Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb067810 Zea mays HOM05D005642 ORTHO05D006672 1.2e-300 1035.8 547 100.0
Zm00001eb432470 Zea mays HOM05D005642 ORTHO05D006672 5.5e-213 744.6 585 72.3
Os04g0655600 Oryza sativa ssp. japonica HOM05D005642 ORTHO05D006672 4.3e-133 479.2 600 53.2
MBI14_g08146_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 1.0e-25 122.5 230 35.7
MBI16_g31790_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 5.1e-25 120.2 233 38.6
CDE07G1180 Ceratophyllum demersum HOM05D005642 ORTHO05D006672 2.5e-24 117.9 248 36.7
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 4.3e-24 117.1 238 35.7
HPP92_015370 Vanilla planifolia HOM05D005642 ORTHO05D006672 2.1e-23 114.8 307 31.6
Lalb_Chr23g0269061 Lupinus albus HOM05D005642 ORTHO05D006672 4.4e-21 107.1 262 34.4
Cfa013263 Carpinus fangiana HOM05D005642 ORTHO05D006672 3.8e-20 104.0 167 37.1
Dinv03494 Davidia involucrata HOM05D005642 ORTHO05D006672 6.4e-20 103.2 223 33.6
MELO3C003630.2 Cucumis melo HOM05D005642 ORTHO05D006672 1.4e-19 102.1 179 36.9
CsaV3_3G047060 Cucumis sativus L. HOM05D005642 ORTHO05D006672 1.4e-19 102.1 532 27.6
Manes.03G003300 Manihot esculenta HOM05D005642 ORTHO05D006672 2.4e-19 101.3 224 36.2
ClCG05G017540 Citrullus lanatus HOM05D005642 ORTHO05D006672 4.2e-19 100.5 335 29.9
TAR383G0661 Trochodendron aralioides HOM05D005642 ORTHO05D006672 4.2e-19 100.5 467 26.8
Thecc.09G006400 Theobroma cacao HOM05D005642 ORTHO05D006672 9.3e-19 99.4 300 31.0
Potri.006G275200 Populus trichocarpa HOM05D005642 ORTHO05D006672 1.2e-18 99.0 173 34.7
Hma1.2p1_0379F.1_g139820 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 1.6e-18 98.6 216 33.8
Hma1.2p1_0379F.1_g139825 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 1.6e-18 98.6 216 33.8
Prupe.1G460900 Prunus persica HOM05D005642 ORTHO05D006672 2.7e-18 97.8 320 33.1
Glyma.06G075900 Glycine max HOM05D005642 ORTHO05D006672 3.5e-18 97.4 257 34.2
Nn8g40457 Nelumbo nucifera HOM05D005642 ORTHO05D006672 4.6e-18 97.1 260 34.6
arahy.Tifrunner.gnm1.ann1.4FD105 Arachis hypogaea HOM05D005642 ORTHO05D006672 6.0e-18 96.7 279 31.9
arahy.Tifrunner.gnm1.ann1.KDL0BF Arachis hypogaea HOM05D005642 ORTHO05D006672 1.0e-17 95.9 279 35.5
Lalb_Chr11g0064111 Lupinus albus HOM05D005642 ORTHO05D006672 1.0e-17 95.9 326 31.6
Sabra18G0014300 Salix brachista HOM05D005642 ORTHO05D006672 1.0e-17 95.9 173 35.8
Sabra06G0213000 Salix brachista HOM05D005642 ORTHO05D006672 1.7e-17 95.1 200 34.0
CSS0029793 Camellia sinensis var. sinensis HOM05D005642 ORTHO05D006672 3.9e-17 94.0 406 28.6
Duzib168G1720 Durio zibethinus HOM05D005642 ORTHO05D006672 5.1e-17 93.6 177 34.5
HPP92_018374 Vanilla planifolia HOM05D005642 ORTHO05D006672 8.7e-17 92.8 293 31.1
Phvul.009G100600 Phaseolus vulgaris HOM05D005642 ORTHO05D006672 1.1e-16 92.4 179 35.8
FAN27G2209 Fragaria x ananassa HOM05D005642 ORTHO05D006672 2.5e-16 91.3 329 31.0
Medtr3g108780 Medicago truncatula HOM05D005642 ORTHO05D006672 2.5e-16 91.3 183 36.1
Psat5g024120 Pisum sativum HOM05D005642 ORTHO05D006672 2.5e-16 91.3 177 36.7
GSVIVG01035528001 Vitis vinifera HOM05D005642 ORTHO05D006672 3.3e-16 90.9 222 32.0
