Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb068040 Zea mays HOM05D005425 ORTHO05D006686 4.6e-80 301.6 203 100.0
Os04g0653100 Oryza sativa ssp. japonica HOM05D005425 ORTHO05D006686 1.1e-54 217.2 209 81.3
Lj4g0004112 Lotus japonicus HOM05D005425 ORTHO05D006686 7.6e-43 177.9 108 83.3
ATR0006G051 Amborella trichopoda HOM05D005425 ORTHO05D006686 1.3e-42 177.2 107 84.1
Eucgr.C00752 Eucalyptus grandis HOM05D005425 ORTHO05D006686 3.8e-42 175.6 108 84.3
Cfa010679 Carpinus fangiana HOM05D005425 ORTHO05D006686 4.9e-42 175.3 108 82.4
AUR62017596 Chenopodium quinoa HOM05D005425 ORTHO05D006686 4.9e-42 175.3 109 81.7
Haze_26083 Corylus avellana HOM05D005425 ORTHO05D006686 6.4e-42 174.9 108 82.4
SEGI_31971 Sequoiadendron giganteum HOM05D005425 ORTHO05D006686 1.1e-41 174.1 109 82.6
AUR62015135 Chenopodium quinoa HOM05D005425 ORTHO05D006686 1.9e-41 173.3 109 79.8
Gorai.001G018900 Gossypium raimondii HOM05D005425 ORTHO05D006686 2.4e-41 172.9 107 84.1
Gohir.A07G018500 Gossypium hirsutum HOM05D005425 ORTHO05D006686 3.2e-41 172.6 107 84.1
PGR044G1074 Punica granatum HOM05D005425 ORTHO05D006686 3.2e-41 172.6 108 84.3
MD15G1225900 Malus domestica HOM05D005425 ORTHO05D006686 4.2e-41 172.2 109 81.7
COL.COLO4_21175 Corchorus olitorius HOM05D005425 ORTHO05D006686 9.3e-41 171.0 107 81.3
Lalb_Chr07g0181511 Lupinus albus HOM05D005425 ORTHO05D006686 9.3e-41 171.0 107 82.2
Sc19g0002240 Simmondsia chinensis HOM05D005425 ORTHO05D006686 9.3e-41 171.0 110 78.2
Haze_03605 Corylus avellana HOM05D006517 ORTHO05D007886 1.2e-40 170.6 108 81.5
MD02G1106000 Malus domestica HOM05D005425 ORTHO05D006686 1.2e-40 170.6 109 79.8
GSVIVG01000275001 Vitis vinifera HOM05D005425 ORTHO05D006686 1.2e-40 170.6 107 82.2
Atru.chr7.1809 Acer truncatum HOM05D005425 ORTHO05D006686 2.1e-40 169.9 109 78.9
Ca_21353_v3 Cicer arietinum L. HOM05D005425 ORTHO05D006686 2.1e-40 169.9 107 80.4
Gohir.D07G018300 Gossypium hirsutum HOM05D005425 ORTHO05D006686 2.1e-40 169.9 107 83.2
arahy.Tifrunner.gnm1.ann1.A16VYK Arachis hypogaea HOM05D005425 ORTHO05D006686 2.7e-40 169.5 107 79.4
arahy.Tifrunner.gnm1.ann1.I1NZHN Arachis hypogaea HOM05D005425 ORTHO05D006686 3.5e-40 169.1 107 79.4
CiPaw.03G198700 Carya illinoinensis HOM05D005425 ORTHO05D006686 3.5e-40 169.1 108 79.6
Prupe.7G189100 Prunus persica HOM05D005425 ORTHO05D006686 4.6e-40 168.7 109 79.8
Nn6g31504 Nelumbo nucifera HOM05D005425 ORTHO05D006686 7.9e-40 167.9 107 78.5
Dinv19577 Davidia involucrata HOM05D005425 ORTHO05D006686 1.3e-39 167.2 107 79.4
Lj4P729T25 Lonicera japonica HOM05D005425 ORTHO05D006686 1.3e-39 167.2 107 79.4
