Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb068140 Zea mays HOM05D041201 ORTHO05D037855 8.1e-263 909.8 449 100.0
Zm00001eb171130 Zea mays HOM05D041201 ORTHO05D037855 9.2e-158 560.8 452 65.7
Zm00001eb388150 Zea mays HOM05D041201 ORTHO05D037855 1.1e-126 457.6 441 58.3
Actinidia15471 Actinidia chinensis HOM05D000151 ORTHO05D000074 1.5e-19 101.7 463 26.6
CSS0022996 Camellia sinensis var. sinensis HOM05D000151 ORTHO05D000074 3.4e-19 100.5 458 26.0
Manes.18G008400 Manihot esculenta HOM05D000151 ORTHO05D000074 1.7e-18 98.2 461 25.4
TWI56G0068 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 1.1e-17 95.5 424 25.0
MD15G1005500 Malus domestica HOM05D000151 ORTHO05D000074 1.9e-17 94.7 465 25.6
MD08G1006100 Malus domestica HOM05D000151 ORTHO05D000074 7.1e-17 92.8 465 25.8
FvH4_4g26320 Fragaria vesca HOM05D000151 ORTHO05D000074 2.1e-16 91.3 408 26.0
RcHm_v2.0_Chr4g0395201 Rosa chinensis HOM05D000151 ORTHO05D000074 2.1e-16 91.3 474 23.8
Prupe.1G358000 Prunus persica HOM05D000151 ORTHO05D000074 4.6e-16 90.1 457 24.1
Dinv40803 Davidia involucrata HOM05D000151 ORTHO05D000074 1.3e-15 88.6 406 25.4
Oeu030066.1 Olea europaea HOM05D000151 ORTHO05D000074 1.3e-15 88.6 442 23.3
TAR628G1200 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.3e-15 88.6 415 25.1
Dinv39566 Davidia involucrata HOM05D000151 ORTHO05D000074 3.0e-15 87.4 416 27.2
ClCG05G015310 Citrullus lanatus HOM05D000151 ORTHO05D000074 8.7e-15 85.9 411 25.3
Nn6g31858 Nelumbo nucifera HOM05D000151 ORTHO05D000074 1.1e-14 85.5 461 23.4
Glyma.04G019900 Glycine max HOM05D000151 ORTHO05D000074 2.5e-14 84.3 397 25.9
Medtr3g114970 Medicago truncatula HOM05D000151 ORTHO05D000074 2.5e-14 84.3 426 24.9
Cfa014025 Carpinus fangiana HOM05D000151 ORTHO05D000074 4.3e-14 83.6 442 26.0
FAN12G0486 Fragaria x ananassa HOM05D000151 ORTHO05D000074 4.3e-14 83.6 200 31.5
Gorai.010G001100 Gossypium raimondii HOM05D000151 ORTHO05D000074 5.6e-14 83.2 449 23.8
Manes.07G048850 Manihot esculenta HOM05D000151 ORTHO05D000074 5.6e-14 83.2 409 23.7
Thecc.01G383500 Theobroma cacao HOM05D000151 ORTHO05D000074 5.6e-14 83.2 453 22.5
QL02p013380 Quercus lobata HOM05D000151 ORTHO05D000074 7.4e-14 82.8 424 26.4
MD13G1075200 Malus domestica HOM05D000151 ORTHO05D000074 9.6e-14 82.4 423 27.0
arahy.Tifrunner.gnm1.ann1.PYC0TU Arachis hypogaea HOM05D000151 ORTHO05D000074 3.7e-13 80.5 424 23.8
Manes.07G048800 Manihot esculenta HOM05D000151 ORTHO05D000074 4.8e-13 80.1 389 22.6
Manes.07G051600 Manihot esculenta HOM05D000151 ORTHO05D000074 4.8e-13 80.1 428 22.7
Aqoxy4G02957 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 6.2e-13 79.7 417 24.0
Rhsim06G0010000 Rhododendron simsii HOM05D000151 ORTHO05D000074 8.1e-13 79.3 446 24.0
Thecc.01G383700 Theobroma cacao HOM05D000151 ORTHO05D000074 8.1e-13 79.3 453 22.5
