Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb068130 Zea mays HOM05D004897 ORTHO05D005928 6.1e-232 807.4 483 100.0
Os04g0652500 Oryza sativa ssp. japonica HOM05D004897 ORTHO05D005928 2.0e-129 466.8 478 65.9
CDE05G2998 Ceratophyllum demersum HOM05D004897 ORTHO05D005928 1.5e-76 291.2 302 53.3
HPP92_013368 Vanilla planifolia HOM05D004897 ORTHO05D005928 1.5e-76 291.2 587 42.1
MBI12_g30398_MAGBIO Magnolia biondii HOM05D004897 ORTHO05D005928 7.3e-76 288.9 365 51.5
TAR622G0961 Trochodendron aralioides HOM05D004897 ORTHO05D005928 2.8e-75 287.0 304 52.3
Nn4g24194 Nelumbo nucifera HOM05D004897 ORTHO05D005928 2.3e-74 283.9 300 52.3
Cfa019677 Carpinus fangiana HOM05D004897 ORTHO05D005928 4.0e-74 283.1 296 54.4
PSO017G1741 Papaver somniferum HOM05D004897 ORTHO05D005928 5.2e-74 282.7 300 54.0
QL10p028331 Quercus lobata HOM05D004897 ORTHO05D005928 8.9e-74 282.0 302 52.6
QL10p028216 Quercus lobata HOM05D004897 ORTHO05D005928 1.2e-73 281.6 302 52.6
Lj9C421G3 Lonicera japonica HOM05D004897 ORTHO05D005928 2.6e-73 280.4 296 55.4
CSS0030961 Camellia sinensis var. sinensis HOM05D004897 ORTHO05D005928 3.4e-73 280.0 296 53.7
CiPaw.15G140900 Carya illinoinensis HOM05D004897 ORTHO05D005928 5.8e-73 279.3 296 53.4
PSO478G0546 Papaver somniferum HOM05D004897 ORTHO05D005928 7.5e-73 278.9 300 53.3
Eucgr.B00942 Eucalyptus grandis HOM05D004897 ORTHO05D005928 1.4e-71 274.6 299 51.5
MD06G1230800 Malus domestica HOM05D004897 ORTHO05D005928 2.4e-71 273.9 296 53.4
MD14G1235400 Malus domestica HOM05D004897 ORTHO05D005928 4.1e-71 273.1 310 51.6
Hund02326 Selenicereus undatus HOM05D004897 ORTHO05D005928 9.2e-71 271.9 299 53.2
DCAR_014009 Daucus carota HOM05D004897 ORTHO05D005928 1.2e-70 271.6 304 51.6
VMungo0251G1788 Vigna mungo HOM05D004897 ORTHO05D005928 1.6e-70 271.2 300 52.0
Thecc.03G053700 Theobroma cacao HOM05D004897 ORTHO05D005928 2.7e-70 270.4 296 53.7
Gohir.A12G268700 Gossypium hirsutum HOM05D004897 ORTHO05D005928 3.5e-70 270.0 296 52.7
Actinidia18901 Actinidia chinensis HOM05D004897 ORTHO05D005928 6.0e-70 269.2 296 51.0
Potri.015G039800 Populus trichocarpa HOM05D004897 ORTHO05D005928 1.3e-69 268.1 296 52.4
Sabra15G0057300 Salix brachista HOM05D004897 ORTHO05D005928 1.3e-69 268.1 296 52.0
Prupe.5G232100 Prunus persica HOM05D004897 ORTHO05D005928 1.7e-69 267.7 292 53.4
CAN.G1129.49 Capsicum annuum HOM05D004897 ORTHO05D005928 2.3e-69 267.3 298 51.7
Gohir.D12G269100 Gossypium hirsutum HOM05D004897 ORTHO05D005928 3.9e-69 266.5 296 52.0
Gorai.008G289400 Gossypium raimondii HOM05D004897 ORTHO05D005928 3.9e-69 266.5 296 52.0
Sc10g0009320 Simmondsia chinensis HOM05D004897 ORTHO05D005928 3.9e-69 266.5 299 51.5
Hma1.2p1_0669F.1_g200180 Hydrangea macrophylla HOM05D004897 ORTHO05D005928 1.1e-68 265.0 295 50.8