VMungo1215G3244 Vigna mungo HOM05D005425 ORTHO05D006686 1.3e-39 167.2 107 80.4
Glyma.17G043500 Glycine max HOM05D005425 ORTHO05D006686 1.8e-39 166.8 107 80.4
vmacro16402 Vaccinium macrocarpon HOM05D005425 ORTHO05D006686 1.8e-39 166.8 108 80.6
Ciclev10009195m.g Citrus clementina HOM05D005425 ORTHO05D006686 2.3e-39 166.4 104 81.7
Lalb_Chr12g0200431 Lupinus albus HOM05D005425 ORTHO05D006686 2.3e-39 166.4 107 80.4
Medtr4g123593 Medicago truncatula HOM05D005425 ORTHO05D006686 3.0e-39 166.0 107 80.4
Psat4g020320 Pisum sativum HOM05D005425 ORTHO05D006686 3.0e-39 166.0 106 82.1
TWI34G0652 Tripterygium wilfordii HOM05D005425 ORTHO05D006686 3.0e-39 166.0 107 80.4
TWI63G1799 Tripterygium wilfordii HOM05D005425 ORTHO05D006686 3.0e-39 166.0 107 79.4
EL10Ac9g22844 Beta vulgaris HOM05D005425 ORTHO05D006686 3.9e-39 165.6 109 76.1
ECA247G3713 Erigeron canadensis HOM05D005425 ORTHO05D006686 3.9e-39 165.6 108 77.8
RcHm_v2.0_Chr2g0096571 Rosa chinensis HOM05D005425 ORTHO05D006686 6.7e-39 164.9 109 77.1
Glyma.13G116300 Glycine max HOM05D005425 ORTHO05D006686 8.7e-39 164.5 107 79.4
TPR.G12630 Trifolium pratense HOM05D005425 ORTHO05D006686 8.7e-39 164.5 108 78.7
Aqoxy6G03062 Aquilegia oxysepala HOM05D005425 ORTHO05D006686 1.1e-38 164.1 109 76.1
Phvul.003G125400 Phaseolus vulgaris HOM05D005425 ORTHO05D006686 1.1e-38 164.1 105 80.0
Potri.006G217400 Populus trichocarpa HOM05D005425 ORTHO05D006686 1.1e-38 164.1 107 81.3
FvH4_1g09870 Fragaria vesca HOM05D005425 ORTHO05D006686 1.5e-38 163.7 109 76.1
FAN19G0780 Fragaria x ananassa HOM05D005425 ORTHO05D006686 1.5e-38 163.7 109 76.1
Thecc.09G067100 Theobroma cacao HOM05D005425 ORTHO05D006686 1.5e-38 163.7 107 79.4
Duzib150G0231 Durio zibethinus HOM05D005425 ORTHO05D006686 1.9e-38 163.3 107 77.6
HanXRQChr02g0040411 Helianthus annuus HOM05D005425 ORTHO05D006686 1.9e-38 163.3 107 77.6
Hund24245 Selenicereus undatus HOM05D000001 ORTHO05D000003 3.3e-38 162.5 108 75.9
Actinidia20626 Actinidia chinensis HOM05D005425 ORTHO05D006686 4.3e-38 162.2 107 78.5
Duzib168G1380 Durio zibethinus HOM05D005425 ORTHO05D006686 4.3e-38 162.2 107 78.5
HPP92_002368 Vanilla planifolia HOM05D005425 ORTHO05D006686 9.6e-38 161.0 112 72.3
HPP92_027595 Vanilla planifolia HOM05D005425 ORTHO05D006686 9.6e-38 161.0 112 72.3
CANSAT56G0436 Cannabis sativa HOM05D005425 ORTHO05D006686 1.3e-37 160.6 104 76.9
CANSAT56G2296 Cannabis sativa HOM05D005425 ORTHO05D006686 1.3e-37 160.6 104 76.9
Ah.01g013630 Amaranthus hybridus HOM05D005425 ORTHO05D006686 1.6e-37 160.2 109 73.4
MSTRG.1593 Avicennia marina HOM05D005425 ORTHO05D006686 1.6e-37 160.2 108 78.7
