Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb068100 Zea mays HOM05D004264 ORTHO05D004680 2.4e-105 385.6 199 100.0
Zm00001eb423320 Zea mays HOM05D004264 ORTHO05D004680 1.8e-44 183.3 165 61.2
TAR623G1256 Trochodendron aralioides HOM05D004264 ORTHO05D004680 5.7e-35 151.8 196 39.3
TWI74G1571 Tripterygium wilfordii HOM05D004264 ORTHO05D004680 4.8e-34 148.7 196 39.8
Os04g0445400 Oryza sativa ssp. japonica HOM05D004264 ORTHO05D004680 5.4e-33 145.2 199 43.7
Thecc.05G009200 Theobroma cacao HOM05D004264 ORTHO05D004680 7.7e-32 141.4 191 38.2
Manes.09G110101 Manihot esculenta HOM05D004264 ORTHO05D004680 3.8e-31 139.0 197 38.6
CsaV3_4G026470 Cucumis sativus L. HOM05D004264 ORTHO05D004680 6.5e-31 138.3 196 38.3
ClCG04G006790 Citrullus lanatus HOM05D004264 ORTHO05D004680 1.1e-30 137.5 196 37.8
Gohir.D01G219000 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.9e-30 136.7 191 38.7
Actinidia29078 Actinidia chinensis HOM05D004264 ORTHO05D004680 2.5e-30 136.3 196 35.7
Actinidia11558 Actinidia chinensis HOM05D004264 ORTHO05D004680 5.5e-30 135.2 196 36.7
Cfa017136 Carpinus fangiana HOM05D004264 ORTHO05D004680 5.5e-30 135.2 196 37.2
Dinv08428 Davidia involucrata HOM05D004264 ORTHO05D008966 5.5e-30 135.2 196 36.7
Duzib093G0558 Durio zibethinus HOM05D004264 ORTHO05D004680 5.5e-30 135.2 191 38.7
PGR004G2045 Punica granatum HOM05D004264 ORTHO05D004680 5.5e-30 135.2 196 38.8
FAN05G3264 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.2e-29 134.0 198 39.9
FAN05G1725 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.6e-29 133.7 198 39.9
FAN05G1746 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.6e-29 133.7 198 39.9
Sed0006342 Sechium edule HOM05D004264 ORTHO05D004680 1.6e-29 133.7 197 34.5
Atru.chr8.2305 Acer truncatum HOM05D004264 ORTHO05D004680 2.8e-29 132.9 197 35.0
FAN09G4226 Fragaria x ananassa HOM05D004264 ORTHO05D004680 4.7e-29 132.1 198 38.4
Potri.016G122350 Populus trichocarpa HOM05D004264 ORTHO05D004680 6.1e-29 131.7 196 36.2
Lj3g0014192 Lotus japonicus HOM05D004264 ORTHO05D004680 1.8e-28 130.2 197 37.1
CiPaw.09G213400 Carya illinoinensis HOM05D004264 ORTHO05D004680 3.0e-28 129.4 196 35.2
Nn8g40771 Nelumbo nucifera HOM05D004264 ORTHO05D004680 3.0e-28 129.4 189 35.4
FAN02G3507 Fragaria x ananassa HOM05D004264 ORTHO05D004680 6.8e-28 128.3 198 38.9
Glyma.07G154451 Glycine max HOM05D004264 ORTHO05D004680 6.8e-28 128.3 192 35.9
Gohir.A01G229100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.5e-27 127.1 191 37.2
Hma1.2p1_0479F.1_g161540 Hydrangea macrophylla HOM05D004264 ORTHO05D004680 1.5e-27 127.1 192 35.9
MBI10_g27417_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 1.5e-27 127.1 189 38.1
Solyc04g072210.4 Solanum lycopersicum HOM05D004264 ORTHO05D004680 1.5e-27 127.1 196 35.7
PSO801G0087 Papaver somniferum HOM05D004264 ORTHO05D004680 2.0e-27 126.7 197 36.5
Glyma.18G205200 Glycine max HOM05D004264 ORTHO05D004680 4.4e-27 125.6 192 35.4
Hund14916 Selenicereus undatus HOM05D004264 ORTHO05D004680 4.4e-27 125.6 191 37.2
Duzib106G1969 Durio zibethinus HOM05D004264 ORTHO05D004680 5.7e-27 125.2 190 35.8
PSO339G3729 Papaver somniferum HOM05D004264 ORTHO05D004680 5.7e-27 125.2 197 36.5
COL.COLO4_14480 Corchorus olitorius HOM05D004264 ORTHO05D004680 1.7e-26 123.6 190 37.9
Lalb_Chr01g0023271 Lupinus albus HOM05D004264 ORTHO05D004680 1.7e-26 123.6 191 36.1