RcHm_v2.0_Chr7g0178571 Rosa chinensis HOM05D004897 ORTHO05D005928 1.9e-68 264.2 296 51.4
Ciclev10007731m.g Citrus clementina HOM05D004897 ORTHO05D005928 3.3e-68 263.5 296 52.0
PGSC0003DMG400005743 Solanum tuberosum HOM05D004897 ORTHO05D005928 3.3e-68 263.5 298 51.0
TWI60G0918 Tripterygium wilfordii HOM05D004897 ORTHO05D005928 4.3e-68 263.1 296 51.7
Migut.D01558 Erythranthe guttata HOM05D004897 ORTHO05D005928 5.6e-68 262.7 301 50.5
THA.LOC104812165 Tarenaya hassleriana HOM05D004897 ORTHO05D005928 7.3e-68 262.3 296 51.7
Duzib084G0246 Durio zibethinus HOM05D004897 ORTHO05D005928 9.5e-68 261.9 296 52.7
Phvul.002G329100 Phaseolus vulgaris HOM05D004897 ORTHO05D005928 9.5e-68 261.9 300 50.0
Glyma.05G244800 Glycine max HOM05D004897 ORTHO05D005928 1.2e-67 261.5 377 48.5
Glyma.08G053300 Glycine max HOM05D004897 ORTHO05D005928 2.1e-67 260.8 300 50.3
TWI81G0456 Tripterygium wilfordii HOM05D004897 ORTHO05D005928 2.1e-67 260.8 346 49.1
Oeu014377.2 Olea europaea HOM05D004897 ORTHO05D005928 2.8e-67 260.4 300 49.0
MSTRG.4571 Avicennia marina HOM05D004897 ORTHO05D005928 6.2e-67 259.2 300 49.7
FAN04G2242 Fragaria x ananassa HOM05D004897 ORTHO05D005928 6.2e-67 259.2 296 50.3
Aqoxy3G00106 Aquilegia oxysepala HOM05D004897 ORTHO05D005928 8.1e-67 258.8 298 49.7
Gohir.A09G175700 Gossypium hirsutum HOM05D004897 ORTHO05D005928 8.1e-67 258.8 296 52.0
FAN18G0124 Fragaria x ananassa HOM05D004897 ORTHO05D005928 1.8e-66 257.7 296 50.3
Lalb_Chr05g0221751 Lupinus albus HOM05D004897 ORTHO05D005928 2.3e-66 257.3 300 49.3
Medtr8g107060 Medicago truncatula HOM05D004897 ORTHO05D005928 2.3e-66 257.3 299 50.2
Thhalv10007004m.g Eutrema salsugineum HOM05D004897 ORTHO05D005928 4.0e-66 256.5 295 51.5
FAN13G1819 Fragaria x ananassa HOM05D004897 ORTHO05D005928 4.0e-66 256.5 296 49.7
Lalb_Chr16g0387081 Lupinus albus HOM05D004897 ORTHO05D005928 4.0e-66 256.5 301 49.8
Actinidia35124 Actinidia chinensis HOM05D004897 ORTHO05D005928 1.5e-65 254.6 296 49.3
BcaB07g31825 Brassica carinata HOM05D004897 ORTHO05D005928 1.5e-65 254.6 295 51.9
Lsat_1_v5_gn_8_144040 Lactuca sativa HOM05D004897 ORTHO05D005928 1.5e-65 254.6 296 50.0
SalBow1G4576 Salvia bowleyana HOM05D004897 ORTHO05D005928 1.5e-65 254.6 296 49.3
Cc04_g06380 Coffea canephora HOM05D004897 ORTHO05D005928 2.6e-65 253.8 297 49.5
Lj4g0010445 Lotus japonicus HOM05D004897 ORTHO05D005928 3.4e-65 253.4 300 50.0
Dinv18253 Davidia involucrata HOM05D004897 ORTHO05D005928 4.4e-65 253.1 335 47.2
FAN08G3076 Fragaria x ananassa HOM05D004897 ORTHO05D005928 4.4e-65 253.1 296 49.7
Sp1g16170 Schrenkiella parvula HOM05D004897 ORTHO05D005928 7.5e-65 252.3 295 51.2
A06p14220 Brassica napus HOM05D004897 ORTHO05D005928 1.3e-64 251.5 295 51.2