CiPaw.08G069900 Carya illinoinensis HOM05D000151 ORTHO05D000074 1.1e-12 79.0 474 24.7
TAR626G1895 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.1e-12 79.0 449 23.4
Actinidia28355 Actinidia chinensis HOM05D000151 ORTHO05D000074 1.4e-12 78.6 298 25.8
TWI38G2055 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 1.4e-12 78.6 404 23.0
MELO3C017000.2 Cucumis melo HOM05D000151 ORTHO05D000074 1.8e-12 78.2 264 28.0
Prupe.1G273900 Prunus persica HOM05D000151 ORTHO05D000074 2.4e-12 77.8 469 26.2
COL.COLO4_12589 Corchorus olitorius HOM05D000151 ORTHO05D000074 3.1e-12 77.4 446 24.9
Cc10_g00920 Coffea canephora HOM05D000151 ORTHO05D000074 5.3e-12 76.6 466 23.6
Dinv38968 Davidia involucrata HOM05D000151 ORTHO05D000074 5.3e-12 76.6 391 24.0
Lj2P549T12 Lonicera japonica HOM05D000151 ORTHO05D000074 5.3e-12 76.6 320 25.3
CsaV3_4G037010 Cucumis sativus L. HOM05D000151 ORTHO05D000074 6.9e-12 76.3 264 28.0
Thecc.08G054100 Theobroma cacao HOM05D000151 ORTHO05D000074 6.9e-12 76.3 459 24.2
CiPaw.08G070000 Carya illinoinensis HOM05D000151 ORTHO05D000074 9.0e-12 75.9 461 23.9
Dinv38940 Davidia involucrata HOM05D000151 ORTHO05D000074 9.0e-12 75.9 386 23.1
Duzib084G1040 Durio zibethinus HOM05D000151 ORTHO05D000074 1.2e-11 75.5 304 26.3
Os06g0707300 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 1.2e-11 75.5 441 25.6
Aqoxy6G00559 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 2.0e-11 74.7 435 23.0
A03p14220 Brassica napus HOM05D009259 ORTHO05D000074 2.0e-11 74.7 397 23.9
Manes.05G141800 Manihot esculenta HOM05D000151 ORTHO05D000074 2.0e-11 74.7 445 24.0
Cc05_g12280 Coffea canephora HOM05D000151 ORTHO05D000074 3.4e-11 73.9 427 26.0
FvH4_7g10560 Fragaria vesca HOM05D000151 ORTHO05D000074 3.4e-11 73.9 137 29.9
Os11g0582700 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 4.5e-11 73.6 347 23.3
EL10Ac4g08311 Beta vulgaris HOM05D000151 ORTHO05D000074 5.8e-11 73.2 441 23.4
BraA03t10722Z Brassica rapa HOM05D009259 ORTHO05D000074 5.8e-11 73.2 399 24.6
PGSC0003DMG400027899 Solanum tuberosum HOM05D000151 ORTHO05D000074 7.6e-11 72.8 186 27.4
Dinv38965 Davidia involucrata HOM05D000151 ORTHO05D000074 1.0e-10 72.4 391 23.8
Haze_17578 Corylus avellana HOM05D000151 ORTHO05D000074 1.3e-10 72.0 409 22.7
Sopen03g032220 Solanum pennellii HOM05D000151 ORTHO05D000074 1.7e-10 71.6 446 23.1
PGSC0003DMG400018078 Solanum tuberosum HOM05D000151 ORTHO05D000074 2.2e-10 71.2 446 22.9
Aqoxy7G02698 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 2.9e-10 70.9 441 21.8
Cc05_g12310 Coffea canephora HOM05D000151 ORTHO05D000074 2.9e-10 70.9 433 25.9
Oeu017909.1 Olea europaea HOM05D000151 ORTHO05D000074 2.9e-10 70.9 422 24.6
Cc05_g12260 Coffea canephora HOM05D000151 ORTHO05D000074 3.8e-10 70.5 433 25.6