ECA233G6002 Erigeron canadensis HOM05D004264 ORTHO05D004680 2.2e-26 123.2 189 38.6
Gorai.002G265700 Gossypium raimondii HOM05D004264 ORTHO05D004680 2.2e-26 123.2 191 36.1
MD12G1177600 Malus domestica HOM05D004264 ORTHO05D004680 2.8e-26 122.9 187 38.0
CARHR083200 Cardamine hirsuta HOM05D004264 ORTHO05D004680 6.3e-26 121.7 190 34.2
Lsat_1_v5_gn_6_104820 Lactuca sativa HOM05D004264 ORTHO05D004680 6.3e-26 121.7 193 38.3
AT3G08880 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 1.6e-24 117.1 190 33.7
Medtr1g100900 Medicago truncatula HOM05D004264 ORTHO05D004680 1.6e-24 117.1 202 33.7
Sp3g07270 Schrenkiella parvula HOM05D004264 ORTHO05D004680 1.6e-24 117.1 190 33.7
THA.LOC104816187 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 2.0e-24 116.7 196 32.7
CANSAT35G1133 Cannabis sativa HOM05D004264 ORTHO05D004680 4.5e-24 115.5 196 33.2
MD04G1163700 Malus domestica HOM05D004264 ORTHO05D004680 4.5e-24 115.5 189 35.4
DCAR_015367 Daucus carota HOM05D004264 ORTHO05D004680 1.3e-23 114.0 191 35.1
VMungo1383G0816 Vigna mungo HOM05D004264 ORTHO05D004680 1.3e-23 114.0 197 33.5
AL3G19870 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 1.1e-22 110.9 190 32.1
Phvul.008G094300 Phaseolus vulgaris HOM05D004264 ORTHO05D004680 1.1e-22 110.9 212 32.5
Psat3g124240 Pisum sativum HOM05D004264 ORTHO05D004680 1.1e-22 110.9 193 31.6
Carub.0003s0799 Capsella rubella HOM05D004264 ORTHO05D004680 2.1e-21 106.7 190 32.1
SEGI_36861 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 2.1e-21 106.7 191 33.0
AL6G10480 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 4.0e-20 102.4 185 32.4
THA.LOC104827057 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 6.8e-20 101.7 197 29.4
BcaC09g47997 Brassica carinata HOM05D004264 ORTHO05D004680 6.4e-18 95.1 190 28.4
AT5G01570 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 1.8e-17 93.6 186 32.3
Carub.0006s0026 Capsella rubella HOM05D004264 ORTHO05D004680 2.4e-17 93.2 185 30.8
Thhalv10021618m.g Eutrema salsugineum HOM05D004264 ORTHO05D004680 3.5e-16 89.4 190 27.9
BcaC09g48040 Brassica carinata HOM05D004264 ORTHO05D004680 5.9e-16 88.6 190 27.4
BNapus_Darmor_BZH_scaffold_167p00190 Brassica napus HOM05D004264 ORTHO05D004680 5.9e-16 88.6 190 27.4
MBI03_g10315_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 1.3e-15 87.4 180 31.7
BraA01t04327Z Brassica rapa HOM05D004264 ORTHO05D004680 3.9e-15 85.9 190 28.9
VMungo1383G0682 Vigna mungo HOM05D004264 ORTHO05D004680 9.5e-14 81.3 269 24.9
FvH4_6g10921 Fragaria vesca HOM05D004264 ORTHO05D004680 1.4e-12 77.4 86 46.5
BcaB04g18563 Brassica carinata HOM05D004264 ORTHO05D004680 3.1e-12 76.3 196 26.0
Sc09g0006620 Simmondsia chinensis HOM05D004264 ORTHO05D004680 1.2e-11 74.3 142 28.2
EL10Ac5g12510 Beta vulgaris HOM05D004264 ORTHO05D004680 1.5e-11 73.9 86 44.2
Rhsim05G0223700 Rhododendron simsii HOM05D004264 ORTHO05D004680 2.6e-11 73.2 88 38.6
AUR62030782 Chenopodium quinoa HOM05D004264 ORTHO05D004680 4.4e-11 72.4 196 28.1
Ah.12g058940 Amaranthus hybridus HOM05D004264 ORTHO05D004680 5.8e-11 72.0 190 25.8
RcHm_v2.0_Chr3g0462171 Rosa chinensis HOM05D004264 ORTHO05D004680 5.8e-11 72.0 87 42.5
Cc05_g01720 Coffea canephora HOM05D004264 ORTHO05D004680 2.2e-10 70.1 97 35.1
QL07p034201 Quercus lobata HOM05D004264 ORTHO05D004680 2.2e-10 70.1 105 35.2
arahy.Tifrunner.gnm1.ann1.IC5F1T Arachis hypogaea HOM05D004264 ORTHO05D004680 2.9e-10 69.7 80 42.5