Ah.11g045250 Amaranthus hybridus HOM05D004897 ORTHO05D005928 2.2e-64 250.8 299 50.2
BcaC05g25714 Brassica carinata HOM05D004897 ORTHO05D005928 2.2e-64 250.8 295 51.2
C05p16500 Brassica napus HOM05D004897 ORTHO05D005928 2.2e-64 250.8 295 51.2
BolC5t30347H Brassica oleracea HOM05D004897 ORTHO05D005928 2.2e-64 250.8 295 51.2
CsaV3_1G004270 Cucumis sativus L. HOM05D004897 ORTHO05D005928 3.7e-64 250.0 298 50.0
ECA233G2541 Erigeron canadensis HOM05D004897 ORTHO05D005928 3.7e-64 250.0 589 37.7
BraA06t24553Z Brassica rapa HOM05D004897 ORTHO05D005928 4.9e-64 249.6 295 51.2
Rhsim12G0138900 Rhododendron simsii HOM05D004897 ORTHO05D005928 4.9e-64 249.6 300 48.3
AT1G18190 Arabidopsis thaliana HOM05D004897 ORTHO05D005928 8.3e-64 248.8 295 50.2
Nitab4.5_0006894g0040 Nicotiana tabacum HOM05D004897 ORTHO05D005928 8.3e-64 248.8 331 46.2
Psat7g002120 Pisum sativum HOM05D004897 ORTHO05D005928 1.1e-63 248.4 297 48.8
ClCG06G014390 Citrullus lanatus HOM05D004897 ORTHO05D005928 1.4e-63 248.1 301 48.2
Nitab4.5_0001456g0120 Nicotiana tabacum HOM05D004897 ORTHO05D005928 1.4e-63 248.1 322 47.5
Zm00001eb072950 Zea mays HOM05D004897 ORTHO05D005928 5.4e-63 246.1 142 97.2
Haze_18817 Corylus avellana HOM05D004897 ORTHO05D005928 7.1e-63 245.7 357 43.7
AL1G30560 Arabidopsis lyrata HOM05D004897 ORTHO05D005928 1.2e-62 245.0 295 50.2
Manes.14G170400 Manihot esculenta HOM05D004897 ORTHO05D005928 1.6e-62 244.6 295 49.2
Carub.0001s1783 Capsella rubella HOM05D004897 ORTHO05D005928 2.1e-62 244.2 295 49.8
SGA_v2.0_scaffold168G38498 Striga asiatica HOM05D004897 ORTHO05D005928 2.7e-62 243.8 300 48.3
arahy.Tifrunner.gnm1.ann1.Y8NJDB Arachis hypogaea HOM05D004897 ORTHO05D005928 6.0e-62 242.7 299 47.8
arahy.Tifrunner.gnm1.ann1.QTT902 Arachis hypogaea HOM05D004897 ORTHO05D005928 1.7e-61 241.1 299 47.5
COL.COLO4_16135 Corchorus olitorius HOM05D004897 ORTHO05D005928 1.7e-61 241.1 296 51.4
Aa31LG7G2880 Aethionema arabicum HOM05D004897 ORTHO05D005928 2.3e-61 240.7 326 46.0
TPR.G1406 Trifolium pratense HOM05D004897 ORTHO05D005928 6.6e-61 239.2 289 49.5
Peaxi162Scf00683g00441 Petunia axillaris HOM05D004897 ORTHO05D005928 1.5e-60 238.0 259 51.7
Atru.chr9.1748 Acer truncatum HOM05D004897 ORTHO05D005928 6.2e-59 232.6 296 47.3
BraA08t34983Z Brassica rapa HOM05D004897 ORTHO05D005928 6.2e-59 232.6 468 37.6
Zm00001eb168530 Zea mays HOM05D004897 ORTHO05D005928 4.0e-58 229.9 127 98.4
Zm00001eb243110 Zea mays HOM05D004897 ORTHO05D005928 4.0e-58 229.9 127 98.4
Zm00001eb381910 Zea mays HOM05D004897 ORTHO05D005928 4.0e-58 229.9 127 98.4
Zm00001eb382530 Zea mays HOM05D004897 ORTHO05D005928 4.0e-58 229.9 127 98.4
A08p30510 Brassica napus HOM05D004897 ORTHO05D005928 1.2e-57 228.4 580 37.4
