Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb067460 Zea mays HOM05D002002 ORTHO05D008797 3.2e-285 984.6 553 100.0
Os04g0661700 Oryza sativa ssp. japonica HOM05D002002 ORTHO05D008797 1.3e-132 477.6 543 60.8
HPP92_005414 Vanilla planifolia HOM05D002002 ORTHO05D008797 1.8e-38 164.9 569 34.1
Aqoxy3G01206 Aquilegia oxysepala HOM05D002002 ORTHO05D008797 1.3e-31 142.1 539 34.0
Duzib248G0209 Durio zibethinus HOM05D002002 ORTHO05D008797 3.7e-31 140.6 576 33.2
Nitab4.5_0000007g0090 Nicotiana tabacum HOM05D002002 ORTHO05D008797 8.2e-31 139.4 548 32.7
MD16G1102300 Malus domestica HOM05D002002 ORTHO05D008797 1.1e-30 139.0 542 32.7
Manes.13G024600 Manihot esculenta HOM05D002002 ORTHO05D008797 1.1e-30 139.0 548 34.9
CsaV3_5G031140 Cucumis sativus L. HOM05D002002 ORTHO05D008797 3.1e-30 137.5 577 33.1
Phvul.003G065200 Phaseolus vulgaris HOM05D002002 ORTHO05D008797 1.5e-29 135.2 567 33.2
Atru.chr11.2102 Acer truncatum HOM05D002002 ORTHO05D008797 1.7e-28 131.7 556 32.2
Migut.K00597 Erythranthe guttata HOM05D002002 ORTHO05D008797 2.9e-28 131.0 590 32.4
Sabra08G0141500 Salix brachista HOM05D002002 ORTHO05D008797 1.1e-27 129.0 545 32.5
MELO3C011952.2 Cucumis melo HOM05D002002 ORTHO05D008711 1.4e-27 128.6 553 33.3
PSO017G3282 Papaver somniferum HOM05D002002 ORTHO05D008797 1.9e-27 128.3 586 32.8
ATR0824G114 Amborella trichopoda HOM05D002002 ORTHO05D008797 4.2e-27 127.1 189 48.7
Nitab4.5_0009240g0010 Nicotiana tabacum HOM05D002002 ORTHO05D008797 5.5e-27 126.7 202 46.0
Rhsim12G0110400 Rhododendron simsii HOM05D002002 ORTHO05D008797 9.3e-27 125.9 184 51.6
unitig_26.g10348 Utricularia gibba HOM05D002002 ORTHO05D008797 9.3e-27 125.9 557 32.7
Potri.010G046000 Populus trichocarpa HOM05D002002 ORTHO05D008797 1.2e-26 125.6 556 31.5
ECA233G4520 Erigeron canadensis HOM05D002002 ORTHO05D008797 1.6e-26 125.2 560 31.4
MD13G1101700 Malus domestica HOM05D002002 ORTHO05D008797 1.0e-25 122.5 582 32.3
Gohir.D04G179800 Gossypium hirsutum HOM05D002002 ORTHO05D008797 1.5e-24 118.6 567 30.5
Actinidia15094 Actinidia chinensis HOM05D002002 ORTHO05D008797 3.3e-24 117.5 542 31.7
Gorai.012G173000 Gossypium raimondii HOM05D002002 ORTHO05D008797 4.3e-24 117.1 567 30.3
Lalb_Chr16g0392181 Lupinus albus HOM05D002002 ORTHO05D008797 1.3e-23 115.5 581 30.5
vmacro16196 Vaccinium macrocarpon HOM05D002002 ORTHO05D008797 1.3e-23 115.5 256 41.0
GSVIVG01005756001 Vitis vinifera HOM05D002002 ORTHO05D008797 1.6e-23 115.2 181 45.9
Eucgr.H02500 Eucalyptus grandis HOM05D002002 ORTHO05D008797 4.8e-23 113.6 585 30.1
Dinv15235 Davidia involucrata HOM05D002002 ORTHO05D008797 3.1e-22 110.9 588 29.4