AUR62030512 Chenopodium quinoa HOM05D004264 ORTHO05D004680 4.9e-10 68.9 196 28.1
Haze_21059 Corylus avellana HOM05D004264 ORTHO05D004680 4.9e-10 68.9 105 36.2
Sabra16G0118000 Salix brachista HOM05D004264 ORTHO05D004680 4.9e-10 68.9 192 27.6
HanXRQChr13g0390241 Helianthus annuus HOM05D004264 ORTHO05D004680 6.4e-10 68.6 103 34.0
GSVIVG01030301001 Vitis vinifera HOM05D004264 ORTHO05D004680 6.4e-10 68.6 100 35.0
arahy.Tifrunner.gnm1.ann1.G0I7HS Arachis hypogaea HOM05D004264 ORTHO05D004680 1.1e-09 67.8 80 41.2
vmacro20314 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 1.1e-09 67.8 101 37.6
CSS0010779 Camellia sinensis var. sinensis HOM05D004264 ORTHO05D004680 1.4e-09 67.4 71 43.7
Peaxi162Scf00522g00315 Petunia axillaris HOM05D004264 ORTHO05D004680 1.4e-09 67.4 112 35.7
Ciclev10013172m.g Citrus clementina HOM05D004264 ORTHO05D004680 2.4e-09 66.6 101 32.7
Rhsim05G0223600 Rhododendron simsii HOM05D004264 ORTHO05D004680 3.2e-09 66.2 105 37.1
Gohir.D11G227700 Gossypium hirsutum HOM05D004264 ORTHO05D004680 4.1e-09 65.9 100 35.0
RcHm_v2.0_Chr3g0462181 Rosa chinensis HOM05D004264 ORTHO05D004680 4.1e-09 65.9 106 34.9
MELO3C026013.2 Cucumis melo HOM05D004264 ORTHO05D004680 1.2e-08 64.3 105 32.4
Eucgr.G00894 Eucalyptus grandis HOM05D004264 ORTHO05D004680 1.6e-08 63.9 105 32.4
Gorai.011G276000 Gossypium raimondii HOM05D004264 ORTHO05D004680 2.0e-08 63.5 100 35.0
Sopen04g028370 Solanum pennellii HOM05D004264 ORTHO05D004680 2.7e-08 63.2 105 35.2
FAN14G2539 Fragaria x ananassa HOM05D004264 ORTHO05D004680 3.5e-08 62.8 106 32.1
Aa31LG1G23180 Aethionema arabicum HOM05D004264 ORTHO05D004680 4.6e-08 62.4 153 30.1
Gohir.D10G240300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 4.6e-08 62.4 100 34.0
Oeu005191.1 Olea europaea HOM05D004264 ORTHO05D004680 4.6e-08 62.4 56 55.4
TPR.G1155 Trifolium pratense HOM05D004264 ORTHO05D004680 4.6e-08 62.4 67 43.3
Aqoxy3G03064 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 1.0e-07 61.2 88 34.1
FvH4_6g10920 Fragaria vesca HOM05D004264 ORTHO05D004680 1.0e-07 61.2 106 32.1
HanXRQChr02g0036811 Helianthus annuus HOM05D004264 ORTHO05D004680 1.0e-07 61.2 105 32.4
Ca_07679_v3 Cicer arietinum L. HOM05D004264 ORTHO05D004680 1.3e-07 60.8 55 49.1
TAR209G0008 Trochodendron aralioides HOM05D004264 ORTHO05D004680 1.3e-07 60.8 106 34.9
SEGI_24150 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 3.0e-07 59.7 86 34.9
Haze_21060 Corylus avellana HOM05D004264 ORTHO05D004680 3.9e-07 59.3 55 49.1
Gorai.004G074900 Gossypium raimondii HOM05D004264 ORTHO05D004680 6.6e-07 58.5 125 31.2
MSTRG.5553 Avicennia marina HOM05D004264 ORTHO05D004680 8.6e-07 58.2 101 29.7
unitig_88.g27662 Utricularia gibba HOM05D004264 ORTHO05D004680 1.5e-06 57.4 181 24.3
HPP92_011366 Vanilla planifolia HOM05D004264 ORTHO05D004680 1.9e-06 57.0 105 30.5
Cpa.g.sc120.22 Carica papaya HOM05D004264 ORTHO05D004680 2.5e-06 56.6 105 29.5
Aqoxy3G03065 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 3.3e-06 56.2 101 31.7
Potri.012G107200 Populus trichocarpa HOM05D004264 ORTHO05D004680 7.3e-06 55.1 55 49.1
VMungo1215G3396 Vigna mungo HOM05D004264 ORTHO05D004680 7.3e-06 55.1 55 47.3
DCAR_018676 Daucus carota HOM05D004264 ORTHO05D004680 9.5e-06 54.7 105 28.6
unitig_0.g2545 Utricularia gibba HOM05D004264 ORTHO05D004680 9.5e-06 54.7 137 28.5


User provided reference genes

Program Settings