Ca_15671_v3 Cicer arietinum L. HOM05D005642 ORTHO05D006672 7.3e-16 89.7 181 36.5
Gohir.A07G001500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 7.3e-16 89.7 309 30.1
Haze_21725 Corylus avellana HOM05D005642 ORTHO05D006672 1.6e-15 88.6 167 34.1
Sed0007069 Sechium edule HOM05D005642 ORTHO05D006672 1.6e-15 88.6 335 29.9
Gorai.001G001600 Gossypium raimondii HOM05D005642 ORTHO05D006672 2.8e-15 87.8 313 30.0
Atru.chr7.2633 Acer truncatum HOM05D005642 ORTHO05D006672 3.6e-15 87.4 126 42.1
Gohir.D07G001900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 3.6e-15 87.4 313 30.0
FAN15G2732 Fragaria x ananassa HOM05D005642 ORTHO05D006672 8.1e-15 86.3 341 31.4
VMungo1309G0073 Vigna mungo HOM05D005642 ORTHO05D006672 8.1e-15 86.3 296 34.1
Ciclev10007752m.g Citrus clementina HOM05D005642 ORTHO05D006672 1.1e-14 85.9 407 27.8
COL.COLO4_19042 Corchorus olitorius HOM05D005642 ORTHO05D006672 3.1e-14 84.3 169 32.0
FAN20G1085 Fragaria x ananassa HOM05D005642 ORTHO05D006672 5.3e-14 83.6 455 29.2
QL12p025051 Quercus lobata HOM05D005642 ORTHO05D006672 1.2e-13 82.4 225 30.2
Glyma.04G074900 Glycine max HOM05D005642 ORTHO05D006672 1.5e-13 82.0 171 35.1
THA.LOC104803598 Tarenaya hassleriana HOM05D005642 ORTHO05D006672 3.4e-13 80.9 177 32.2
Lj1g0005947 Lotus japonicus HOM05D005642 ORTHO05D006672 4.5e-13 80.5 313 31.3
RcHm_v2.0_Chr6g0304881 Rosa chinensis HOM05D005642 ORTHO05D006672 4.5e-13 80.5 296 33.1
Gorai.009G068300 Gossypium raimondii HOM05D005642 ORTHO05D006672 7.6e-13 79.7 277 27.1
Gohir.A05G064900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 9.9e-13 79.3 270 28.5
Gohir.D05G067500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 9.9e-13 79.3 276 26.8
PGR044G2675 Punica granatum HOM05D005642 ORTHO05D006672 1.3e-12 79.0 194 31.4
TWI63G0215 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 2.2e-12 78.2 246 29.3
ECA246G0678 Erigeron canadensis HOM05D005642 ORTHO05D006672 2.9e-12 77.8 223 30.5
FvH4_2g36900 Fragaria vesca HOM05D005642 ORTHO05D006672 2.9e-12 77.8 341 30.8
Potri.018G006200 Populus trichocarpa HOM05D005642 ORTHO05D006672 4.9e-12 77.0 414 25.6
Hund19402 Selenicereus undatus HOM05D005642 ORTHO05D006672 6.4e-12 76.6 356 28.1
CAN.G673.14 Capsicum annuum HOM05D005642 ORTHO05D006672 1.1e-11 75.9 320 29.1
MD15G1108600 Malus domestica HOM05D005642 ORTHO05D006672 2.4e-11 74.7 180 31.7
Actinidia06420 Actinidia chinensis HOM05D005642 ORTHO05D006672 3.2e-11 74.3 327 26.0
TWI32G0776 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 3.2e-11 74.3 243 29.6
Aqoxy7G02962 Aquilegia oxysepala HOM05D005642 ORTHO05D006672 5.4e-11 73.6 511 29.5
HanXRQChr17g0538601 Helianthus annuus HOM05D005642 ORTHO05D006672 7.1e-11 73.2 218 29.8
PSO063G4833 Papaver somniferum HOM05D005642 ORTHO05D006672 7.1e-11 73.2 552 25.2
Carub.0007s0913 Capsella rubella HOM05D005642 ORTHO05D006672 9.3e-11 72.8 312 29.8
PSO170G3270 Papaver somniferum HOM05D005642 ORTHO05D006672 9.3e-11 72.8 589 26.1
Solyc08g006480.3 Solanum lycopersicum HOM05D005642 ORTHO05D006672 9.3e-11 72.8 222 32.0
Sopen08g002430 Solanum pennellii HOM05D005642 ORTHO05D006672 9.3e-11 72.8 222 32.0