Duzib251G0042 Durio zibethinus HOM05D002002 ORTHO05D008797 5.3e-22 110.2 555 29.0
QL03p058108 Quercus lobata HOM05D002002 ORTHO05D008797 9.0e-22 109.4 357 33.1
Oeu059906.4 Olea europaea HOM05D002002 ORTHO05D008797 2.0e-21 108.2 273 37.7
PGR119G0425 Punica granatum HOM05D002002 ORTHO05D008797 3.4e-21 107.5 559 31.8
Cfa009210 Carpinus fangiana HOM05D002002 ORTHO05D008797 7.7e-21 106.3 573 31.2
Cpa.g.sc33.18 Carica papaya HOM05D002002 ORTHO05D008797 3.8e-20 104.0 511 30.7
Prupe.1G244100 Prunus persica HOM05D002002 ORTHO05D008797 8.5e-20 102.8 524 30.5
Gohir.A04G136700 Gossypium hirsutum HOM05D002002 ORTHO05D008797 1.4e-19 102.1 419 31.3
EL10Ac6g13807 Beta vulgaris HOM05D002002 ORTHO05D008797 1.9e-19 101.7 546 30.4
CAN.G832.3 Capsicum annuum HOM05D002002 ORTHO05D008797 2.5e-19 101.3 523 32.9
Lsat_1_v5_gn_8_152141 Lactuca sativa HOM05D002002 ORTHO05D008711 2.5e-19 101.3 236 41.5
Sc11g0000970 Simmondsia chinensis HOM05D002002 ORTHO05D008797 3.2e-19 100.9 532 28.9
Haze_12247 Corylus avellana HOM05D002002 ORTHO05D008711 7.2e-19 99.8 542 30.3
Glyma.18G143900 Glycine max HOM05D002002 ORTHO05D008797 1.6e-18 98.6 529 29.1
HanXRQChr08g0208141 Helianthus annuus HOM05D002002 ORTHO05D008797 1.6e-18 98.6 312 33.0
Ciclev10030634m.g Citrus clementina HOM05D002002 ORTHO05D008797 2.1e-18 98.2 552 30.1
Oeu029877.3 Olea europaea HOM05D002002 ORTHO05D008797 2.7e-18 97.8 549 30.8
CSS0037172 Camellia sinensis var. sinensis HOM05D002002 ORTHO05D008797 6.1e-18 96.7 572 29.9
AUR62005461 Chenopodium quinoa HOM05D002002 ORTHO05D008797 7.9e-18 96.3 429 30.3
FAN22G2309 Fragaria x ananassa HOM05D002002 ORTHO05D008797 1.0e-17 95.9 342 38.0
Potri.008G186900 Populus trichocarpa HOM05D002002 ORTHO05D008797 1.8e-17 95.1 517 30.4
SalBow2G1965 Salvia bowleyana HOM05D002002 ORTHO05D008797 1.5e-16 92.0 518 30.3
Sopen05g008360 Solanum pennellii HOM05D002002 ORTHO05D008797 1.5e-16 92.0 520 30.4
TAR374G0715 Trochodendron aralioides HOM05D002002 ORTHO05D008797 1.3e-15 89.0 548 30.3
Sed0005394 Sechium edule HOM05D002002 ORTHO05D008797 2.8e-15 87.8 552 31.0
AUR62024280 Chenopodium quinoa HOM05D002002 ORTHO05D008797 3.7e-15 87.4 463 29.8
Mapoly0026s0020 Marchantia polymorpha HOM05D002002 ORTHO05D008797 3.7e-15 87.4 204 40.7
ClCG05G025730 Citrullus lanatus HOM05D002002 ORTHO05D008797 4.8e-15 87.0 542 29.0
arahy.Tifrunner.gnm1.ann1.PHTA8N Arachis hypogaea HOM05D002002 ORTHO05D008711 1.4e-14 85.5 506 29.6
SGA_v2.0_scaffold476G52131 Striga asiatica HOM05D002002 ORTHO05D008797 1.4e-14 85.5 507 30.2
C02p28000 Brassica napus HOM05D002002 ORTHO05D008797 4.1e-14 84.0 177 43.5