Eucgr.F03527 Eucalyptus grandis HOM05D000151 ORTHO05D000074 4.9e-10 70.1 412 24.5
Prupe.1G050400 Prunus persica HOM05D000151 ORTHO05D000074 4.9e-10 70.1 410 21.7
TAR636G0813 Trochodendron aralioides HOM05D000151 ORTHO05D000074 4.9e-10 70.1 379 25.1
Zm00001eb272730 Zea mays HOM05D000151 ORTHO05D000074 4.9e-10 70.1 448 24.6
Dinv38967 Davidia involucrata HOM05D000151 ORTHO05D000074 6.5e-10 69.7 392 23.2
PGSC0003DMG400018077 Solanum tuberosum HOM05D000151 ORTHO05D000074 8.4e-10 69.3 444 23.2
Dinv38966 Davidia involucrata HOM05D000151 ORTHO05D000074 1.1e-09 68.9 284 25.4
SGA_v2.0_scaffold351G49652 Striga asiatica HOM05D000151 ORTHO05D000074 1.1e-09 68.9 459 23.1
Dinv01675 Davidia involucrata HOM05D000151 ORTHO05D000074 1.4e-09 68.6 306 23.9
QL02p017356 Quercus lobata HOM05D000151 ORTHO05D000074 1.9e-09 68.2 447 22.4
RcHm_v2.0_Chr1g0339581 Rosa chinensis HOM05D000151 ORTHO05D000074 1.9e-09 68.2 149 29.5
Potri.004G134900 Populus trichocarpa HOM05D000151 ORTHO05D000074 4.2e-09 67.0 446 20.9
TWI56G0115 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 4.2e-09 67.0 430 24.2
Gohir.A10G237000 Gossypium hirsutum HOM05D000151 ORTHO05D000074 5.5e-09 66.6 377 23.9
Os03g0708200 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 5.5e-09 66.6 440 23.0
Aqoxy5G01074 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 7.1e-09 66.2 380 21.3
PGSC0003DMG400018156 Solanum tuberosum HOM05D000151 ORTHO05D000074 7.1e-09 66.2 439 21.0
HanXRQChr16g0527521 Helianthus annuus HOM05D000151 ORTHO05D000074 9.3e-09 65.9 399 22.6
MD13G1223500 Malus domestica HOM05D000151 ORTHO05D000074 9.3e-09 65.9 397 22.4
Os12g0607800 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 9.3e-09 65.9 163 30.7
Zm00001eb049550 Zea mays HOM05D000151 ORTHO05D000074 9.3e-09 65.9 464 22.0
Dinv07015 Davidia involucrata HOM05D000151 ORTHO05D000074 1.6e-08 65.1 283 22.3
Dinv37646 Davidia involucrata HOM05D000151 ORTHO05D000074 1.6e-08 65.1 434 22.6
PGSC0003DMG400001762 Solanum tuberosum HOM05D000151 ORTHO05D000074 1.6e-08 65.1 185 24.9
RcHm_v2.0_Chr4g0430571 Rosa chinensis HOM05D014495 ORTHO05D014615 2.1e-08 64.7 142 29.6
Lj2C483T3 Lonicera japonica HOM05D000151 ORTHO05D000074 4.6e-08 63.5 319 24.5
TPR.G38190 Trifolium pratense HOM05D000151 ORTHO05D000074 4.6e-08 63.5 245 24.5
Eucgr.F03344 Eucalyptus grandis HOM05D000151 ORTHO05D000074 6.0e-08 63.2 214 27.1
Cfa018500 Carpinus fangiana HOM05D000151 ORTHO05D000074 7.9e-08 62.8 255 23.1
HanXRQChr17g0566191 Helianthus annuus HOM05D000151 ORTHO05D000074 1.0e-07 62.4 246 29.7
Hma1.2p1_0311F.1_g121220 Hydrangea macrophylla HOM05D000151 ORTHO05D000074 1.0e-07 62.4 413 22.8
Hma1.2p1_0570F.1_g180420 Hydrangea macrophylla HOM05D000151 ORTHO05D000074 1.0e-07 62.4 356 24.7
Lj2C464T4 Lonicera japonica HOM05D000151 ORTHO05D000074 1.0e-07 62.4 407 22.4