C08p18450 Brassica napus HOM05D004897 ORTHO05D005928 1.2e-57 228.4 468 37.2
AUR62042935 Chenopodium quinoa HOM05D004897 ORTHO05D005928 1.2e-57 228.4 580 34.7
Sed0018128 Sechium edule HOM05D004897 ORTHO05D005928 9.9e-57 225.3 301 44.9
HanXRQChr08g0227441 Helianthus annuus HOM05D004897 ORTHO05D005928 1.7e-56 224.6 295 47.1
PGR083G0946 Punica granatum HOM05D004897 ORTHO05D005928 4.9e-56 223.0 299 43.5
Cpa.g.sc3.408 Carica papaya HOM05D004897 ORTHO05D005928 1.9e-55 221.1 227 54.6
Ca_17200_v3 Cicer arietinum L. HOM05D004897 ORTHO05D005928 7.1e-55 219.2 300 45.0
MELO3C017351.2 Cucumis melo HOM05D004897 ORTHO05D005928 4.6e-54 216.5 298 45.6
Zm00001eb280830 Zea mays HOM05D004897 ORTHO05D005928 7.8e-54 215.7 119 98.3
BcaC07g38902 Brassica carinata HOM05D004897 ORTHO05D005928 1.3e-53 214.9 540 35.2
Sed0002019 Sechium edule HOM05D004897 ORTHO05D005928 5.8e-49 199.5 301 42.2
FvH4_5g17221 Fragaria vesca HOM05D004897 ORTHO05D005928 1.7e-48 198.0 202 54.0
Dinv10174 Davidia involucrata HOM05D004897 ORTHO05D005928 2.9e-48 197.2 203 54.2
BcaNung05436 Brassica carinata HOM05D004897 ORTHO05D005928 6.4e-48 196.1 273 46.2
vmacro16414 Vaccinium macrocarpon HOM05D004897 ORTHO05D005928 4.2e-47 193.4 442 33.5
Zm00001eb382330 Zea mays HOM05D004897 ORTHO05D005928 1.3e-40 171.8 103 91.3
Pp3c2_5550 Physcomitrium patens HOM05D004897 ORTHO05D005928 2.3e-37 161.0 324 38.3
BolC8t49476H Brassica oleracea HOM05D004897 ORTHO05D005928 2.8e-35 154.1 257 40.5
CARHR018760 Cardamine hirsuta HOM05D004897 ORTHO05D005928 2.8e-35 154.1 207 44.0
GSVIVG01008417001 Vitis vinifera HOM05D004897 ORTHO05D005928 1.2e-33 148.7 161 53.4
BcaB03g12969 Brassica carinata HOM05D004897 ORTHO05D005928 1.0e-32 145.6 277 40.4
GSVIVG01008418001 Vitis vinifera HOM05D004897 ORTHO05D005928 3.2e-31 140.6 107 70.1
ATR1102G065 Amborella trichopoda HOM05D004897 ORTHO05D005928 7.9e-30 136.0 108 71.3
AagrBONN_evm.TU.Sc2ySwM_344.4779 Anthoceros agrestis HOM05D004897 ORTHO05D005928 4.3e-28 130.2 324 34.0
ATR1102G018 Amborella trichopoda HOM05D004897 ORTHO05D005928 3.7e-27 127.1 202 41.6
Gohir.D09G170550 Gossypium hirsutum HOM05D004897 ORTHO05D005928 3.7e-27 127.1 137 54.7
Mapoly0056s0112 Marchantia polymorpha HOM05D004897 ORTHO05D005928 1.8e-26 124.8 245 37.1
Gorai.006G192100 Gossypium raimondii HOM05D004897 ORTHO05D005928 3.1e-26 124.0 137 54.0
SEGI_33031 Sequoiadendron giganteum HOM05D004897 ORTHO05D005928 2.0e-17 94.7 183 33.9
unitig_0.g806 Utricularia gibba HOM05D004897 ORTHO05D005928 2.6e-17 94.4 156 39.1
Oeu041181.1 Olea europaea HOM05D004897 ORTHO05D005928 3.4e-17 94.0 259 32.4
CDE05G0958 Ceratophyllum demersum HOM05D004897 ORTHO05D005928 1.0e-16 92.4 246 37.8
