FvH4_5g18560 Fragaria vesca HOM05D006388 ORTHO05D008026 5.6e-78 295.8 452 42.9
RcHm_v2.0_Chr7g0176951 Rosa chinensis HOM05D006388 ORTHO05D008026 1.6e-77 294.3 458 43.4
FAN08G3112 Fragaria x ananassa HOM05D006388 ORTHO05D008026 1.1e-76 291.6 451 42.1
TAR622G0711 Trochodendron aralioides HOM05D006388 ORTHO05D008026 4.0e-76 289.7 459 42.7
MD14G1246700 Malus domestica HOM05D006388 ORTHO05D008026 2.0e-75 287.3 507 40.8
SGA_v2.0_scaffold25G10731 Striga asiatica HOM05D006388 ORTHO05D008026 2.0e-75 287.3 476 41.8
ClCG10G003610 Citrullus lanatus HOM05D006388 ORTHO05D008026 2.6e-75 287.0 456 40.4
DCAR_014753 Daucus carota HOM05D001996 ORTHO05D002072 2.6e-75 287.0 404 45.0
Aqoxy3G04328 Aquilegia oxysepala HOM05D006388 ORTHO05D008026 4.9e-74 282.7 454 42.3
Oeu063709.3 Olea europaea HOM05D006388 ORTHO05D008026 1.4e-73 281.2 457 39.6
MELO3C014032.2 Cucumis melo HOM05D006388 ORTHO05D008026 1.9e-73 280.8 457 38.9
Nitab4.5_0007717g0060 Nicotiana tabacum HOM05D006388 ORTHO05D008026 2.4e-73 280.4 444 41.2
SalBow5G5586 Salvia bowleyana HOM05D006388 ORTHO05D008026 2.4e-73 280.4 472 41.1
CDE04G0152 Ceratophyllum demersum HOM05D006388 ORTHO05D008026 3.2e-73 280.0 463 40.2
Nitab4.5_0001495g0050 Nicotiana tabacum HOM05D006388 ORTHO05D008026 3.2e-73 280.0 448 40.8
MBI03_g13439_MAGBIO Magnolia biondii HOM05D006388 ORTHO05D008026 5.5e-73 279.3 459 42.0
Manes.02G226400 Manihot esculenta HOM05D006388 ORTHO05D008026 5.5e-73 279.3 442 42.3
Sopen03g029690 Solanum pennellii HOM05D006388 ORTHO05D008026 5.5e-73 279.3 457 39.4
Dinv03508 Davidia involucrata HOM05D006388 ORTHO05D008026 9.3e-73 278.5 474 39.5
Prupe.5G245000 Prunus persica HOM05D006388 ORTHO05D008026 1.2e-72 278.1 491 40.1
Cfa017806 Carpinus fangiana HOM05D006388 ORTHO05D008026 1.6e-72 277.7 464 41.6
CiPaw.15G107500 Carya illinoinensis HOM05D006388 ORTHO05D008026 1.6e-72 277.7 464 40.5
FAN13G2679 Fragaria x ananassa HOM05D006388 ORTHO05D008026 2.1e-72 277.3 452 41.4
PGSC0003DMG400015280 Solanum tuberosum HOM05D006388 ORTHO05D008026 2.1e-72 277.3 452 38.5
Eucgr.K02329 Eucalyptus grandis HOM05D006388 ORTHO05D008026 2.7e-72 276.9 463 41.0
Lj5A168G91 Lonicera japonica HOM05D006388 ORTHO05D008026 6.0e-72 275.8 504 38.3
Cpa.g.sc168.3 Carica papaya HOM05D006388 ORTHO05D008026 7.9e-72 275.4 433 43.0
COL.COLO4_30052 Corchorus olitorius HOM05D006388 ORTHO05D008026 1.3e-71 274.6 457 41.1
CsaV3_3G003610 Cucumis sativus L. HOM05D006388 ORTHO05D008026 1.8e-71 274.2 457 38.5
CAN.G861.30 Capsicum annuum HOM05D006388 ORTHO05D008026 2.3e-71 273.9 455 39.1
Potri.004G067200 Populus trichocarpa HOM05D006388 ORTHO05D008026 3.0e-71 273.5 472 40.5
Phvul.004G137100 Phaseolus vulgaris HOM05D006388 ORTHO05D008026 8.7e-71 271.9 457 40.5
PSO063G3611 Papaver somniferum HOM05D006388 ORTHO05D008026 1.1e-70 271.6 469 39.2
ATR0124G024 Amborella trichopoda HOM05D006388 ORTHO05D008026 1.5e-70 271.2 482 38.0
Nn4g26682 Nelumbo nucifera HOM05D006388 ORTHO05D008026 1.9e-70 270.8 439 40.8
Psat1g118840 Pisum sativum HOM05D006388 ORTHO05D008026 3.3e-70 270.0 500 38.8
Sed0000986 Sechium edule HOM05D006388 ORTHO05D008026 3.3e-70 270.0 452 38.7
Atru.chr6.990 Acer truncatum HOM05D006388 ORTHO05D008026 4.3e-70 269.6 451 41.0
ECA236G2607 Erigeron canadensis HOM05D006388 ORTHO05D008026 9.6e-70 268.5 449 40.3