PSO675G8782 Papaver somniferum HOM05D005425 ORTHO05D006686 1.6e-37 160.2 106 76.4
PSO717G0103 Papaver somniferum HOM05D005425 ORTHO05D006686 1.6e-37 160.2 106 76.4
Cc01_g12410 Coffea canephora HOM05D005425 ORTHO05D006686 2.1e-37 159.8 107 72.9
Sabra06G0167600 Salix brachista HOM05D005425 ORTHO05D006686 2.8e-37 159.5 105 81.9
Lsat_1_v5_gn_1_2721 Lactuca sativa HOM05D005425 ORTHO05D006686 3.7e-37 159.1 108 75.0
CSS0042296 Camellia sinensis var. sinensis HOM05D005425 ORTHO05D006686 4.8e-37 158.7 103 78.6
Sed0015214 Sechium edule HOM05D005425 ORTHO05D006686 8.1e-37 157.9 107 77.6
Oeu023197.1 Olea europaea HOM05D005425 ORTHO05D006686 1.1e-36 157.5 109 75.2
HPP92_010993 Vanilla planifolia HOM05D005425 ORTHO05D006686 1.1e-36 157.5 111 73.0
CsaV3_1G041480 Cucumis sativus L. HOM05D005425 ORTHO05D006686 1.8e-36 156.8 109 74.3
Rhsim12G0137300 Rhododendron simsii HOM05D005425 ORTHO05D006686 3.1e-36 156.0 115 73.0
DCAR_012869 Daucus carota HOM05D005425 ORTHO05D006686 4.0e-36 155.6 107 72.9
Manes.03G055300 Manihot esculenta HOM05D005425 ORTHO05D006686 1.5e-35 153.7 107 72.9
MBI13_g05972_MAGBIO Magnolia biondii HOM05D005425 ORTHO05D006686 4.5e-35 152.1 110 72.7
Manes.16G088201 Manihot esculenta HOM05D005425 ORTHO05D006686 4.5e-35 152.1 105 73.3
Migut.C01372 Erythranthe guttata HOM05D005425 ORTHO05D006686 5.8e-35 151.8 108 72.2
Solyc11g073240.2 Solanum lycopersicum HOM05D005425 ORTHO05D006686 7.6e-35 151.4 107 73.8
Nitab4.5_0000610g0160 Nicotiana tabacum HOM05D005425 ORTHO05D006686 1.3e-34 150.6 107 74.8
PGSC0003DMG401015541 Solanum tuberosum HOM05D005425 ORTHO05D006686 1.3e-34 150.6 107 73.8
PGSC0003DMG402015541 Solanum tuberosum HOM05D005425 ORTHO05D006686 1.3e-34 150.6 107 73.8
TAR383G0806 Trochodendron aralioides HOM05D005425 ORTHO05D006686 1.7e-34 150.2 130 62.3
CAN.G764.11 Capsicum annuum HOM05D005425 ORTHO05D006686 3.8e-34 149.1 107 73.8
MBI13_g09074_MAGBIO Magnolia biondii HOM05D005425 ORTHO05D006686 3.8e-34 149.1 110 68.2
Peaxi162Scf00406g00239 Petunia axillaris HOM05D005425 ORTHO05D006686 3.8e-34 149.1 107 72.9
Sopen11g030870 Solanum pennellii HOM05D005425 ORTHO05D006686 4.9e-34 148.7 107 72.9
Pp3c23_11420 Physcomitrium patens HOM05D005425 ORTHO05D006686 6.5e-34 148.3 108 71.3
QL11p003539 Quercus lobata HOM05D005425 ORTHO05D006686 6.5e-34 148.3 158 55.7
THA.LOC104810974 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 2.5e-33 146.4 108 67.6
unitig_578.g16119 Utricularia gibba HOM05D005425 ORTHO05D006686 2.5e-33 146.4 109 68.8
CDE11G0474 Ceratophyllum demersum HOM05D005425 ORTHO05D006686 3.2e-33 146.0 110 68.2