CARHR018770 Cardamine hirsuta HOM05D004897 ORTHO05D005928 7.2e-15 86.3 249 44.6
Oeu041185.1 Olea europaea HOM05D004897 ORTHO05D005928 2.7e-14 84.3 91 53.8
Zm00001eb345920 Zea mays HOM05D003167 ORTHO05D023710 9.7e-12 75.9 159 39.6
AUR62041008 Chenopodium quinoa HOM05D004897 ORTHO05D005928 1.5e-09 68.6 342 31.9
Ca_25562_v3 Cicer arietinum L. HOM05D004485 ORTHO05D005485 1.1e-07 62.4 286 27.3
arahy.Tifrunner.gnm1.ann1.U711QF Arachis hypogaea HOM05D004897 ORTHO05D005928 1.4e-07 62.0 82 48.8
SMO269G0021 Selaginella moellendorffii HOM05D004897 ORTHO05D005928 1.4e-07 62.0 456 27.0
Nn8g39096 Nelumbo nucifera HOM05D004485 ORTHO05D005485 3.2e-07 60.8 306 24.8
Psat1g046640 Pisum sativum HOM05D004485 ORTHO05D005485 4.2e-07 60.5 287 25.8
Atru.chr7.1446 Acer truncatum HOM05D004485 ORTHO05D005485 7.2e-07 59.7 286 24.8
Dinv36695 Davidia involucrata HOM05D004485 ORTHO05D005485 7.2e-07 59.7 290 25.2
Lj2g0014691 Lotus japonicus HOM05D004485 ORTHO05D005485 7.2e-07 59.7 286 25.9
Manes.16G110100 Manihot esculenta HOM05D004485 ORTHO05D005485 9.4e-07 59.3 289 23.9
Sp3g33270 Schrenkiella parvula HOM05D004485 ORTHO05D005485 1.2e-06 58.9 294 23.1
Zm00001eb371090 Zea mays HOM05D004485 ORTHO05D005485 1.2e-06 58.9 302 25.8
Os01g0744400 Oryza sativa ssp. japonica HOM05D004485 ORTHO05D005485 1.6e-06 58.5 302 25.5
SEGI_22595 Sequoiadendron giganteum HOM05D004897 ORTHO05D005928 2.1e-06 58.2 114 40.4
TPR.G21387 Trifolium pratense HOM05D004485 ORTHO05D005485 2.1e-06 58.2 286 25.9
Phvul.004G170300 Phaseolus vulgaris HOM05D004485 ORTHO05D005485 2.7e-06 57.8 294 24.8
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 3.6e-06 57.4 290 24.1
TWI34G0799 Tripterygium wilfordii HOM05D004485 ORTHO05D005485 3.6e-06 57.4 299 25.4
TAR624G1325 Trochodendron aralioides HOM05D004485 ORTHO05D005485 3.6e-06 57.4 297 26.3
Aqoxy7G03881 Aquilegia oxysepala HOM05D004485 ORTHO05D005485 4.7e-06 57.0 294 23.5
Thhalv10001922m.g Eutrema salsugineum HOM05D004485 ORTHO05D005485 4.7e-06 57.0 294 23.1
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 4.7e-06 57.0 290 24.1
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 4.7e-06 57.0 286 24.5
VMungo0464G1472 Vigna mungo HOM05D004485 ORTHO05D005485 4.7e-06 57.0 323 26.0
GSVIVG01015314001 Vitis vinifera HOM05D004485 ORTHO05D005485 6.1e-06 56.6 293 24.6
BcaNung04089 Brassica carinata HOM05D004485 ORTHO05D005485 7.9e-06 56.2 289 22.8
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 7.9e-06 56.2 289 22.8
CSS0002032 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 7.9e-06 56.2 290 24.5
MD02G1064300 Malus domestica HOM05D004485 ORTHO05D005485 7.9e-06 56.2 289 24.9


User provided reference genes

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