Cc11_g15720 Coffea canephora HOM05D002002 ORTHO05D008797 4.1e-14 84.0 561 30.5
TPR.G17755 Trifolium pratense HOM05D002002 ORTHO05D008711 1.5e-13 82.0 141 43.3
COL.COLO4_24277 Corchorus olitorius HOM05D002002 ORTHO05D008797 2.0e-13 81.6 534 29.4
DCAR_031153 Daucus carota HOM05D002002 ORTHO05D008797 2.0e-13 81.6 496 29.8
Peaxi162Scf00128g00134 Petunia axillaris HOM05D002002 ORTHO05D008797 2.6e-13 81.3 594 26.6
FAN17G1038 Fragaria x ananassa HOM05D002002 ORTHO05D008711 3.4e-13 80.9 503 31.6
CDE07G1782 Ceratophyllum demersum HOM05D002002 ORTHO05D008797 7.7e-13 79.7 486 29.2
Lj4g0017193 Lotus japonicus HOM05D002002 ORTHO05D008797 1.0e-12 79.3 538 28.6
Glyma.08G282400 Glycine max HOM05D002002 ORTHO05D008797 1.7e-12 78.6 554 30.0
Lalb_Chr05g0228431 Lupinus albus HOM05D002002 ORTHO05D008797 1.7e-12 78.6 523 29.3
CiPaw.05G182600 Carya illinoinensis HOM05D002002 ORTHO05D008797 8.5e-12 76.3 588 29.1
DCAR_007056 Daucus carota HOM05D002002 ORTHO05D008797 1.1e-11 75.9 444 29.7
Psat4g115320 Pisum sativum HOM05D002002 ORTHO05D008797 1.9e-11 75.1 532 28.4
Ca_22584_v3 Cicer arietinum L. HOM05D002002 ORTHO05D008711 5.5e-11 73.6 547 28.3
PSO478G2109 Papaver somniferum HOM05D002002 ORTHO05D008797 3.6e-10 70.9 593 28.3
arahy.Tifrunner.gnm1.ann1.YSSX7I Arachis hypogaea HOM05D002002 ORTHO05D008797 4.7e-10 70.5 518 28.4
Dinv24786 Davidia involucrata HOM05D002002 ORTHO05D008797 6.1e-10 70.1 578 27.0
FvH4_4g25541 Fragaria vesca HOM05D002002 ORTHO05D008797 1.0e-09 69.3 507 30.6
GSVIVG01005755001 Vitis vinifera HOM05D002002 ORTHO05D008797 1.4e-09 68.9 97 53.6
Thecc.02G259600 Theobroma cacao HOM05D002002 ORTHO05D008797 2.3e-09 68.2 482 27.0
RcHm_v2.0_Chr4g0432951 Rosa chinensis HOM05D002002 ORTHO05D008797 3.0e-09 67.8 517 30.2
unitig_26.g10410 Utricularia gibba HOM05D002002 ORTHO05D008797 3.0e-09 67.8 139 39.6
Aa31LG4G10340 Aethionema arabicum HOM05D002002 ORTHO05D008711 8.8e-09 66.2 588 29.6
AT1G70620 Arabidopsis thaliana HOM05D002002 ORTHO05D008797 4.4e-08 63.9 422 27.0
Sp5g25780 Schrenkiella parvula HOM05D002002 ORTHO05D008797 5.7e-08 63.5 546 29.5
Carub.0002s1735 Capsella rubella HOM05D002002 ORTHO05D008797 1.3e-07 62.4 541 27.9
Hund25388 Selenicereus undatus HOM05D002002 ORTHO05D008797 3.7e-07 60.8 553 27.5
Pp3c22_14720 Physcomitrium patens HOM05D002002 ORTHO05D008797 7.0e-06 56.6 481 29.5
SEGI_21221 Sequoiadendron giganteum HOM05D002002 ORTHO05D008797 7.0e-06 56.6 569 26.5
A02p16740 Brassica napus HOM05D002002 ORTHO05D008797 9.1e-06 56.2 553 29.5


User provided reference genes

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