PGSC0003DMG400015542 Solanum tuberosum HOM05D005425 ORTHO05D006686 3.2e-33 146.0 104 75.0
SMO347G0418 Selaginella moellendorffii HOM05D005425 ORTHO05D006686 5.5e-33 145.2 107 70.1
Pp3c23_5560 Physcomitrium patens HOM05D005425 ORTHO05D006686 9.3e-33 144.4 105 71.4
THA.LOC104799598 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 4.6e-32 142.1 107 68.2
Carub.0005s0927 Capsella rubella HOM05D005425 ORTHO05D006686 7.9e-32 141.4 107 66.4
AT3G43520 Arabidopsis thaliana HOM05D005425 ORTHO05D006686 1.0e-31 141.0 107 65.4
FAN28G1834 Fragaria x ananassa HOM05D005425 ORTHO05D006686 2.3e-31 139.8 164 51.2
AL5G21490 Arabidopsis lyrata HOM05D005425 ORTHO05D006686 3.9e-31 139.0 110 64.5
AUR62026084 Chenopodium quinoa HOM05D005425 ORTHO05D006686 3.9e-31 139.0 107 67.3
Aa31LG4G13370 Aethionema arabicum HOM05D005425 ORTHO05D006686 5.1e-31 138.7 107 66.4
FAN23G2130 Fragaria x ananassa HOM05D005425 ORTHO05D006686 5.1e-31 138.7 109 66.1
SEGI_36327 Sequoiadendron giganteum HOM05D005425 ORTHO05D006686 5.1e-31 138.7 92 76.1
Ah.04g151490 Amaranthus hybridus HOM05D005425 ORTHO05D006686 6.7e-31 138.3 107 65.4
BcaB02g10778 Brassica carinata HOM05D005425 ORTHO05D006686 8.7e-31 137.9 107 67.3
AagrBONN_evm.TU.Sc2ySwM_344.3815 Anthoceros agrestis HOM05D005425 ORTHO05D006686 3.3e-30 136.0 103 67.0
BcaC01g02214 Brassica carinata HOM05D005425 ORTHO05D006686 4.3e-30 135.6 107 65.4
A06p26640 Brassica napus HOM05D005425 ORTHO05D006686 4.3e-30 135.6 107 65.4
C03p67740 Brassica napus HOM05D005425 ORTHO05D006686 4.3e-30 135.6 107 65.4
BolSC21t60236H Brassica oleracea HOM05D005425 ORTHO05D006686 4.3e-30 135.6 107 65.4
BraA06t25598Z Brassica rapa HOM05D005425 ORTHO05D006686 4.3e-30 135.6 107 65.4
AUR62024499 Chenopodium quinoa HOM05D005425 ORTHO05D006686 4.3e-30 135.6 107 66.4
Sc13g0001610 Simmondsia chinensis HOM05D005425 ORTHO05D006686 5.7e-30 135.2 104 67.3
CARHR098710 Cardamine hirsuta HOM05D005425 ORTHO05D006686 7.4e-30 134.8 107 65.4
EL10Ac3g07129 Beta vulgaris HOM05D005425 ORTHO05D006686 1.6e-29 133.7 107 63.6
Sp5g17760 Schrenkiella parvula HOM05D005425 ORTHO05D006686 2.1e-29 133.3 107 64.5
SGA_v2.0_scaffold118G32605 Striga asiatica HOM05D005425 ORTHO05D006686 2.8e-29 132.9 108 67.6
SMO351G0348 Selaginella moellendorffii HOM05D005425 ORTHO05D006686 4.8e-29 132.1 107 60.7
THA.LOC104804448 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 8.2e-29 131.3 105 65.7
CARHR115050 Cardamine hirsuta HOM05D005425 ORTHO05D006686 4.1e-28 129.0 105 64.8
CDE05G1879 Ceratophyllum demersum HOM05D005425 ORTHO05D006686 9.0e-28 127.9 99 65.7