Migut.A00441 Erythranthe guttata HOM05D005642 ORTHO05D006672 1.2e-10 72.4 181 34.3
Nitab4.5_0004131g0010 Nicotiana tabacum HOM05D005642 ORTHO05D006672 2.7e-10 71.2 179 34.6
SHI21128 Sapria himalayana HOM05D005642 ORTHO05D006672 2.7e-10 71.2 72 50.0
CARHR239310 Cardamine hirsuta HOM05D005642 ORTHO05D006672 6.0e-10 70.1 312 29.8
DCAR_004570 Daucus carota HOM05D005642 ORTHO05D006672 6.0e-10 70.1 420 28.1
Thhalv10024763m.g Eutrema salsugineum HOM05D005642 ORTHO05D006672 7.9e-10 69.7 275 30.2
MSTRG.25774 Avicennia marina HOM05D005642 ORTHO05D006672 1.0e-09 69.3 290 26.6
CiPaw.07G213400 Carya illinoinensis HOM05D005642 ORTHO05D006672 1.0e-09 69.3 581 27.0
Cc11_g04340 Coffea canephora HOM05D005642 ORTHO05D006672 1.3e-09 68.9 237 27.8
AT4G31430 Arabidopsis thaliana HOM05D005642 ORTHO05D006672 1.8e-09 68.6 274 30.3
SGA_v2.0_scaffold27G11668 Striga asiatica HOM05D005642 ORTHO05D006672 1.8e-09 68.6 332 27.4
vmacro00200 Vaccinium macrocarpon HOM05D005642 ORTHO05D006672 3.0e-09 67.8 139 34.5
Migut.E01422 Erythranthe guttata HOM05D005642 ORTHO05D006672 3.9e-09 67.4 204 28.9
AL7G20630 Arabidopsis lyrata HOM05D005642 ORTHO05D006672 1.1e-08 65.9 176 30.7
AUR62020612 Chenopodium quinoa HOM05D005642 ORTHO05D006672 1.1e-08 65.9 492 26.2
Eucgr.C04006 Eucalyptus grandis HOM05D005642 ORTHO05D006672 1.1e-08 65.9 195 30.8
Sp7g29290 Schrenkiella parvula HOM05D005642 ORTHO05D006672 1.1e-08 65.9 310 26.5
AUR62009051 Chenopodium quinoa HOM05D005642 ORTHO05D006672 1.5e-08 65.5 239 26.4
A08p18620 Brassica napus HOM05D005642 ORTHO05D006672 3.3e-08 64.3 310 26.5
Peaxi162Scf00045g01740 Petunia axillaris HOM05D005642 ORTHO05D006672 3.3e-08 64.3 311 26.7
BraA08t33825Z Brassica rapa HOM05D005642 ORTHO05D006672 4.3e-08 63.9 308 26.6
Aa31LG2G18900 Aethionema arabicum HOM05D005642 ORTHO05D006672 5.6e-08 63.5 338 29.0
Nitab4.5_0000555g0260 Nicotiana tabacum HOM05D005642 ORTHO05D006672 1.3e-07 62.4 126 35.7
BraA01t00636Z Brassica rapa HOM05D005642 ORTHO05D006672 2.1e-07 61.6 293 26.6
Oeu014127.1 Olea europaea HOM05D005642 ORTHO05D006672 2.1e-07 61.6 170 29.4
BcaC01g01089 Brassica carinata HOM05D005642 ORTHO05D006672 3.7e-07 60.8 305 27.5
C03p87980 Brassica napus HOM05D005642 ORTHO05D006672 3.7e-07 60.8 305 27.5
BolC3t21109H Brassica oleracea HOM05D005642 ORTHO05D006672 3.7e-07 60.8 305 27.9
BcaNung04578 Brassica carinata HOM05D005642 ORTHO05D006672 6.2e-07 60.1 273 28.9
Sc23g0006020 Simmondsia chinensis HOM05D005642 ORTHO05D006672 6.2e-07 60.1 481 25.6
EL10Ac2g03740 Beta vulgaris HOM05D005642 ORTHO05D006672 8.1e-07 59.7 343 26.5
BcaB03g12695 Brassica carinata HOM05D005642 ORTHO05D006672 8.1e-07 59.7 304 26.0
Lsat_1_v5_gn_3_25461 Lactuca sativa HOM05D005642 ORTHO05D006672 8.1e-07 59.7 219 27.4
Ah.11g043760 Amaranthus hybridus HOM05D005642 ORTHO05D006672 3.1e-06 57.8 531 23.4
arahy.Tifrunner.gnm1.ann1.GW4HJP Arachis hypogaea HOM05D000013 ORTHO05D021469 3.1e-06 57.8 75 44.0
SalBow8G4661 Salvia bowleyana HOM05D005642 ORTHO05D006672 3.1e-06 57.8 493 26.4
Cpa.g.sc23.5 Carica papaya HOM05D005642 ORTHO05D006672 5.3e-06 57.0 177 26.6


User provided reference genes

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