Sp5g28310 Schrenkiella parvula HOM05D006388 ORTHO05D008026 9.6e-70 268.5 438 40.0
Gohir.D08G245800 Gossypium hirsutum HOM05D006388 ORTHO05D008026 4.8e-69 266.2 466 39.9
CANSAT80G2370 Cannabis sativa HOM05D006388 ORTHO05D008026 6.2e-69 265.8 444 40.5
Gorai.004G262300 Gossypium raimondii HOM05D006388 ORTHO05D008026 6.2e-69 265.8 466 40.1
HanXRQChr05g0141681 Helianthus annuus HOM05D006388 ORTHO05D008026 6.2e-69 265.8 442 39.8
arahy.Tifrunner.gnm1.ann1.586MWM Arachis hypogaea HOM05D006388 ORTHO05D008026 1.4e-68 264.6 497 38.4
Medtr6g068920 Medicago truncatula HOM05D006388 ORTHO05D008026 1.4e-68 264.6 507 37.9
TPR.G31361 Trifolium pratense HOM05D006388 ORTHO05D008026 1.8e-68 264.2 501 38.3
Gohir.A08G225400 Gossypium hirsutum HOM05D006388 ORTHO05D008026 2.4e-68 263.8 466 39.7
CARHR066430 Cardamine hirsuta HOM05D006388 ORTHO05D008026 3.1e-68 263.5 441 40.4
Lsat_1_v5_gn_8_64640 Lactuca sativa HOM05D006388 ORTHO05D008026 3.1e-68 263.5 446 40.1
arahy.Tifrunner.gnm1.ann1.V0741V Arachis hypogaea HOM05D006388 ORTHO05D008026 4.0e-68 263.1 497 38.2
Thhalv10018586m.g Eutrema salsugineum HOM05D006388 ORTHO05D008026 4.0e-68 263.1 445 40.0
Aa31LG4G3650 Aethionema arabicum HOM05D006388 ORTHO05D008026 5.3e-68 262.7 440 40.7
BolC2t09150H Brassica oleracea HOM05D006388 ORTHO05D008026 1.2e-67 261.5 432 40.0
VMungo0464G0944 Vigna mungo HOM05D006388 ORTHO05D008026 1.2e-67 261.5 503 36.8
Rhsim08G0125300 Rhododendron simsii HOM05D006388 ORTHO05D008026 1.5e-67 261.2 533 36.4
PGR044G0861 Punica granatum HOM05D006388 ORTHO05D008026 2.0e-67 260.8 459 40.1
TWI15G1133 Tripterygium wilfordii HOM05D006388 ORTHO05D008026 3.4e-67 260.0 450 39.1
Cc00_g12620 Coffea canephora HOM05D006388 ORTHO05D008026 4.5e-67 259.6 473 39.3
Lj2g0005711 Lotus japonicus HOM05D006388 ORTHO05D008026 4.5e-67 259.6 498 39.0
ClCG00G000350 Citrullus lanatus HOM05D006388 ORTHO05D008026 7.6e-67 258.8 467 37.5
Sabra04G0045000 Salix brachista HOM05D006388 ORTHO05D008026 1.0e-66 258.5 499 38.1
C02p31040 Brassica napus HOM05D006388 ORTHO05D008026 1.3e-66 258.1 438 40.0
BraA02t06912Z Brassica rapa HOM05D006388 ORTHO05D008026 2.2e-66 257.3 435 39.8
AT1G73380 Arabidopsis thaliana HOM05D006388 ORTHO05D008026 8.4e-66 255.4 438 39.3
Thecc.05G197200 Theobroma cacao HOM05D006388 ORTHO05D008026 8.4e-66 255.4 471 39.1
Solyc03g019930.4 Solanum lycopersicum HOM05D006388 ORTHO05D008026 1.9e-65 254.2 425 37.2
A02p18710 Brassica napus HOM05D006388 ORTHO05D008026 2.5e-65 253.8 436 39.2
Duzib128G0602 Durio zibethinus HOM05D006388 ORTHO05D008026 3.2e-65 253.4 426 40.4
Carub.0002s2012 Capsella rubella HOM05D006388 ORTHO05D008026 1.6e-64 251.1 436 40.1
AL2G33160 Arabidopsis lyrata HOM05D006388 ORTHO05D008026 3.5e-64 250.0 443 39.5
Sc10g0008630 Simmondsia chinensis HOM05D006388 ORTHO05D008026 4.6e-64 249.6 453 39.3
THA.LOC104813931 Tarenaya hassleriana HOM05D006388 ORTHO05D008026 4.6e-64 249.6 434 39.9
Ah.14g085810 Amaranthus hybridus HOM05D006388 ORTHO05D008026 5.1e-63 246.1 438 39.3
GSVIVG01024248001 Vitis vinifera HOM05D006388 ORTHO05D008026 2.5e-62 243.8 170 70.6
Haze_18407 Corylus avellana HOM05D006388 ORTHO05D008026 3.3e-62 243.4 461 38.8
TPR.G3132 Trifolium pratense HOM05D006388 ORTHO05D008026 5.7e-62 242.7 400 42.0