AT2G26240 Arabidopsis thaliana HOM05D005425 ORTHO05D006686 3.4e-27 125.9 105 62.9
Sp4g06390 Schrenkiella parvula HOM05D005425 ORTHO05D006686 3.4e-27 125.9 105 63.8
Carub.0004s0606 Capsella rubella HOM05D005425 ORTHO05D006686 4.5e-27 125.6 105 63.8
AL4G18820 Arabidopsis lyrata HOM05D005425 ORTHO05D006686 5.9e-27 125.2 105 62.9
BcaC07g40833 Brassica carinata HOM05D005425 ORTHO05D006686 1.3e-26 124.0 105 61.9
Mapoly0059s0086 Marchantia polymorpha HOM05D005425 ORTHO05D006686 1.3e-26 124.0 95 66.3
vmacro13523 Vaccinium macrocarpon HOM05D005425 ORTHO05D006686 1.3e-26 124.0 100 69.0
BcaB08g35283 Brassica carinata HOM05D005425 ORTHO05D006686 1.7e-26 123.6 105 61.9
A09p55370 Brassica napus HOM05D000181 ORTHO05D004115 2.9e-26 122.9 105 61.0
C08p38290 Brassica napus HOM05D000181 ORTHO05D004115 2.9e-26 122.9 105 61.0
BolC8t51404H Brassica oleracea HOM05D005425 ORTHO05D006686 2.9e-26 122.9 105 61.0
BraA09t40938Z Brassica rapa HOM05D005425 ORTHO05D006686 5.0e-26 122.1 104 61.5
Aa31LG5G9560 Aethionema arabicum HOM05D005425 ORTHO05D006686 6.5e-26 121.7 108 61.1
PGR142G0340 Punica granatum HOM05D005425 ORTHO05D006686 8.4e-26 121.3 109 63.3
Thhalv10002166m.g Eutrema salsugineum HOM05D005425 ORTHO05D006686 5.9e-19 98.6 86 61.6
Zm00001eb432380 Zea mays HOM05D005425 ORTHO05D006686 7.7e-19 98.2 67 83.6
CBR_g16036 Chara braunii HOM05D005425 ORTHO05D006686 4.2e-17 92.4 105 46.7
Thhalv10002673m.g Eutrema salsugineum HOM05D005425 ORTHO05D006686 9.7e-14 81.3 62 69.4
FvH4_1g06370 Fragaria vesca HOM05D005425 ORTHO05D046282 1.9e-09 67.0 63 61.9
FAN19G2796 Fragaria x ananassa HOM05D005425 ORTHO05D046282 5.5e-09 65.5 63 60.3
Zm00001eb041420 Zea mays HOM05D001962 ORTHO05D002236 1.6e-08 63.9 35 97.1
Oeu020536.1 Olea europaea HOM05D005425 ORTHO05D006686 3.0e-07 59.7 57 57.9
SGA_v2.0_scaffold8G04307 Striga asiatica HOM05D004888 ORTHO05D005792 6.7e-07 58.5 101 37.6
MBI18_g42744_MAGBIO Magnolia biondii HOM05D004888 ORTHO05D005792 2.0e-06 57.0 96 39.6
Migut.M01776 Erythranthe guttata HOM05D004888 ORTHO05D005792 4.4e-06 55.8 101 35.6
C06p06010 Brassica napus HOM05D004888 ORTHO05D005792 5.7e-06 55.5 103 41.7
BolC6t35714H Brassica oleracea HOM05D004888 ORTHO05D005792 5.7e-06 55.5 103 41.7
BraA06t23494Z Brassica rapa HOM05D004888 ORTHO05D005792 7.4e-06 55.1 103 41.7
unitig_62.g23280 Utricularia gibba HOM05D004888 ORTHO05D005792 7.4e-06 55.1 97 38.1
QL08p010712 Quercus lobata HOM05D004888 ORTHO05D005792 9.7e-06 54.7 101 36.6
QL08p011155 Quercus lobata HOM05D004888 ORTHO05D005792 9.7e-06 54.7 101 36.6


User provided reference genes

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