EL10Ac1g02048 Beta vulgaris HOM05D000151 ORTHO05D000074 1.3e-07 62.0 353 24.1
Os11g0593500 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 1.3e-07 62.0 152 30.9
Peaxi162Scf01221g00008 Petunia axillaris HOM05D000151 ORTHO05D000074 1.3e-07 62.0 333 22.2
Aqoxy5G01063 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 1.8e-07 61.6 257 25.3
Lj2P442T32 Lonicera japonica HOM05D000151 ORTHO05D000074 1.8e-07 61.6 305 23.3
SGA_v2.0_scaffold405G51033 Striga asiatica HOM05D007685 ORTHO05D009136 1.8e-07 61.6 380 22.9
SGA_v2.0_scaffold405G51038 Striga asiatica HOM05D007685 ORTHO05D009136 1.8e-07 61.6 380 22.9
FvH4_4g05011 Fragaria vesca HOM05D000151 ORTHO05D000074 2.3e-07 61.2 170 27.6
SGA_v2.0_scaffold1514G53974 Striga asiatica HOM05D007685 ORTHO05D009136 2.3e-07 61.2 380 23.2
SGA_v2.0_scaffold218G42504 Striga asiatica HOM05D007685 ORTHO05D009136 2.3e-07 61.2 381 21.5
CiPaw.06G046500 Carya illinoinensis HOM05D000151 ORTHO05D000074 3.0e-07 60.8 366 23.2
FvH4_3g43771 Fragaria vesca HOM05D022879 ORTHO05D000074 3.0e-07 60.8 163 28.8
Manes.07G048900 Manihot esculenta HOM05D000151 ORTHO05D000074 3.0e-07 60.8 214 28.5
Peaxi162Scf00078g00539 Petunia axillaris HOM05D000151 ORTHO05D000074 3.0e-07 60.8 259 23.9
Peaxi162Scf00078g00540 Petunia axillaris HOM05D000151 ORTHO05D000074 3.0e-07 60.8 259 23.9
Lj2C486T7 Lonicera japonica HOM05D000151 ORTHO05D000074 3.9e-07 60.5 444 21.6
Aqoxy5G01582 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 6.7e-07 59.7 350 20.9
Dinv38964 Davidia involucrata HOM05D000151 ORTHO05D000074 6.7e-07 59.7 237 27.4
TAR626G0819 Trochodendron aralioides HOM05D000151 ORTHO05D000074 6.7e-07 59.7 268 26.5
CiPaw.06G077200 Carya illinoinensis HOM05D000151 ORTHO05D000074 1.1e-06 58.9 449 23.2
Prupe.1G227500 Prunus persica HOM05D000151 ORTHO05D000074 1.1e-06 58.9 261 25.7
Aqoxy2G03785 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 1.5e-06 58.5 243 24.3
FAN11G1382 Fragaria x ananassa HOM05D022879 ORTHO05D000074 1.5e-06 58.5 163 28.2
Lj1P1142T22 Lonicera japonica HOM05D000151 ORTHO05D000074 1.9e-06 58.2 364 21.4
Psat0s4081g0080 Pisum sativum HOM05D000151 ORTHO05D000074 1.9e-06 58.2 192 27.6
EL10Ac3g05443 Beta vulgaris HOM05D000151 ORTHO05D000074 2.5e-06 57.8 477 21.4
Aqoxy5G02614 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 3.3e-06 57.4 243 24.3
FAN12G3589 Fragaria x ananassa HOM05D000151 ORTHO05D000074 3.3e-06 57.4 143 26.6
Aqoxy5G01069 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 4.3e-06 57.0 241 23.7
Lj2C484T9 Lonicera japonica HOM05D000151 ORTHO05D000074 4.3e-06 57.0 374 21.7
Lj3g0002558 Lotus japonicus HOM05D000151 ORTHO05D000074 5.7e-06 56.6 352 23.3


User provided reference genes

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