Lalb_Chr03g0034281 Lupinus albus HOM05D006388 ORTHO05D008026 1.3e-61 241.5 469 37.1
EL10Ac8g19473 Beta vulgaris HOM05D006388 ORTHO05D008026 2.8e-61 240.4 472 37.5
Glyma.16G210900 Glycine max HOM05D006388 ORTHO05D008026 2.8e-61 240.4 416 39.2
AUR62040788 Chenopodium quinoa HOM05D006388 ORTHO05D008026 1.4e-60 238.0 367 42.0
Peaxi162Scf00171g00011 Petunia axillaris HOM05D006388 ORTHO05D008026 2.4e-60 237.3 191 60.7
Ca_25279_v3 Cicer arietinum L. HOM05D006388 ORTHO05D008026 4.1e-60 236.5 481 36.2
unitig_749.g14324 Utricularia gibba HOM05D006388 ORTHO05D008026 5.3e-60 236.1 462 38.3
Zm00001eb135490 Zea mays HOM05D006388 ORTHO05D008026 5.5e-57 226.1 224 62.1
Migut.O00278 Erythranthe guttata HOM05D006388 ORTHO05D008026 6.1e-56 222.6 183 63.4
Glyma.09G161700 Glycine max HOM05D006388 ORTHO05D008026 7.9e-56 222.2 173 63.6
Duzib128G0966 Durio zibethinus HOM05D006388 ORTHO05D008026 4.3e-54 216.5 200 57.0
TPR.G27930 Trifolium pratense HOM05D006388 ORTHO05D008026 7.7e-51 205.7 168 63.7
SEGI_28863 Sequoiadendron giganteum HOM05D006388 ORTHO05D008026 1.0e-50 205.3 457 35.0
CSS0002556 Camellia sinensis var. sinensis HOM05D006388 ORTHO05D008026 1.4e-41 174.9 120 71.7
SMO169G0166 Selaginella moellendorffii HOM05D006388 ORTHO05D008026 1.9e-41 174.5 409 35.9
vmacro17751 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 3.6e-40 170.2 371 36.4
Mapoly0114s0003 Marchantia polymorpha HOM05D006388 ORTHO05D008026 1.5e-38 164.9 172 47.7
ClCG00G000360 Citrullus lanatus HOM05D006388 ORTHO05D008026 3.3e-38 163.7 120 65.8
Pp3c1_7520 Physcomitrium patens HOM05D006388 ORTHO05D008026 6.3e-37 159.5 366 32.2
QL10p033727 Quercus lobata HOM05D006388 ORTHO05D008026 1.8e-36 157.9 394 34.0
Ciclev10020647m.g Citrus clementina HOM05D006388 ORTHO05D008026 2.4e-36 157.5 378 35.7
AagrBONN_evm.TU.Sc2ySwM_344.3994 Anthoceros agrestis HOM05D006388 ORTHO05D008026 1.2e-35 155.2 169 47.9
Actinidia34678 Actinidia chinensis HOM05D006388 ORTHO05D008026 2.0e-35 154.5 339 35.4
Duzib128G1156 Durio zibethinus HOM05D006388 ORTHO05D008026 5.9e-35 152.9 161 51.6
Hund22363 Selenicereus undatus HOM05D006388 ORTHO05D008026 6.5e-34 149.4 405 31.4
CBR_g36351 Chara braunii HOM05D006388 ORTHO05D008026 4.4e-30 136.7 169 40.8
vmacro17752 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 3.2e-25 120.6 67 82.1
ClCG00G006010 Citrullus lanatus HOM05D006388 ORTHO05D008026 3.6e-24 117.1 333 30.3
TPR.G31360 Trifolium pratense HOM05D006388 ORTHO05D008026 3.4e-22 110.5 67 77.6
Zm00001eb050690 Zea mays HOM05D006388 ORTHO05D008026 9.1e-20 102.4 53 92.5
TPR.G16379 Trifolium pratense HOM05D006388 ORTHO05D008026 1.9e-17 94.7 89 55.1
Actinidia34679 Actinidia chinensis HOM05D006388 ORTHO05D008026 8.9e-15 85.9 45 84.4
Gohir.A08G079000 Gossypium hirsutum HOM05D006388 ORTHO05D008026 9.8e-14 82.4 285 30.9
Hma1.2p1_0800F.1_g220210 Hydrangea macrophylla HOM05D006388 ORTHO05D008026 7.0e-12 76.3 54 68.5
AUR62038569 Chenopodium quinoa HOM05D006388 ORTHO05D008026 8.6e-10 69.3 238 29.0
Cre02.g083400 Chlamydomonas reinhardtii HOM05D006388 ORTHO05D008026 1.4e-07 62.0 172 31.4
TPR.G46 Trifolium pratense HOM05D006388 ORTHO05D008026 1.8e-07 61.6 47 61.7


User provided reference genes

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